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The role and regulation of cell death in cancer. 细胞死亡在癌症中的作用和调控。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-06-25 DOI: 10.1016/bs.pmbts.2025.06.014
Minh Trong Quang, Minh Nam Nguyen, Van Thai Than

Regulated cell death (RCD) is an essential aspect of cellular homeostasis and coordinates important physiological processes, such as immune regulation, embryogenesis, and tissue remodeling. In cancer, the regulation of RCD is disrupted to allow tumor cells to resist apoptosis, modify their function to survive microenvironmental stresses, and become resistant to standard therapies. Beyond apoptosis, new modalities of RCD including necroptosis, pyroptosis, ferroptosis, and parthanatos, play multifaceted roles in tumor suppression and progression, determined by interactions with the tumor microenvironment (TME). These RCD pathways possess unique molecular regulators and exhibit distinctive immunological and pathological connotations with novel therapeutic potential. Here, in the current study, the mechanistic complexity of RCD pathways and their interactions with the TME, particularly in their immune evasion, tumor progression and therapy resistance roles, are reviewed. Furthermore, the therapeutic potential of the modulation of RCD pathways by using small-molecule inhibitors, immune checkpoint inhibitors, and combination therapies that repurpose the TME, were tested. The newly emerging technologies, such as nanotechnology and biomimetic delivery systems, are proposed to deliver novel solutions to escalating the specificity and potency of RCD-targeted therapy and confronting systemic toxicity as well as adaptive resistance. By combining mechanistic knowledge with innovative therapy, the transformative potential of RCD modulation in treating cancers is highlighted in the current review to improve precision oncology strategies that augment the efficacy of therapies and increase patient benefit.

调节细胞死亡(RCD)是细胞内稳态的一个重要方面,并协调重要的生理过程,如免疫调节、胚胎发生和组织重塑。在癌症中,RCD的调控被破坏,允许肿瘤细胞抵抗凋亡,改变其功能以生存微环境应激,并对标准治疗产生耐药性。除了细胞凋亡,RCD的新形式包括坏死性坏死、焦性坏死、铁性下垂和旁咽下,在肿瘤抑制和进展中发挥多方面的作用,这是由与肿瘤微环境(TME)的相互作用决定的。这些RCD通路具有独特的分子调控因子,具有独特的免疫学和病理学内涵,具有新的治疗潜力。本文综述了RCD通路的机制复杂性及其与TME的相互作用,特别是它们的免疫逃避、肿瘤进展和治疗抵抗作用。此外,通过使用小分子抑制剂、免疫检查点抑制剂和重新利用TME的联合疗法来调节RCD途径的治疗潜力进行了测试。新兴技术,如纳米技术和仿生给药系统,被提出提供新的解决方案,以提高rcd靶向治疗的特异性和效力,并应对全身毒性和适应性耐药。通过将机制知识与创新疗法相结合,当前的综述强调了RCD调节在治疗癌症方面的变革潜力,以提高精确的肿瘤学策略,增强治疗效果并增加患者获益。
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引用次数: 0
Preface. 前言。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1016/S1877-1173(25)00027-4
Tanveer A Dar, Laishram R Singh, Vladimir N Uversky
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引用次数: 0
COVID-19 related complications. COVID-19相关并发症。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-03-06 DOI: 10.1016/bs.pmbts.2025.02.002
Muhamed Adilović

The COVID-19 pandemic has significantly impacted global healthcare systems, revealed vulnerabilities and prompted a re-evaluation of medical practices. Acute complications from the virus, including cardiovascular and neurological issues, have underscored the necessity for timely medical interventions. Advances in diagnostic methods and personalized therapies have been pivotal in mitigating severe outcomes. Additionally, Long COVID has emerged as a complex challenge, affecting various body systems and leading to respiratory, cardiovascular, neurological, psychological, and musculoskeletal problems. This broad spectrum of complications highlights the importance of multidisciplinary management approaches that prioritize therapy, rehabilitation, and patient-centered care. Vulnerable populations such as paediatric patients, pregnant women, and immunocompromised individuals face unique risks and complications, necessitating continuous monitoring and tailored management strategies to reduce morbidity and mortality associated with COVID-19.

2019冠状病毒病大流行严重影响了全球卫生保健系统,暴露了脆弱性,并促使人们对医疗实践进行重新评估。该病毒引起的急性并发症,包括心血管和神经系统问题,强调了及时采取医疗干预措施的必要性。诊断方法和个性化治疗的进步在减轻严重后果方面发挥了关键作用。此外,新冠肺炎已成为一项复杂的挑战,影响到各种身体系统,并导致呼吸、心血管、神经、心理和肌肉骨骼问题。这种广泛的并发症突出了多学科管理方法的重要性,优先考虑治疗、康复和以患者为中心的护理。儿科患者、孕妇和免疫功能低下个体等弱势群体面临独特的风险和并发症,需要持续监测和量身定制的管理策略,以降低与COVID-19相关的发病率和死亡率。
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引用次数: 0
Neutrophils and COVID-19. 中性粒细胞与COVID-19。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-03-05 DOI: 10.1016/bs.pmbts.2025.02.003
Jasmin Šutković

Neutrophils are the first line of defense against pathogens, most effectively by forming Neutrophil Extracellular Traps (NETs). Neutrophiles are further classified into several subpopulations during their development, eliminating pathogens through various mechanisms. However, due to the chaotic and uncontrolled immune response, NETs are often severely resulting in tissue damage and lung infections. The uncontrolled and poorly acknowledged host response regarding the cytokine storm is one of the major causes of severe COVID-19 conditions. Specifically, the increased formation of low-density neutrophils (LDNs), together with neutrophil extracellular traps (NETs) is closely linked with the severity and poor prognosis in patients with COVID-19. In this review, we discuss in detail the ontogeny of neutrophils at different stages and their recruitment and activation after infections, focusing on SARS-CoV-2. In addition, this chapter summarized the research progress on potential targeted drugs (NETs and Cytokine inhibitors) for neutrophil medical therapy and hoped to provide reference for the development of related therapeutic drugs for critically ill COVID-19 patients.

中性粒细胞是抵御病原体的第一道防线,最有效的方式是形成中性粒细胞胞外陷阱(NETs)。中性粒细胞在发育过程中进一步分为几个亚群,通过各种机制消除病原体。然而,由于免疫反应混乱和不受控制,NETs往往严重导致组织损伤和肺部感染。对细胞因子风暴的不受控制和不被充分认识的宿主反应是导致COVID-19严重疾病的主要原因之一。具体而言,低密度中性粒细胞(ldn)的增加以及中性粒细胞细胞外陷阱(NETs)的形成与COVID-19患者的严重程度和不良预后密切相关。本文以SARS-CoV-2为重点,详细讨论了不同阶段中性粒细胞的个体发生及其在感染后的募集和激活。此外,本章总结了中性粒细胞药物治疗潜在靶向药物(NETs和细胞因子抑制剂)的研究进展,希望为COVID-19危重症患者相关治疗药物的开发提供参考。
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引用次数: 0
Current approaches in CRISPR-Cas system for metabolic disorder. CRISPR-Cas系统治疗代谢紊乱的最新方法。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-08-16 DOI: 10.1016/bs.pmbts.2024.07.016
Yajushii Arora, Priya, Manishankar Kumar, Dhruv Kumar

A new era in genomic medicine has been brought by the development of CRISPR-Cas technology, which presents hitherto unheard-of possibilities for the treatment of metabolic illnesses. The treatment approaches used in CRISPR/Cas9-mediated gene therapy, emphasize distribution techniques such as viral vectors and their use in preclinical models of metabolic diseases like hypercholesterolemia, glycogen storage diseases, and phenylketonuria. The relevance of high-throughput CRISPR screens for target identification in discovering new genes and pathways associated with metabolic dysfunctions is an important aspect of the discovery of new approaches. With cutting-edge options for genetic correction and cellular regeneration, the combination of CRISPR-Cas technology with stem cell therapy has opened new avenues for the treatment of metabolic illnesses. The integration of stem cell therapy and CRISPR-Cas technology is an important advance in the treatment of metabolic diseases, which are difficult to treat because of their intricate genetic foundations. This chapter addresses the most recent developments in the application of stem cell therapy and CRISPR-Cas systems to treat a variety of metabolic disorders, providing fresh hope for effective and maybe curative therapies. This chapter examines techniques and developments that have been made recently to address a variety of metabolic disorders using CRISPR-Cas systems. Our chapter focuses on the foundational workings of CRISPR-Cas technology and its potential uses in gene editing, gene knockout, and activation/repression-based gene modification.

CRISPR-Cas技术的发展带来了基因组医学的新时代,它为治疗代谢性疾病提供了迄今为止闻所未闻的可能性。CRISPR/ cas9介导的基因治疗中使用的治疗方法强调分布技术,如病毒载体及其在代谢性疾病(如高胆固醇血症、糖原储存病和苯丙酮尿症)的临床前模型中的应用。高通量CRISPR筛选与发现与代谢功能障碍相关的新基因和途径的靶标鉴定的相关性是发现新方法的一个重要方面。CRISPR-Cas技术与干细胞治疗相结合,在基因校正和细胞再生方面具有尖端的选择,为代谢疾病的治疗开辟了新的途径。干细胞治疗与CRISPR-Cas技术的结合是代谢性疾病治疗的重要进展,代谢性疾病由于其复杂的遗传基础而难以治疗。本章介绍了干细胞治疗和CRISPR-Cas系统在治疗多种代谢紊乱方面的最新进展,为有效治疗提供了新的希望。本章研究了最近使用CRISPR-Cas系统解决各种代谢紊乱的技术和发展。本章重点介绍CRISPR-Cas技术的基本工作原理及其在基因编辑、基因敲除和基于激活/抑制的基因修饰方面的潜在用途。
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引用次数: 0
Recent progress in CRISPR/Cas9 system for eye disorders. CRISPR/Cas9系统治疗眼部疾病的最新进展。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-08-17 DOI: 10.1016/bs.pmbts.2024.07.018
D A Ayush Gowda, Girish Birappa, Sripriya Rajkumar, C Bindu Ajaykumar, Bhavana Srikanth, Sammy L Kim, Vijai Singh, Aparna Jayachandran, Junwon Lee, Suresh Ramakrishna

Ocular disorders encompass a broad spectrum of phenotypic and clinical symptoms resulting from several genetic variants and environmental factors. The unique anatomy and physiology of the eye facilitate validation of cutting-edge gene editing treatments. Genome editing developments have allowed researchers to treat a variety of diseases, including ocular disorders. The clustered regularly interspaced short palindromic repeats (CRISPR/Cas9) system holds considerable promise for therapeutic applications in the field of ophthalmology, including repair of aberrant genes and treatment of retinal illnesses related to the genome or epigenome. Application of CRISPR/Cas9 systems to the study of ocular disease and visual sciences have yielded innovations including correction of harmful mutations in patient-derived cells and gene modifications in several mammalian models of eye development and disease. In this study, we discuss the generation of several ocular disease models in mammalian cell lines and in vivo systems using a CRISPR/Cas9 system. We also provide an overview of current uses of CRISPR/Cas9 technologies for the treatment of ocular pathologies, as well as future challenges.

眼部疾病包括多种遗传变异和环境因素引起的广泛的表型和临床症状。眼睛独特的解剖学和生理学有助于验证尖端基因编辑治疗。基因组编辑的发展使研究人员能够治疗包括眼部疾病在内的各种疾病。聚集规律间隔短回文重复序列(CRISPR/Cas9)系统在眼科领域的治疗应用具有相当大的前景,包括修复异常基因和治疗与基因组或表观基因组相关的视网膜疾病。CRISPR/Cas9系统在眼部疾病和视觉科学研究中的应用已经产生了一些创新,包括在患者来源的细胞中纠正有害突变,以及在几种眼睛发育和疾病的哺乳动物模型中进行基因修饰。在这项研究中,我们讨论了使用CRISPR/Cas9系统在哺乳动物细胞系和体内系统中产生几种眼病模型。我们还概述了目前CRISPR/Cas9技术在眼部病变治疗中的应用,以及未来的挑战。
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引用次数: 0
Cell death mechanisms during Mycobacterium tuberculosis infection: A perspective from a host-pathogen interface. 结核分枝杆菌感染期间的细胞死亡机制:从宿主-病原体界面的视角。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-08 DOI: 10.1016/bs.pmbts.2025.06.020
Prachi Nangpal, Nupur Angrish, Garima Khare

Tuberculosis, caused by Mycobacterium tuberculosis (Mtb), is a life threatening disease, which accounts for millions of lives annually. Mtb is an intracellular bacterium, has coevolved with humans to premeditate its machinery to surpass the immunity mounted against it in order to persist for long durations in the system. Cell death is a fundamental process required not only for tissue homeostasis but also for providing protection against intracellular pathogens. Various forms of cell death processes are known including apoptosis, pyroptosis, necroptosis, autophagy etc., that have been shown to play important roles in anti-TB immunity against Mtb. Moreover, inhibition of these pathways by Mtb is considered as one of the virulence mechanisms by which the pathogen is able to survive and replicate inside the host. Apart from identification of newer drug targets and development of anti-TB drugs that solely target the pathogen, recent advancements have been made in developing host-directed therapies against TB, which are aimed at modulating the host responses to reduce excessive inflammation and tissue damage. Thus, understanding the proteins and signaling cascades associated with cell death modalities and their relation with Mtb infection will give us new insights into the area of host-pathogen interactions and help us design better host-directed therapies.

由结核分枝杆菌(Mtb)引起的结核病是一种威胁生命的疾病,每年夺去数百万人的生命。结核分枝杆菌是一种细胞内细菌,与人类共同进化,预先设计了它的机制,以超越对它的免疫,以便在系统中持续很长时间。细胞死亡是一个基本的过程,不仅需要组织稳态,而且提供保护,防止细胞内病原体。已知多种形式的细胞死亡过程,包括细胞凋亡、焦亡、坏死亡、自噬等,已被证明在抗结核免疫中发挥重要作用。此外,Mtb对这些途径的抑制被认为是病原体能够在宿主内存活和复制的毒力机制之一。除了确定新的药物靶点和开发仅针对病原体的抗结核药物外,最近在开发针对结核病的宿主定向疗法方面取得了进展,这些疗法旨在调节宿主反应以减少过度炎症和组织损伤。因此,了解与细胞死亡模式相关的蛋白质和信号级联及其与结核分枝杆菌感染的关系将为我们提供宿主-病原体相互作用领域的新见解,并帮助我们设计更好的宿主定向治疗。
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引用次数: 0
Current findings and potential applications of cell death research in ovarian cancer. 卵巢癌细胞死亡研究的最新发现及潜在应用
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-05 DOI: 10.1016/bs.pmbts.2025.06.019
Anh-Dao Ngo, Tung-Duong Luu, Hai-Quang Pham, Ha-Le Dang, Dinh-Toi Chu

One of the top gynecological health problems for women is ovarian cancer (OC) and it causes a huge disease burden not only for women but for all of humanity. The disease's immense burden comes from it often detected at advanced stages, current treatments such as chemotherapy or radiotherapy are not very effective, leading to a low 5-year survival rate. Therefore, discovering new therapeutic approaches that target the processes contributing to ovarian tumor formation and metastasis is urgently needed. Among them, regulating cell death processes is emerging as a promising therapy for eliminating cancer including ovarian cancer. Many scientists have been researching and clinically testing methods and drug molecules to control cell death processes consisting of apoptosis, necroptosis, ferroptosis, cuproptosis, or pyroptosis to destroy tumors. In this work, we displayed an overview about the importance of cell death in the control of ovarian carcinoma cells. According to the current knowledge of the mechanisms of cell death, targeted drugs and approaches have been studied to modulate the activation/inhibition of this process in the treatment of ovarian tumor. Thanks to that, new hopes are explored to help improve the effectiveness of cancer diagnosis and treatment.

卵巢癌是女性最主要的妇科健康问题之一,它不仅对女性而且对全人类都造成了巨大的疾病负担。这种疾病的巨大负担来自于它经常在晚期被发现,目前的治疗方法,如化疗或放疗不是很有效,导致5年生存率很低。因此,迫切需要发现针对卵巢肿瘤形成和转移过程的新治疗方法。其中,调节细胞死亡过程正成为消除包括卵巢癌在内的癌症的一种有希望的治疗方法。许多科学家一直在研究和临床测试控制细胞死亡过程的方法和药物分子,包括凋亡,坏死,铁下垂,铜下垂或焦下垂,以破坏肿瘤。在这项工作中,我们展示了细胞死亡在卵巢癌细胞控制中的重要性的概述。根据目前对细胞死亡机制的了解,已经研究了靶向药物和方法来调节卵巢肿瘤治疗中细胞死亡过程的激活/抑制。正因为如此,人们探索了新的希望,以帮助提高癌症诊断和治疗的有效性。
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引用次数: 0
Preface. 前言。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1016/S1877-1173(25)00011-0
Vijai Singh
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引用次数: 0
Molecular crowding and amyloidogenic self-assembly: Emergent perspectives from modern computations. 分子拥挤和淀粉样蛋白自组装:从现代计算的新兴观点。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-21 DOI: 10.1016/bs.pmbts.2024.10.001
Hindol Chatterjee, Neelanjana Sengupta

In recent decades, the conventional protein folding paradigm has been challenged by intriguing properties of disordered peptide sequences that do not adopt stably folded conformations. Such intrinsically disordered proteins and protein regions (IDPs and IDRs) are poised uniquely in biology due to their propensity for self-aggregation, amyloidogenesis, and correlations with a cluster of debilitating diseases. Complexities underlying their structural and functional manifestations are enhanced in the presence of molecular crowding via non-specific protein-protein and protein-solvent contacts. Enabled by technological advances, physics-based algorithms, and data science, modern computer simulations provide unprecedented insights into the structure, function, dynamics, and thermodynamics of complex macromolecular systems. These characteristics are frequently correlated and manifest into unique observables. This chapter presents an overview of how such methodologies can lend insights and drive investigations into the molecular trifecta of crowding, protein self-aggregation, and amyloidogenesis. It begins with a general overview of disordered proteins in relation to biological function and of a suite of relevant experimental methods. Specific examples are showcased in the biological context. This is followed by a description of the computational approaches that supplant experimental efforts, with an elaboration on enhanced molecular simulation methods. The chapter concludes by alluding to expanded possibilities in disease amelioration.

近几十年来,传统的蛋白质折叠模式受到了不采用稳定折叠构象的无序肽序列的有趣特性的挑战。这种内在无序的蛋白质和蛋白质区域(IDPs和IDRs)由于其自聚集、淀粉样蛋白形成的倾向以及与一系列衰弱性疾病的相关性,在生物学中处于独特的地位。在非特异性蛋白质-蛋白质和蛋白质-溶剂接触的分子拥挤中,其结构和功能表现的复杂性得到增强。在技术进步、基于物理的算法和数据科学的推动下,现代计算机模拟为复杂大分子系统的结构、功能、动力学和热力学提供了前所未有的见解。这些特征经常是相互关联的,并表现为独特的可观测值。本章概述了这些方法如何能够提供见解并推动对拥挤、蛋白质自聚集和淀粉样蛋白形成的分子三重奏的调查。它从与生物功能和一套相关实验方法有关的无序蛋白质的总体概述开始。具体的例子在生物学的背景下展示。接下来是对取代实验努力的计算方法的描述,并详细介绍了增强的分子模拟方法。本章最后暗指疾病改善的扩展可能性。
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引用次数: 0
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Progress in Molecular Biology and Translational Science
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