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Phage for treatment of Vibrio cholerae infection. 用于治疗霍乱弧菌感染的噬菌体。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-04-17 DOI: 10.1016/bs.pmbts.2023.03.021
Milky Mittal, Surbhi Tripathi, Ashok Saini, Indra Mani

Bacteriophages (or "phages") are ubiquitous and the amplest biological entities on our planet. It is a natural enemy of bacteria. Cholera is one of the most known diseases to cause multiple pandemics around the world, killing millions of people. The pathogen of cholera is Vibrio species. Up until the emergence of multidrug resistance, preventive therapeutics like antibiotics were the most effective means of battling bacteria. Globally, one of the most significant challenges in treating microbial infections is the development of drug-resistant strains. Based on their antibacterial properties and unique characteristics, phages are being comprehensively evaluated taxonomically. Moreover, phage-based vaccination is evolving as one of the most encouraging preventive approaches. Due to this, its related research got remarkable recognition. However, due to the rapid emergence of bacterial resistance to antibiotics, the use of phages (phage therapy) could be a major motive for research because the most promising solution lies in bacteriophages. This chapter briefly highlights the promising use of bacteriophages to combat Vibrio-related infectious diseases.

噬菌体(或称“噬菌体”)无处不在,是我们星球上最典型的生物实体。它是细菌的天敌。霍乱是导致世界各地多种流行病的最常见疾病之一,导致数百万人死亡。霍乱的病原体是弧菌。在出现多药耐药性之前,抗生素等预防性治疗方法是对抗细菌最有效的手段。在全球范围内,治疗微生物感染的最重大挑战之一是开发耐药菌株。基于噬菌体的抗菌特性和独特的特性,噬菌体正在进行全面的分类评估。此外,基于噬菌体的疫苗接种正在发展成为最令人鼓舞的预防方法之一。正因如此,其相关研究得到了显著的认可。然而,由于细菌对抗生素的耐药性迅速出现,噬菌体的使用(噬菌体疗法)可能是研究的主要动机,因为最有前途的解决方案在于噬菌体。本章简要介绍了噬菌体在对抗弧菌相关传染病方面的应用前景。
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引用次数: 0
Phage design and directed evolution to evolve phage for therapy. 噬菌体设计和定向进化,进化出用于治疗的噬菌体。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-06-19 DOI: 10.1016/bs.pmbts.2023.03.019
Priyancka Arora, Avni Jain, Ajay Kumar

Phage therapy or Phage treatment is the use of bacteriolysing phage in treating bacterial infections by using the viruses that infects and kills bacteria. This technique has been studied and practiced very long ago, but with the advent of antibiotics, it has been neglected. This foregone technique is now witnessing a revival due to development of bacterial resistance. Nowadays, with the awareness of genetic sequence of organisms, it is required that informed choices of phages have to be made for the most efficacious results. Furthermore, phages with the evolving genes are taken into consideration for the subsequent improvement in treating the patients for bacterial diseases. In addition, direct evolution methods are increasingly developing, since these are capable of creating new biological molecules having changed or unique activities, such as, improved target specificity, evolution of novel proteins with new catalytic properties or creation of nucleic acids that are capable of recognizing required pathogenic bacteria. This system is incorporates continuous evolution such as protein or genes are put under continuous evolution by providing continuous mutagenesis with least human intervention. Although, this system providing continuous directed evolution is very effective, it imposes some challenges due to requirement of heavy investment of time and resources. This chapter focuses on development of phage as a therapeutic agent against various bacteria causing diseases and it improvement using direct evolution of proteins and nucleic acids such that they target specific organisms.

噬菌体治疗或噬菌体治疗是利用噬菌体通过感染和杀死细菌的病毒来治疗细菌感染。这项技术很早以前就被研究和实践过,但随着抗生素的出现,它被忽视了。由于细菌耐药性的发展,这项被放弃的技术现在正在复兴。如今,随着对生物体基因序列的认识,必须对噬菌体进行知情的选择,才能获得最有效的结果。此外,具有进化基因的噬菌体被考虑用于随后治疗细菌性疾病患者的改进。此外,直接进化方法正在日益发展,因为这些方法能够产生具有改变或独特活性的新生物分子,例如提高的靶特异性、具有新催化性质的新蛋白质的进化或产生能够识别所需病原菌的核酸。该系统结合了连续进化,例如蛋白质或基因通过提供最少人为干预的连续诱变而处于连续进化之下。尽管这种提供连续定向进化的系统非常有效,但由于需要大量的时间和资源,它带来了一些挑战。本章重点介绍噬菌体作为对抗各种致病细菌的治疗剂的发展,以及利用蛋白质和核酸的直接进化来改善噬菌体,使其靶向特定生物体。
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引用次数: 0
Phages for treatment of Staphylococcus aureus infection. 治疗金黄色葡萄球菌感染的噬菌体。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-05-03 DOI: 10.1016/bs.pmbts.2023.03.027
Safia Samir

Combating multi-drug resistant bacterial infections should be a universal urgency. The gram- positive Staphylococcus aureus (S. aureus) bacteria are generally harmless; healthy people frequently have them on their skin and nose. These bacteria, for the most part, produce no difficulties or only minor skin diseases. Antibiotics and cleansing of the affected region are usually the treatments of choice. S. aureus can become virulent causing serious infections that may lead to pustules to sepsis or death. Normally, it is thought that antibiotics may solve problems concerning bacterial infection; but unfortunately, Staphylococci have evolved mechanisms to resist drugs. Methicillin-Resistant Staphylococcus aureus (MRSA); both in hospitals and in the community, infections are evolving into dangerous pathogens. Health care practitioners may need to use antibiotics with more adverse effects to treat antibiotic-resistant S. aureus infections. Amid existing efforts to resolve this problem, phage therapy proposes a hopeful alternate to face Staphylococcal infections. When the majority of antibiotics have failed to treat infections caused by multidrug-resistant bacteria, such as methicillin- and vancomycin-resistant S. aureus, phage therapy may be an option. Here, we appraise the potential efficacy, current knowledge on bacteriophages for S. aureus, experimental research and information on their clinical application, and limitations of phage therapy for S. aureus infections.

对抗耐多药细菌感染应该是一项普遍的紧迫任务。革兰氏阳性金黄色葡萄球菌(S.aureus)细菌通常是无害的;健康的人经常在皮肤和鼻子上涂它们。在大多数情况下,这些细菌不会产生任何困难,或者只会引起轻微的皮肤病。抗生素和清洗患处通常是首选的治疗方法。金黄色葡萄球菌可以变得致命,导致严重感染,可能导致脓疱、败血症或死亡。通常,人们认为抗生素可以解决有关细菌感染的问题;但不幸的是,葡萄球菌已经进化出了抵抗药物的机制。耐甲氧西林金黄色葡萄球菌;无论是在医院还是在社区,感染都在演变成危险的病原体。医护人员可能需要使用副作用更大的抗生素来治疗抗生素耐药性金黄色葡萄球菌感染。在现有解决这一问题的努力中,噬菌体疗法提出了一种有希望的替代方案来应对葡萄球菌感染。当大多数抗生素都无法治疗耐多药细菌引起的感染时,如耐甲氧西林和耐万古霉素的金黄色葡萄球菌,噬菌体治疗可能是一种选择。在这里,我们评估了噬菌体治疗金黄色葡萄球菌的潜在疗效、目前的知识、实验研究和临床应用信息,以及噬菌体治疗金金色葡萄球菌感染的局限性。
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引用次数: 0
Unlocking the potential of phages: Innovative approaches to harnessing bacteriophages as diagnostic tools for human diseases. 释放噬菌体的潜力:利用噬菌体作为人类疾病诊断工具的创新方法。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-04-20 DOI: 10.1016/bs.pmbts.2023.03.025
Vishnu Kirthi Arivarasan

Phages, viruses that infect bacteria, have been explored as promising tools for the detection of human disease. By leveraging the specificity of phages for their bacterial hosts, phage-based diagnostic tools can rapidly and accurately detect bacterial infections in clinical samples. In recent years, advances in genetic engineering and biotechnology have enabled the development of more sophisticated phage-based diagnostic tools, including those that express reporter genes or enzymes, or target specific virulence factors or antibiotic resistance genes. However, despite these advancements, there are still challenges and limitations to the use of phage-based diagnostic tools, including concerns over phage safety and efficacy. This review aims to provide a comprehensive overview of the current state of phage-based diagnostic tools, including their advantages, limitations, and potential for future development. By addressing these issues, we hope to contribute to the ongoing efforts to develop safe and effective phage-based diagnostic tools for the detection of human disease.

噬菌体是一种感染细菌的病毒,已被探索为检测人类疾病的有前途的工具。通过利用噬菌体对细菌宿主的特异性,基于噬菌体的诊断工具可以快速准确地检测临床样本中的细菌感染。近年来,基因工程和生物技术的进步使更复杂的基于噬菌体的诊断工具得以开发,包括那些表达报告基因或酶,或靶向特定毒力因子或抗生素抗性基因的工具。然而,尽管取得了这些进展,但基于噬菌体的诊断工具的使用仍然存在挑战和局限性,包括对噬菌体安全性和有效性的担忧。这篇综述旨在全面概述基于噬菌体的诊断工具的现状,包括它们的优势、局限性和未来发展的潜力。通过解决这些问题,我们希望为开发安全有效的噬菌体诊断工具以检测人类疾病的持续努力做出贡献。
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引用次数: 0
Phage for drug delivery vehicles. 用于药物输送车辆的噬菌体。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-06-17 DOI: 10.1016/bs.pmbts.2023.04.008
Mohit Kumar, Piyush Parkhey, Santosh Kumar Mishra, Prabir Kumar Paul, Avinash Singh, Vijai Singh

Viruses being the natural carriers of gene have been widely used as drug delivery systems. However, the commonly used eukaryotic viruses such as adenoviruses, retroviruses, and lentiviruses, besides efficiently targeting the cells, can also stimulate immunological response or disrupt tumour suppressor genes leading to cancer. Consequently, there has been an increase interest in the scientific fraternity towards exploring other alternatives, which are safer and equally efficient for drug delivery. Bacteriophages, in this context have been at the forefront as an efficient, reliable, and safer choice. Novel phage dependent technologies led the foundation of peptide libraries and provides way to recognising abilities and targeting of specific ligands. Hybridisation of phage with inorganic complexes could be an appropriate strategy for the construction of carrying bioinorganic carriers. In this chapter, we have tried to cover major advances in the phage species that can be used as drug delivery vehicles.

病毒作为基因的天然载体,已被广泛用作药物递送系统。然而,常用的真核病毒,如腺病毒、逆转录病毒和慢病毒,除了有效地靶向细胞外,还可以刺激免疫反应或破坏导致癌症的肿瘤抑制基因。因此,科学界对探索其他更安全、同样有效的替代药物越来越感兴趣。在这种情况下,噬菌体一直是一种高效、可靠和更安全的选择。新的噬菌体依赖性技术引领了肽库的建立,并为识别特定配体的能力和靶向提供了途径。噬菌体与无机复合物的杂交可能是构建携带生物无机载体的合适策略。在本章中,我们试图介绍可作为药物递送载体的噬菌体物种的主要进展。
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引用次数: 0
Exploring the potential of phage and their applications. 探索噬菌体的潜力及其应用。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-05-11 DOI: 10.1016/bs.pmbts.2023.04.001
Khushal Khambhati, Gargi Bhattacharjee, Nisarg Gohil, Rupesh Maurya, Vijai Singh

Antibiotic resistant microorganisms are significantly increasing due to horizontal gene transfer, mutation and overdose of antibiotics leading to serious health conditions globally. Several multidrug resistant microorganisms have shown resistance to even the last line of antibiotics making it very difficult to treat them. Besides using antibiotics, an alternative approach to treat such resistant bacterial pathogens through the use of bacteriophage (phage) was used in the early 1900s which however declined and vanished after the discovery of antibiotics. In recent times, phage has emerged and gained interest as an alternative approach to antibiotics to treat MDR pathogens. Phage can self-replicate by utilizing cellular machinery of bacterial host by following lytic and lysogenic life cycles and therefore suitable for rapid regeneration. Application of phage for detection of bacterial pathogens, elimination of bacteria, agents for controlling food spoilage, treating human disease and several others entitles phage as a futuristic antibacterial armamentarium.

由于水平基因转移、突变和抗生素过量导致全球严重的健康状况,抗生素耐药性微生物显著增加。一些多药耐药性微生物甚至对最后一种抗生素都表现出耐药性,这使得治疗它们变得非常困难。除了使用抗生素外,20世纪初还使用了一种通过使用噬菌体来治疗这种耐药细菌病原体的替代方法,但在发现抗生素后,这种方法逐渐衰落和消失。近年来,噬菌体作为抗生素治疗MDR病原体的替代方法出现并引起了人们的兴趣。噬菌体可以通过遵循裂解和裂解生命周期,利用细菌宿主的细胞机制进行自我复制,因此适合快速再生。噬菌体在检测细菌病原体、消灭细菌、控制食物腐败、治疗人类疾病等方面的应用使噬菌体成为一种未来的抗菌药物。
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引用次数: 0
Isolation, screening and characterization of phage. 噬菌体的分离、筛选和鉴定。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-04-07 DOI: 10.1016/bs.pmbts.2023.03.008
Bishoy Maher Zaki, Amira A Mohamed, Alyaa Dawoud, Kareem Essam, Zainab K Hammouda, Abdallah S Abdelsattar, Ayman El-Shibiny

Bacterial resistance threatens public health due to a lack of novel antibacterial classes since the 21st century. Bacteriophages, the most ubiquitous microorganism on Earth and natural predators of bacteria, have the potential to save the world from the post-antibiotic era. Therefore, phage isolation and characterization are in high demand to find suitable phages for therapeutic and bacterial control applications. The chapter presents brief guidance supported by recommendations on the isolation of phages, and initial screening of phage antimicrobial efficacy, in addition to, conducting comprehensive characterization addressing morphological, biological, genomic, and taxonomic features.

自21世纪以来,由于缺乏新型抗菌药物,细菌耐药性威胁着公众健康。噬菌体是地球上最普遍的微生物,也是细菌的天敌,有潜力将世界从后抗生素时代拯救出来。因此,噬菌体的分离和表征对于寻找用于治疗和细菌控制应用的合适噬菌体具有很高的需求。本章简要介绍了噬菌体分离和噬菌体抗菌功效初步筛选的建议,以及对形态学、生物学、基因组和分类学特征进行全面表征的建议。
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引用次数: 1
Phage and phage cocktails formulations. 噬菌体和噬菌体鸡尾酒配方。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-05-05 DOI: 10.1016/bs.pmbts.2023.04.007
Indra Mani

Antibiotic-resistant bacterial infection is a major global problem and can be life-threatening. Bacteriophages or phages can be substituted choice over traditional antibiotics treatments. Phages are natural obligate parasites viruses of bacteria, and they can infect and kill antibiotic-sensitive and -resistant bacteria. Further, phages can be utilised as antibacterial agents against various kinds of bacterial infectious diseases. As compared to antibiotics, phages can show a more variety of modes of action and can also be safe in several cases. Phages as a mixture (cocktail) of viral strains are usually used in clinical practices. Generally, to propagate phage cocktails, the individual phage is grown and then mixed to prepare phage cocktails. Antibiotic resistance and biofilm formation can be controlled through formulating phage cocktails that comprise phages infecting single species or by combining phages with non-phages (antibiotics), which may result in a broad spectrum of activity. This chapter briefly highlights the formulations and application of phage cocktails, which are being used to treat various bacterial infections.

抗生素耐药性细菌感染是一个重大的全球性问题,可能危及生命。噬菌体或噬菌体可以替代传统的抗生素治疗。噬菌体是细菌的天然专性寄生虫病毒,可以感染并杀死对抗生素敏感和耐药的细菌。此外,噬菌体可以用作对抗各种细菌感染性疾病的抗菌剂。与抗生素相比,噬菌体可以表现出更多样的作用模式,在某些情况下也是安全的。噬菌体作为病毒株的混合物(混合物)通常用于临床实践。通常,为了繁殖噬菌体混合物,培养单个噬菌体,然后混合以制备噬菌体混合物。抗生素耐药性和生物膜的形成可以通过配制噬菌体混合物来控制,噬菌体混合物包括感染单个物种的噬菌体,或者通过将噬菌体与非噬菌体(抗生素)结合来控制,这可能导致广谱的活性。本章简要介绍了噬菌体鸡尾酒的配方和应用,噬菌体鸡尾酒被用于治疗各种细菌感染。
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引用次数: 0
Phage engineering for development of diagnostic tools. 用于开发诊断工具的噬菌体工程。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-06-26 DOI: 10.1016/bs.pmbts.2023.04.004
Subha Sankar Paul

The bacteriophages rely on the host cell to provide energy and resources for their own replication. Antibody-based diagnostic tests rely on the antibody and the biomarker interactions. Since, most of these diagnostic tools employ the use of antibodies; hence, they require intensive storage protocols at cold conditions and incur high time and capital cost due to their production and purification process. Phage-based diagnostics can overcome this limitation. Bacteriophages, have been used as emerging tools for the detection of various pathogens. Rapid phage-mediated detection assays have become commercial diagnostic tools. Conventional method and new cloning approaches have been followed to specifically detect a disease- causing microbial strains. This review discusses use of Phage typing as diagnostic tools, phage-based detection methods, and their usage for signal amplification. Design rules for reporter phage engineering are also discussed followed by different engineering platforms for phage genome editing. We also discuss recent examples of how phage research is influencing the recent advances in the development of phage-based diagnostics for ultra-sensitive detection of various bio-species, outlining the advantages and limitations of detection technology of phage-based assays.

噬菌体依靠宿主细胞为自己的复制提供能量和资源。基于抗体的诊断测试依赖于抗体和生物标志物的相互作用。由于,这些诊断工具大多使用抗体;因此,它们需要在寒冷条件下的密集存储协议,并且由于它们的生产和纯化过程而产生高的时间和资本成本。基于噬菌体的诊断可以克服这一限制。噬菌体已被用作检测各种病原体的新兴工具。噬菌体介导的快速检测分析已成为商业诊断工具。传统的方法和新的克隆方法已经被用来专门检测致病微生物菌株。这篇综述讨论了噬菌体分型作为诊断工具的用途,基于噬菌体的检测方法,以及它们在信号扩增中的用途。还讨论了报道噬菌体工程的设计规则,随后讨论了噬菌体基因组编辑的不同工程平台。我们还讨论了噬菌体研究如何影响基于噬菌体的诊断技术的最新进展,用于各种生物物种的超灵敏检测,概述了基于噬菌体的检测技术的优势和局限性。
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引用次数: 0
Phages for treatment of Salmonella spp infection. 用于治疗沙门氏菌感染的噬菌体。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-04-14 DOI: 10.1016/bs.pmbts.2023.03.020
V Baskaran, L Karthik

Salmonella, is one of the bacterial genera having more than 2500 serogroups is one of the most prominent food borne pathogen that is capable of causing disease out breaks among humans and animals. Recent reports clearly shows that this pathogen is evolved and it developed drug resistant towards most of the commercially available antibiotics. In order to overcome this emerging resistance, Bacteriophage therapy is one of the alternative solutions. It is more pathogen specific, high potency, and thereby highly safe for consumption. This chapter discuss about Rapid screening and Detection Methods Associated with Bacteriophage for Salmonella, commercially available phage products and regulatory status, Salmonella endolysins and future prospects of phage therapy.

沙门氏菌是拥有2500多个血清群的细菌属之一,是最突出的食源性病原体之一,能够在人类和动物中引起疾病爆发。最近的报告清楚地表明,这种病原体是进化而来的,它对大多数商业上可用的抗生素产生了耐药性。为了克服这种新出现的耐药性,噬菌体疗法是替代方案之一。它更具病原体特异性,效力高,因此食用安全性高。本章讨论了与噬菌体相关的沙门氏菌的快速筛选和检测方法、市售噬菌体产品和监管现状、沙门氏菌内溶素以及噬菌体治疗的未来前景。
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引用次数: 0
期刊
Progress in Molecular Biology and Translational Science
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