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COVID-19: Perspectives on innate immune evasion. COVID-19:对先天免疫逃避的看法。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-03-19 DOI: 10.1016/bs.pmbts.2024.03.002
Alaa A A Aljabali, Mohamed El-Tanani, Debmalya Barh, Murtaza M Tambuwala

The ongoing global health challenges posed by the SARS-CoV-2, the virus responsible for the COVID-19 pandemic, necessitate a deep understanding of its intricate strategies to evade the innate immune system. This chapter aims to provide insights into the sophisticated mechanisms employed by SARS-CoV-2 in its interaction with pattern recognition receptors (PRRs), with particular emphasis on Toll-like receptors (TLRs) and RIG-I-like receptors (RLRs). By skillfully circumventing these pivotal components, the virus manages to elude detection and impairs the initiation of crucial antiviral immune responses. A notable aspect of SARS-CoV-2's immune evasion tactics lies in its strategic manipulation of cytokine production. This orchestrated modulation disrupts the delicate balance of inflammation, potentially leading to severe complications, including the notorious cytokine storm. In this regard, key viral proteins, such as the spike protein and nucleocapsid protein, emerge as pivotal players in the immune evasion process, further highlighting their significance in the context of COVID-19 pathogenesis. Acquiring a comprehensive understanding of these intricate immune evasion mechanisms holds immense promise for the development of effective treatments against COVID-19. Moreover, it is imperative for vaccine development to consider these evasion strategies to maximize vaccine efficacy. Future therapeutic interventions may involve targeting alternative pathways or augmenting the antiviral immune responses, thereby mitigating the impact of immune evasion, and fostering successful outcomes. By unraveling the underlying mechanisms of innate immune evasion, we advance our comprehension of COVID-19 pathogenesis and pave the way for the development of innovative therapeutic strategies. This comprehensive understanding catalyzes progress, enabling researchers and clinicians to devise novel approaches that combat the challenges posed by SARS-CoV-2 and ultimately improve patient outcomes.

导致COVID-19大流行的SARS-CoV-2病毒持续对全球健康构成挑战,有必要深入了解其逃避先天免疫系统的复杂策略。本章旨在深入了解SARS-CoV-2与模式识别受体(PRRs)相互作用的复杂机制,特别强调toll样受体(TLRs)和rig - i样受体(rlr)。通过巧妙地绕过这些关键成分,病毒设法逃避检测并损害关键抗病毒免疫反应的启动。SARS-CoV-2的免疫逃避策略的一个值得注意的方面是其战略性地操纵细胞因子的产生。这种精心安排的调节破坏了炎症的微妙平衡,可能导致严重的并发症,包括臭名昭著的细胞因子风暴。在这方面,刺突蛋白和核衣壳蛋白等关键病毒蛋白在免疫逃避过程中发挥了关键作用,进一步凸显了它们在COVID-19发病机制中的重要性。全面了解这些复杂的免疫逃避机制,为开发有效的COVID-19治疗方法带来了巨大的希望。此外,疫苗开发必须考虑这些规避策略,以最大限度地提高疫苗效力。未来的治疗干预可能涉及靶向替代途径或增强抗病毒免疫反应,从而减轻免疫逃避的影响,并促进成功的结果。通过揭示先天免疫逃避的潜在机制,我们推进了对COVID-19发病机制的理解,并为开发创新治疗策略铺平了道路。这种全面的了解促进了进展,使研究人员和临床医生能够设计出新的方法来应对SARS-CoV-2带来的挑战,并最终改善患者的治疗效果。
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引用次数: 0
Impact of COVID-19 on preexisting comorbidities. COVID-19对先前存在的合并症的影响。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-31 DOI: 10.1016/bs.pmbts.2024.10.002
Rasha Ashmawy, Esraa Abdellatif Hamouda, Sally Zeina, Sandy Sharaf, Sara Erfan, Elrashdy M Redwan

COVID-19 is a highly contagious viral disease caused by SARS-CoV-2, leading to a tragic global pandemic, where it was ranked in 2020 as the third leading cause of death in the USA, causing approximately 375,000 deaths, following heart disease and cancer. The CDC reports that the risk of death increases with age and preexisting comorbidities such as such as hypertension, diabetes, respiratory system disease, and cardiovascular disease. this report will delineate and analyze the paramount comorbidities and their repercussions on individuals infected with SARS-CoV-2.

COVID-19是一种由SARS-CoV-2引起的高度传染性病毒性疾病,导致了一场悲剧性的全球大流行,在2020年被列为美国第三大死亡原因,造成约37.5万人死亡,仅次于心脏病和癌症。美国疾病控制与预防中心报告称,死亡风险随着年龄和高血压、糖尿病、呼吸系统疾病和心血管疾病等先前存在的合并症而增加。本报告将描述和分析最重要的合并症及其对SARS-CoV-2感染者的影响。
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引用次数: 0
The Huntington's disease drug pipeline: a review of small molecules and their therapeutic targets. 亨廷顿氏病药物管道:小分子及其治疗靶点综述。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-10-16 DOI: 10.1016/bs.pmbts.2024.08.006
Sameera Khan, Nargis Bano, Vladimir N Uversky, Shakir Ahamad, Shahnawaz Ali Bhat

Huntington's disease (HD) is a progressive neurodegenerative condition resulting from a CAG repeat expansion in the huntingtin gene (HTT). Recent advancements in understanding HD's cellular and molecular pathways have paved the way for identifying various effective small-molecule candidates to treat the disorder. Two small molecules, Tetrabenazine and Deutetrabenazine, are approved for managing chorea associated with HD, and several others are under clinical trials. Notably, the field of small-molecule therapeutics targeting HD is rapidly progressing, and there is anticipation of their approval in the foreseeable future. This chapter provides a comprehensive overview of the emergence of small-molecule therapeutics in various stages of clinical development for HD therapy. The emphasis is placed on detailing their structural design, therapeutic effects, and specific mechanisms of action. Additionally, exploring key drivers implicated in HD pathogenesis offers valuable insights, as a foundational principle for designing prospective anti-HD therapeutic leads.

亨廷顿氏病(HD)是一种进行性神经退行性疾病,由亨廷顿基因(HTT) CAG重复扩增引起。最近在了解HD的细胞和分子途径方面取得的进展为确定各种有效的小分子候选药物来治疗这种疾病铺平了道路。两种小分子,Tetrabenazine和Deutetrabenazine,被批准用于治疗HD相关舞蹈病,其他几种正在临床试验中。值得注意的是,针对HD的小分子疗法正在迅速发展,预计在可预见的未来将获得批准。本章全面概述了小分子疗法在HD治疗临床发展的各个阶段的出现。重点是详细介绍它们的结构设计、治疗效果和具体的作用机制。此外,探索HD发病机制中的关键驱动因素提供了有价值的见解,作为设计前瞻性抗HD治疗先导的基础原则。
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引用次数: 0
Preface. 前言。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1016/S1877-1173(25)00177-2
Vijay Kumar Prajapati
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引用次数: 0
Strategies for inhibiting amyloid fibrillation: Current status and future prospects. 抑制淀粉样蛋白颤动的策略:现状和未来展望。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-21 DOI: 10.1016/bs.pmbts.2024.09.001
Md Nadir Hassan, Murtaza Hussain, Rizwan Hasan Khan

One of the hallmarks of multiple neurodegenerative diseases, such as Alzheimer's and Parkinson's diseases, is deposition of insoluble amyloid fibrils, which are toxic proteinaceous structures containing cross β-sheets. Several inhibitory strategies have been devised by researchers to impede or slow down the generation of such toxic species. Small compounds, peptides, and antibodies have been studied as possible inhibitors to interfere with key steps in amyloid production. Furthermore, adjusting environmental variables, such as temperature and pH have been known to impact the amyloid fibrillation process. Additionally, strategies are also available to reduce the possibility of protein misfolding so as to inhibit the subsequent development of fibrils, simply by stabilizing native protein conformations. It is very promising to develop targeted inhibitory therapies and comprehend the complexities of amyloid fibrillation in order to develop effective therapeutics to slow the progression of neurodegenerative disorders linked to misfolding and aggregation of proteins.

多种神经退行性疾病(如阿尔茨海默病和帕金森病)的特征之一是不溶性淀粉样原纤维的沉积,这是一种含有交叉β片的有毒蛋白质结构。研究人员设计了几种抑制策略来阻止或减缓这些有毒物种的产生。小化合物、多肽和抗体已被研究作为干扰淀粉样蛋白产生关键步骤的可能抑制剂。此外,调节环境变量,如温度和pH值也会影响淀粉样蛋白纤颤过程。此外,也有一些策略可以通过稳定天然蛋白质构象来降低蛋白质错误折叠的可能性,从而抑制原纤维的后续发育。为了开发有效的治疗方法来减缓与蛋白质错误折叠和聚集相关的神经退行性疾病的进展,开发有针对性的抑制疗法和理解淀粉样蛋白纤维性颤的复杂性是非常有希望的。
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引用次数: 0
Role and relation of cell death in Alzheimer's disease. 细胞死亡在阿尔茨海默病中的作用和关系。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-01 DOI: 10.1016/bs.pmbts.2025.06.024
Duc Anh Hoang, Duc Anh Le, Thi My Hanh Do, Van Thai Than

Alzheimer's disease (AD), caused by damage to the brain's nerve cells, is a progressive neurodegenerative disease that insidiously erodes cognitive function, and primarily affecting elderly adults. AD is associated with a considerable economic burden arising from multiple expenditure categories. The programed cell death, in normal cells, plays importance roles in biological processes, ensuring homeostasis and controlling development in multicellular organisms. However, AD is characterized by a high degree of pathological-related neuronal death, which is observable in various regions of the brain. This chapter aims to examine the diverse forms of cell death involved in AD, including apoptosis, necroptosis, autophagy-related cell death, and excitotoxicity; as well as elucidates the molecular mechanisms linking cell death to AD pathogenesis, including amyloid-beta, tau pathology, neuroinflammation, mitochondrial dysfunction, and genetic factors. Targeting these cell death pathways offers a promising avenue for future AD therapeutics and drug development.

阿尔茨海默病(AD)是一种由大脑神经细胞损伤引起的进行性神经退行性疾病,它会潜移默化地侵蚀认知功能,主要影响老年人。AD与多种支出类别造成的相当大的经济负担有关。在正常细胞中,程序性细胞死亡在生物过程中起着重要的作用,保证了多细胞生物的体内平衡并控制了其发育。然而,阿尔茨海默病的特点是高度的病理性相关神经元死亡,这在大脑的各个区域都可以观察到。本章旨在研究AD中涉及的各种形式的细胞死亡,包括凋亡、坏死坏死、自噬相关的细胞死亡和兴奋毒性;并阐明了将细胞死亡与AD发病机制联系起来的分子机制,包括淀粉样蛋白- β、tau病理、神经炎症、线粒体功能障碍和遗传因素。靶向这些细胞死亡途径为未来的阿尔茨海默病治疗和药物开发提供了一条有希望的途径。
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引用次数: 0
Cell death triad: Integrating apoptotic, autophagic, and necrotic cell death mechanisms. 细胞死亡三位一体:整合凋亡、自噬和坏死细胞死亡机制。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-01 DOI: 10.1016/bs.pmbts.2025.06.017
Sarthak Dhar, Kirti Baghel, Sramona Kar, Sanjana Mehrotra, Vijay Kumar Prajapati

Cell death mechanisms represent fundamental biological processes essential for homeostasis, development, and disease response. Recent advances have expanded our comprehension of these processes and contributed to the identification of novel mechanisms that orchestrate these processes. Apoptosis, a well-characterized form of cell death involving characteristic morphological changes and multiple enzymes that orchestrate the biochemical process, with minimal damage to surrounding cells or tissues and clearing off the apoptotic bodies by phagocytic cells. Dysregulation in the biochemical process could eventually lead to various pathologies including cancer and neurodegenerative disorders. Autophagy primarily a cell survival process that recycles cellular components, can paradoxically contribute to cell death under specific conditions especially when apoptosis is inhibited. Necrosis, once considered purely accidental, is now recognized to include regulated forms such as necroptosis, with defined molecular triggers and execution pathways. In this review, we will explore a general overview of the current comprehension of these major known cell death pathways such as apoptosis, autophagic cell death, necrosis, and necroptosis along with their crosstalk and potential targets in the biochemical mechanisms for therapeutic modulation of these processes that have major clinical implications.

细胞死亡机制是体内平衡、发育和疾病反应所必需的基本生物学过程。最近的进展扩大了我们对这些过程的理解,并有助于确定协调这些过程的新机制。细胞凋亡是一种很有特征的细胞死亡形式,涉及特征性的形态变化和多种酶,这些酶协调生化过程,对周围细胞或组织的损害最小,并由吞噬细胞清除凋亡小体。生化过程中的失调最终可能导致各种病理,包括癌症和神经退行性疾病。自噬主要是一种细胞存活过程,循环利用细胞成分,在特定条件下,特别是当细胞凋亡受到抑制时,可能会导致细胞死亡。坏死,曾经被认为是纯粹偶然的,现在被认为包括受调节的形式,如坏死性下垂,具有明确的分子触发和执行途径。在这篇综述中,我们将探讨目前对细胞凋亡、自噬细胞死亡、坏死和坏死下垂等主要已知细胞死亡途径的理解,以及它们之间的相互作用,以及对这些过程进行治疗性调节的生化机制中的潜在靶点,这些过程具有重要的临床意义。
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引用次数: 0
The impact of COVID-19 on autoimmune diseases. COVID-19对自身免疫性疾病的影响。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-02-25 DOI: 10.1016/bs.pmbts.2025.01.007
Altijana Hromić-Jahjefendić, Abas Sezer, Irma Mahmuljin

Various autoantibodies, such as antinuclear antibodies (ANA), anti-Ro/SSA, rheumatoid factor, lupus anticoagulant, and antibodies against interferon type I (IFN-I), have been frequently detected in COVID-19 patients, indicating a significant prevalence of autoimmune reactions following viral exposure. Additionally, the identification of human proteins with structural similarities to SARS-CoV-2 peptides as potential autoantigens underscores the complex interplay between the virus and the immune system in triggering autoimmunity. The chapter discusses probable pathways contributing to COVID-19-related autoimmunity, including bystander activation due to hyperinflammatory states, viral persistence, and the formation of neutrophil extracellular traps. These mechanisms illuminate a spectrum of autoimmune-related symptoms that can manifest, ranging from organ-specific to systemic autoimmune and inflammatory diseases. Importantly, there is emerging evidence of de novo autoimmunity arising after COVID-19 infection or vaccination, where new autoimmune conditions develop in previously healthy individuals. While various COVID-19 vaccines have received emergency use authorization, concerns regarding potential autoimmune side effects persist. Ongoing research is crucial to clarify these relationships and enhance our understanding of the risks associated with COVID-19 infections and vaccinations.

在COVID-19患者中经常检测到各种自身抗体,如抗核抗体(ANA)、抗ro /SSA、类风湿因子、狼疮抗凝剂和抗I型干扰素(IFN-I)抗体,表明病毒暴露后自身免疫反应的显著流行。此外,鉴定出与SARS-CoV-2肽结构相似的人类蛋白作为潜在的自身抗原,强调了病毒与免疫系统在触发自身免疫方面的复杂相互作用。本章讨论了导致covid -19相关自身免疫的可能途径,包括高炎症状态导致的旁观者激活、病毒持续存在和中性粒细胞细胞外陷阱的形成。这些机制阐明了一系列可表现的自身免疫相关症状,从器官特异性到系统性自身免疫和炎症性疾病。重要的是,新出现的证据表明,在COVID-19感染或接种疫苗后会产生新生自身免疫,在先前健康的个体中会出现新的自身免疫性疾病。虽然各种COVID-19疫苗已获得紧急使用授权,但对潜在自身免疫副作用的担忧仍然存在。正在进行的研究对于澄清这些关系并加强我们对COVID-19感染和疫苗接种相关风险的理解至关重要。
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引用次数: 0
Factors responsible for alpha-Synuclein aggregation. 负责α -突触核蛋白聚集的因子。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-25 DOI: 10.1016/bs.pmbts.2024.11.004
Khuraijam Surjalal Singh, Rahul Verma, Nagendra Singh, Laishram Rajendrakumar Singh, Akshita Gupta

Aggregation of α-Synuclein (α-Syn) is the hallmark of the pathophysiology of Parkinson's disease. Apart from aggregates, α-Syn can exist in multiple abnormal forms such as oligomers, protofibrils, fibrils amorphous aggregates etc. These forms initiate aggressive, selective and progressive neuronal atrophy through various modes such as mitochondrial dysfunction, lysosomal malfunction, and disruption of calcium homeostasis in various α-Syn-related neurodegenerative disorders. Structurally α-Syn is divided into three domains: N-terminal region made by amino acids1-67 (amphipathic, lysine-rich and interacts with acidic lipid membranes), Non-amyloid-β component (NAC) region made by amino acids 67-95 (hydrophobic region, central to α-syn aggregation) and C-terminal region made by amino acids 96-140 (acidic and proline-rich region responsible for interaction with other proteins). α-Syn follows the pattern of a typical intrinsically disordered protein and lacks a proper folded conformation and exist majorly in a random coil form, though on lipid binding the protein assumes an α-helical structure. The central random coil region of α-Syn is involved in fibril formation transforming into β-sheet rich secondary structures which is a characteristic of amyloids. This chapter entails an elaborate explanation of factors influencing the structure, function and aggregation of α-Syn. Major factors being abnormally high physiological expression of the protein, mutations, posttranslational modifications and also interactions with small molecules such as osmolytes in the cellular milieu. Studying the factors responsible for misfolding and aggregation of α-Syn along with the mechanism involved is crucial to understanding their implications in Parkinson's disease, and will yield valuable insights into disease mechanisms, potential therapeutic strategies.

α-突触核蛋白(α-Syn)的聚集是帕金森病病理生理的标志。除聚集体外,α-Syn还能以低聚物、原原纤维、原原纤维、非晶态聚集体等多种异常形式存在。在各种α-突触相关的神经退行性疾病中,这些形式通过线粒体功能障碍、溶酶体功能障碍和钙稳态破坏等多种模式引发侵袭性、选择性和进行性神经元萎缩。α-Syn在结构上分为3个结构域:由氨基酸s1-67组成的n端区(两亲性,富含赖氨酸,与酸性脂膜相互作用),由氨基酸67-95组成的非淀粉样蛋白-β组分(NAC)区(疏水区,α-Syn聚集的中心)和由氨基酸96-140组成的c端区(酸性和富含脯氨酸区,负责与其他蛋白质相互作用)。α-Syn遵循典型的内在无序蛋白的模式,缺乏适当的折叠构象,主要以随机线圈形式存在,尽管在脂质结合时蛋白质呈α-螺旋结构。α-Syn的中心随机线圈区参与了淀粉样蛋白的特征,即原纤维的形成转化为富含β-片的二级结构。本章详细阐述了α-Syn的结构、功能和聚集的影响因素。主要因素是蛋白质异常高的生理表达、突变、翻译后修饰以及与细胞环境中的小分子(如渗透物)的相互作用。研究α-Syn错误折叠和聚集的相关因素及其机制对于理解其在帕金森病中的意义至关重要,并将为疾病机制和潜在的治疗策略提供有价值的见解。
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引用次数: 0
Cell death mechanisms in Drosophila: Responses to infectious challenges. 果蝇的细胞死亡机制:对感染挑战的反应。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-31 DOI: 10.1016/bs.pmbts.2025.07.002
Gaurav Yadav, Shrishti Mitra, Raunak Gupta, Prachi Mishra, Dau Dayal Aggarwal

Cell death, a highly conserved and regulated process, plays a key role in development of an organism, immune responses, and tissue homeostasis. Often viewed in a negative light, it tightly regulates the proper balance of cell numbers and this fine balance carries the weight of life. In Drosophila melanogaster, a well-established genetic model, several forms of cell death including autophagy, apoptosis, and necrosis-like pathways are observed in response to the diverse bodily signals and infections. These distinct cell deaths are triggered through specific signaling pathways such as the Jun N-terminal kinase (JNK) pathway, the Toll and Imd immune pathways, and mitochondrial reactive oxygen species (ROS) mediated responses. This chapter explores the molecular regulation of these cell death pathways, emphasizing tissue-specific responses in Drosophila during bacterial and fungal infections. By understanding how various tissues, including the brain, gut, fat body, and muscles, differentially regulate cell death, we gain valuable insights into evolutionarily conserved strategies for host defense. Understanding these mechanisms helps reveal key biological principles relevant to immunity, pathology, and therapeutic development.

细胞死亡是一个高度保守和受调控的过程,在生物体的发育、免疫反应和组织稳态中起着关键作用。通常从消极的角度来看,它严格地调节着细胞数量的适当平衡,而这种微妙的平衡承载着生命的重量。在黑腹果蝇(Drosophila melanogaster)这一成熟的遗传模型中,可以观察到多种形式的细胞死亡,包括自噬、凋亡和坏死样途径,以响应各种身体信号和感染。这些不同的细胞死亡是通过特定的信号通路触发的,如Jun n -末端激酶(JNK)途径、Toll和Imd免疫途径以及线粒体活性氧(ROS)介导的反应。本章探讨了这些细胞死亡途径的分子调控,强调了果蝇在细菌和真菌感染期间的组织特异性反应。通过了解包括大脑、肠道、脂肪体和肌肉在内的各种组织如何以不同的方式调节细胞死亡,我们对宿主防御的进化保守策略获得了有价值的见解。了解这些机制有助于揭示与免疫、病理和治疗发展相关的关键生物学原理。
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引用次数: 0
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