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Germline Predisposition to Hematopoietic Malignancies: An Overview 造血恶性肿瘤的基因易感性:概述
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062822-112257
Yogameenakshi Haribabu, Emma Bhote, Lucy A. Godley
Deleterious germline variants are now recognized as common drivers of hematopoietic malignancies (HMs) and bone marrow failure syndromes. With the increasing use of personalized medicine and the application of tumor-based profiling via next-generation sequencing, diagnosis of HM predisposition occurs with increasing frequency. Although deleterious germline variants can be readily identified by comprehensive clinical testing, numerous barriers exist for many clinicians. Observations regarding particular germline predisposition disorders challenge widely held assumptions about these conditions. Here, we review approaches to germline genetic testing, highlighting key points in a typical patient's course that present challenges for testing and interpreting results. Increasing awareness by health care providers of these conditions and improvements in testing platforms are crucial for enabling a proactive approach to tailoring a suitable treatment plan and surveillance program for the patient and their family members.
目前,人们已认识到遗传基因变异是造血恶性肿瘤(HMs)和骨髓衰竭综合征的常见诱因。随着个性化医疗的日益普及,以及基于肿瘤的新一代测序分析技术的应用,对造血恶性肿瘤易感性的诊断也越来越频繁。虽然通过全面的临床检测可以很容易地识别出有害的种系变异,但许多临床医生仍面临许多障碍。对特定种系易感性疾病的观察结果挑战了人们对这些疾病的普遍假设。在此,我们回顾了种系基因检测的方法,并强调了典型患者病程中对检测和解释结果构成挑战的关键点。提高医疗服务提供者对这些疾病的认识和改进检测平台,对于积极主动地为患者及其家人量身定制合适的治疗方案和监控计划至关重要。
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引用次数: 0
Chemical Proteomics–Guided Discovery of Covalent Ligands for Cancer Proteins 化学蛋白质组学引导的癌症蛋白质共价配体的发现
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-061421-041946
Xiaoyu Zhang, Benjamin F. Cravatt
Advances in genome sequencing and editing technologies have enriched our understanding of the biochemical pathways that drive tumorigenesis. Translating this knowledge into new medicines for cancer treatment, however, remains challenging, and many oncogenic proteins have proven recalcitrant to conventional approaches for chemical probe and drug discovery. Here, we discuss how innovations in chemical proteomics and covalent chemistry are being integrated to identify and advance first-in-class small molecules that target cancer-relevant proteins. Mechanistic studies have revealed that covalent compounds perturb protein functions in cancer cells in diverse ways that include the remodeling of protein–protein and protein–RNA complexes, as well as through alterations in posttranslational modification. We speculate on the attributes of chemical proteomics and covalent chemistry that have enabled targeting of previously inaccessible cancer-relevant pathways and consider technical challenges that remain to be addressed in order to fully realize the druggability of the cancer proteome.
基因组测序和编辑技术的进步丰富了我们对驱动肿瘤发生的生化途径的认识。然而,将这些知识转化为治疗癌症的新药物仍具有挑战性,许多致癌蛋白质已被证明对化学探针和药物发现的传统方法具有顽抗性。在此,我们将讨论如何将化学蛋白质组学和共价化学的创新成果结合起来,以确定和推进针对癌症相关蛋白的一流小分子药物。机理研究表明,共价化合物能以多种方式扰乱癌细胞中的蛋白质功能,包括重塑蛋白质-蛋白质和蛋白质-RNA复合物,以及通过改变翻译后修饰。我们对化学蛋白质组学和共价化学的特性进行了推测,这些特性使得以前无法进入的癌症相关通路成为靶点,我们还考虑了为充分实现癌症蛋白质组的可药用性而有待解决的技术挑战。
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引用次数: 0
Studying Progression from Chronic Injury to Esophageal Adenocarcinoma 研究从慢性损伤到食管腺癌的发展过程
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062822-105541
Thea D. Tlsty
Cancer research seeks to understand the biology underlying the progression to malignant transformation. Recently, the incidence of esophageal adenocarcinoma (EAC) has increased dramatically, and if we understand why and how, we will be better equipped for diagnosis, prognosis, detection, prevention, and intervention. The earliest steps in progression for most malignancies are the most difficult to study. The initiation of cancer is believed to be a relatively rare and sporadic event, the locations and timings of which are most often unknown. Of the trillions of somatic cells in our bodies, only a few ever find themselves on a path to malignancy. However, chronic inflammation generates a metaplastic lesion that is directly linked to increased incidence of EAC and thus alerts us to the time and place that progression is initiated and allows us to study the biology. We describe recent studies that identify coordinated actions between stromal and epithelial cells that progress to EAC.
癌症研究旨在了解恶性转化的生物学基础。最近,食管腺癌(EAC)的发病率急剧上升,如果我们了解了发病原因和过程,就能更好地进行诊断、预后、检测、预防和干预。大多数恶性肿瘤进展的最初阶段是最难研究的。癌症的发生被认为是一个相对罕见的偶发事件,其发生的地点和时间通常是未知的。在我们体内数以万亿计的体细胞中,只有少数细胞发现自己走上了恶性肿瘤的道路。然而,慢性炎症产生的移行性病变与 EAC 发病率的增加直接相关,因此提醒我们注意疾病进展开始的时间和地点,并使我们能够研究其生物学特性。我们介绍了最近的一些研究,这些研究发现了基质细胞和上皮细胞之间的协调作用,这些作用导致了 EAC 的发展。
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引用次数: 0
Histone H3 Variants in the Multiverse of Cancer 癌症多重宇宙中的组蛋白 H3 变异
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062722-021823
Iva Simeonova, Geneviève Almouzni
Our understanding of cancer genomes has allowed for the integration of molecular data into histopathological classifications for routine stratification of patients. In the last 10–15 years, thanks to this systematic implementation of large-scale sequencing, the identification of hotspot somatic mutations in histone genes came into the limelight, underscoring the concept of oncohistones. As drivers in pediatric brain tumors, and in several other types of cancers, oncohistones brought a “new dimension of Strange” into the cancer multiverse, to paraphrase Marvel. An integrative approach to cancer complexity as a multidimensional projection is urgently needed to consider all relevant etiological, developmental, and evolutionary components. Here, we discuss recent progress on histone variants and chaperones, their regulation and alterations in cancers, the available in vivo models, and current treatment strategies. More specifically, we adopt a view through the lens of tissue-specific differences and means for genome expression and integrity maintenance.
我们对癌症基因组的了解使我们能够将分子数据整合到组织病理学分类中,对患者进行常规分层。在过去的 10-15 年中,得益于大规模测序的系统实施,组蛋白基因中热点体细胞突变的鉴定进入了人们的视线,凸显了oncohistones 的概念。作为小儿脑肿瘤和其他几种癌症的驱动因素,组蛋白基因突变为癌症的多重宇宙带来了 "新的奇异维度",用惊奇公司的话说就是 "新的奇异维度"。癌症的复杂性是一个多维投影,迫切需要一种综合方法来考虑所有相关的病因、发育和进化因素。在此,我们将讨论组蛋白变异和伴侣、它们在癌症中的调控和改变、可用的体内模型以及当前的治疗策略等方面的最新进展。更具体地说,我们将从组织特异性差异以及基因组表达和完整性维护手段的角度进行分析。
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引用次数: 0
An Erratic Path Toward Discovery 通向发现的崎岖之路
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062822-102816
Robert A. Weinberg
Through a series of accidents of history, my career began just when the revolution in molecular biology was taking place. The allure of molecular biology attracted me to exploiting tumor viruses as experimental models of the nucleic acid metabolism of cells. The fact that these viruses cause cancer was incidental but eventually led to an interest in cancer pathogenesis, exploiting them to understand the mechanisms of cell transformation. This made it possible to test the speculation that cell transformation derived from the mutation of cellular genes and that cancer cell behavior is driven by the actions of resulting mutant alleles of these genes. In 1979, we showed that cells that had been transformed by 3-methylcholanthrene carried a mutant oncogenic allele. This work progressed so that by 1982 my research group and others demonstrated that human bladder carcinoma cells carried a point-mutated RAS oncogene, providing a direct proof of the mutational theory of cancer pathogenesis.
由于一系列的历史偶然,我的职业生涯开始时,正值分子生物学革命。分子生物学的诱惑吸引我利用肿瘤病毒作为细胞核酸代谢的实验模型。这些病毒导致癌症的事实是偶然的,但最终导致了我对癌症发病机制的兴趣,利用它们来了解细胞转化的机制。这使我们有可能验证这样一种推测,即细胞转化源于细胞基因的突变,而癌细胞的行为是由这些基因的突变等位基因的作用所驱动的。1979 年,我们发现被 3-甲基胆蒽转化的细胞带有突变的致癌等位基因。随着这项工作的进展,到 1982 年,我的研究小组和其他研究小组证明,人类膀胱癌细胞携带点突变 RAS 致癌基因,直接证明了癌症发病的突变理论。
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引用次数: 0
YAP, TAZ, and Hippo-Dysregulating Fusion Proteins in Cancer 癌症中的 YAP、TAZ 和希波失调融合蛋白
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-061223-094639
Jordan H. Driskill, Josephine K. Dermawan, Cristina R. Antonescu, Duojia Pan
Gene fusions are well-known drivers of cancer and are potent targets for molecular therapy. An emerging spectrum of human tumors harbors recurrent and pathognomonic gene fusions that involve the transcriptional coactivator YAP1 (which encodes the protein YAP) or its paralog WWTR1 (which encodes the protein TAZ). YAP and TAZ are frequently activated in cancer and are the transcriptional effectors of the Hippo pathway, a highly conserved kinase cascade that regulates diverse functions such as organ size, development, and homeostasis. In this review, we discuss the tumors that have YAP, TAZ, or other Hippo-dysregulating fusion proteins; the mechanisms of these fusion proteins in driving their respective tumors; and the potential vulnerabilities of these chimeric oncoproteins across cancers of many origins. Furthermore, as new YAP1 and WWTR1 gene fusions are discovered, we provide a framework to predict whether the resulting protein product is likely to be oncogenic.
基因融合是众所周知的癌症驱动因素,也是分子治疗的有效靶点。一种新出现的人类肿瘤中反复出现的病理基因融合涉及转录辅激活因子YAP1(编码蛋白质YAP)或其同源物WWTR1(编码蛋白质TAZ)。YAP和TAZ在癌症中经常被激活,它们是Hippo通路的转录效应器,Hippo通路是一种高度保守的激酶级联,可调节器官大小、发育和稳态等多种功能。在这篇综述中,我们将讨论具有 YAP、TAZ 或其他 Hippo 失调融合蛋白的肿瘤;这些融合蛋白驱动各自肿瘤的机制;以及这些嵌合型肿瘤蛋白在多种起源的癌症中的潜在脆弱性。此外,随着新的 YAP1 和 WWTR1 基因融合的发现,我们提供了一个框架来预测所产生的蛋白产物是否可能是致癌的。
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引用次数: 0
Metabolic Rewiring During Metastasis: The Interplay Between the Environment and the Host 转移过程中的代谢重构:环境与宿主之间的相互作用
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062822-122840
Anke Vandekeere, Sarah El Kharraz, Patricia Altea-Manzano, Sarah-Maria Fendt
Following escape from the primary tumor, cancer cells face diverse micro-environments during the metastatic cascade. To survive and establish outgrowth at a distant site, metastasizing cancer cells must undergo metabolic reprogramming to adapt to the changing conditions. However, the host in which the tumors grow also experiences metabolic adaptations in response to various environmental factors that can mediate cancer progression. In this review, we highlight the endogenous factors that determine host metabolism (nutrient availability at specific organs or the microbiome), as well as exogenous factors that influence host metabolism systemically or locally (diet, alcohol, physical activity, air pollution, and circadian rhythm). Furthermore, we elaborate on how these environment-induced metabolic changes can affect metastatic progression. Understanding the interplay between environmental factors, host metabolism, and metastatic progression may unveil potential targets for future therapeutic interventions.
癌细胞逃离原发肿瘤后,在转移过程中会面临各种微环境。为了生存并在远处生长,转移癌细胞必须进行新陈代谢重编程,以适应不断变化的环境。然而,肿瘤生长的宿主也会因各种环境因素的影响而发生代谢适应性变化,而这些因素都可能介导癌症的发展。在这篇综述中,我们将重点介绍决定宿主新陈代谢的内源性因素(特定器官的营养供应或微生物组),以及系统性或局部性影响宿主新陈代谢的外源性因素(饮食、酒精、体力活动、空气污染和昼夜节律)。此外,我们还阐述了这些环境诱导的代谢变化如何影响转移进程。了解环境因素、宿主代谢和转移进展之间的相互作用可能会为未来的治疗干预揭示潜在的靶点。
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引用次数: 0
Mechanisms of Resistance to Targeted Therapies in AML 急性髓细胞性白血病靶向疗法的抗药性机制
Pub Date : 2024-06-18 DOI: 10.1146/annurev-cancerbio-062822-025055
Matthew F. Jones, Catherine C. Smith
The treatment of acute myeloid leukemia (AML) has historically relied on cytotoxic chemotherapy, but modern understanding of AML biology has paved the way for new treatments that target the molecular pathways that drive AML, in particular FLT3, IDH1/IDH2, and BCL2. Many of these targeted therapies are effective, but responses are typically short-lived and resistance remains a ubiquitous clinical problem. Understanding the mechanisms of resistance to targeted therapy is essential to continue improving AML therapy. Recent studies have shed new light on the ways in which AML evades targeted inhibition, including on-target resistance mutations, mutations in parallel molecular pathways, and plasticity in cellular state. In this review, we outline the mechanisms of resistance to commonly used targeted therapies in AML and discuss ideas to overcome the urgent problem of resistance.
急性髓性白血病(AML)的治疗历来依赖于细胞毒性化疗,但对 AML 生物学的现代认识为针对驱动 AML 的分子通路(尤其是 FLT3、IDH1/IDH2 和 BCL2)的新疗法铺平了道路。其中许多靶向疗法是有效的,但反应通常是短暂的,耐药性仍然是一个普遍存在的临床问题。了解靶向治疗的耐药机制对于继续改善急性髓细胞性白血病的治疗至关重要。最近的研究揭示了急性髓细胞性白血病逃避靶向抑制的新途径,包括靶向耐药突变、平行分子通路的突变以及细胞状态的可塑性。在这篇综述中,我们概述了急性髓细胞性白血病常用靶向疗法的耐药机制,并探讨了克服耐药这一紧迫问题的思路。
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引用次数: 0
The Intestinal Microbiota and Therapeutic Responses to Immunotherapy 肠道微生物群与免疫疗法的治疗反应
Pub Date : 2024-01-25 DOI: 10.1146/annurev-cancerbio-062722-035210
Pamela S. Herrera, Marcel van den Brink
The intestinal microbiota, a complex ecosystem of microorganisms, has emerged as an important player in modulating various aspects of human health and disease. The microbiota is in a state of constant cross talk with itself and its host, and these interactions regulate several aspects of host homeostasis, including immune responses. Studies have demonstrated a relationship between the microbiota and outcomes of several cancer immunotherapies. This review explores the different roles of the microbiota in shaping the efficacy and safety of cancer immunotherapies, including allogeneic hematopoietic cell transplantation, immune checkpoint blockade, and CAR T cell therapy.Expected final online publication date for the Annual Review of Cancer Biology, Volume 8 is April 2024. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
肠道微生物群是一个复杂的微生物生态系统,在调节人类健康和疾病的各个方面发挥着重要作用。微生物群与自身及其宿主之间不断进行交叉对话,这些互动调节着宿主平衡的多个方面,包括免疫反应。研究表明,微生物群与几种癌症免疫疗法的结果之间存在关系。这篇综述探讨了微生物群在影响癌症免疫疗法疗效和安全性方面的不同作用,包括异基因造血细胞移植、免疫检查点阻断和CAR T细胞疗法。《癌症生物学年度综述》第8卷的最终在线出版日期预计为2024年4月。修订后的预计日期请参见 http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 0
Therapeutic Discovery for Chromatin Complexes: Where Do We Stand? 染色质复合物的治疗发现:我们的现状如何?
Pub Date : 2024-01-12 DOI: 10.1146/annurev-cancerbio-062822-110356
Dominic D.G. Owens, Matthew E.R. Maitland, Cheryl H. Arrowsmith, Dalia Barsyte-Lovejoy
In this review, we explore the current landscape of preclinical and clinical therapeutics targeting epigenetic complexes in cancer, focusing on targets with enzymatic inhibitors, degraders, or ligands capable of disrupting protein–protein interactions. Current strategies face challenges such as limited single-agent clinical efficacy due to insufficient disruption of chromatin complexes and incomplete dissociation from chromatin. Further complications arise from the adaptability of cancer cell chromatin and, in some cases, dose-limiting toxicity. The advent of targeted protein degradation (TPD) through degrader compounds such as proteolysis-targeting chimeras provides a promising approach. These innovative molecules exploit the endogenous ubiquitin–proteasome system to catalytically degrade target proteins and disrupt complexes, potentially amplifying the efficacy of existing epigenetic binders. We highlight the status of TPD-harnessing moieties in clinical and preclinical development, as these compounds may prove crucial for unlocking the potential of epigenetic complex modulation in cancer therapeutics.Expected final online publication date for the Annual Review of Cancer Biology, Volume 8 is April 2024. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在这篇综述中,我们探讨了目前针对癌症表观遗传复合物的临床前和临床疗法的现状,重点关注具有酶抑制剂、降解剂或能够破坏蛋白质-蛋白质相互作用的配体的靶点。目前的策略面临着一些挑战,如由于染色质复合物破坏不充分以及与染色质的解离不完全,单一药物的临床疗效有限。癌细胞染色质的适应性以及某些情况下的剂量毒性限制也导致了更多的复杂问题。通过蛋白水解靶向嵌合体等降解化合物进行靶向蛋白降解(TPD)的出现提供了一种前景广阔的方法。这些创新分子利用内源性泛素-蛋白酶体系统催化降解靶蛋白并破坏复合物,有可能放大现有表观遗传结合剂的功效。我们重点介绍了TPD利用分子在临床和临床前开发中的状况,因为这些化合物可能被证明对释放表观遗传复合物调节在癌症治疗中的潜力至关重要。修订后的预计日期请参见 http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 0
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Annual Review of Cancer Biology
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