Julie-Pier Viau, Daniel Sigouin, Martin-Hugues St-Laurent
Old-growth forests harbor a large amount of complex structural features that result in a wide array of wildlife habitats. However, intensive forest management is gradually converting old-growth forest into younger, even-aged stands, reducing structural complexity and threatening the persistence of old-growth-dependent species. Maintaining elements of complex stand structure is critical to the conservation of old-growth forest specialists that use different habitat components at different periods of their annual cycle, and it requires a comprehensive understanding of seasonal variation in the habitat needs of these species. However, difficulties in observing free-ranging animals have sometimes limited our ability to assess such variations in habitat requirements, especially for small, elusive species. To address this, we used GPS telemetry collars to describe fine-scale habitat selection patterns of 6 male American Martens (Martes americana) during 2 contrasting periods of the year (snow-free, from mid-April to mid-November; snow-covered, from mid-November to mid-April), an objective formerly hard to achieve using conventional VHF telemetry. We used resource selection functions conducted at the fourth order of selection to compare habitat characteristics found at the sites used by martens (GPS locations, n = 100) to those found on an equal number of available sites (random points, n = 100) within each individual seasonal home range. We conducted vegetation surveys on these 200 sites to describe habitat and built candidate models representing different concurrent hypotheses. Our results showed that proxies of prey availability, predator avoidance, and thermal constraints were the primary factors influencing marten habitat selection during both periods, although their respective importance differed between periods. Martens selected sites with a high density of large-diameter snags (≥30·ha−1), high conifer canopy closure (≥53%), and a dense lateral cover (≥81%) during the snow-free period, but selected sites with a high volume of coarse woody debris (≥64 m3·ha−1) and high conifer canopy closure (≥48%) during the snow-covered period. Our results highlight the importance of contrasting seasonal changes in habitat selection patterns of small carnivores and may help maintain structural attributes in the landscape that are suitable for male American Martens.
{"title":"Seasonal shifts in the habitat selection patterns of male American Marten (Martes americana) at a fine spatial scale","authors":"Julie-Pier Viau, Daniel Sigouin, Martin-Hugues St-Laurent","doi":"10.1093/jmammal/gyae048","DOIUrl":"https://doi.org/10.1093/jmammal/gyae048","url":null,"abstract":"Old-growth forests harbor a large amount of complex structural features that result in a wide array of wildlife habitats. However, intensive forest management is gradually converting old-growth forest into younger, even-aged stands, reducing structural complexity and threatening the persistence of old-growth-dependent species. Maintaining elements of complex stand structure is critical to the conservation of old-growth forest specialists that use different habitat components at different periods of their annual cycle, and it requires a comprehensive understanding of seasonal variation in the habitat needs of these species. However, difficulties in observing free-ranging animals have sometimes limited our ability to assess such variations in habitat requirements, especially for small, elusive species. To address this, we used GPS telemetry collars to describe fine-scale habitat selection patterns of 6 male American Martens (Martes americana) during 2 contrasting periods of the year (snow-free, from mid-April to mid-November; snow-covered, from mid-November to mid-April), an objective formerly hard to achieve using conventional VHF telemetry. We used resource selection functions conducted at the fourth order of selection to compare habitat characteristics found at the sites used by martens (GPS locations, n = 100) to those found on an equal number of available sites (random points, n = 100) within each individual seasonal home range. We conducted vegetation surveys on these 200 sites to describe habitat and built candidate models representing different concurrent hypotheses. Our results showed that proxies of prey availability, predator avoidance, and thermal constraints were the primary factors influencing marten habitat selection during both periods, although their respective importance differed between periods. Martens selected sites with a high density of large-diameter snags (≥30·ha−1), high conifer canopy closure (≥53%), and a dense lateral cover (≥81%) during the snow-free period, but selected sites with a high volume of coarse woody debris (≥64 m3·ha−1) and high conifer canopy closure (≥48%) during the snow-covered period. Our results highlight the importance of contrasting seasonal changes in habitat selection patterns of small carnivores and may help maintain structural attributes in the landscape that are suitable for male American Martens.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"156 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140930884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lexi E Frank, Laramie L Lindsey, Evan J Kipp, Christopher Faulk, Suzanne Stone, Tanya M Roerick, Seth A Moore, Tiffany M Wolf, Peter A Larsen
Accurate taxonomic species identification is essential to the study of mammals. Despite this necessity, rapid and accurate identification of cryptic, understudied, and elusive mammals remains challenging. Traditional barcoding of mitochondrial genes is standard for molecular identification but requires time-consuming wet-lab methodologies. Recent bioinformatic advancements for nanopore sequencing data offer exciting opportunities for noninvasive and field-based identification of mammals. Nanopore adaptive sampling (NAS), a polymerase chain reaction (PCR)-free method, selectively sequences regions of DNA according to user-specified reference databases. Here, we utilized NAS to enrich mammalian mitochondrial genome sequencing to identify species. Fecal DNA extractions were sequenced from 9 mammals, several collected in collaboration with Minnesota Tribal Nations, to demonstrate utility for NAS barcoding of noninvasive samples. By mapping to the entire National Center for Biotechnology Information mammalian mitochondrial reference genome database and bioinformatically analyzing highly similar matches, we successfully produced species identifications for all fecal samples. Eight of 9 species identifications matched previous PCR or animal/fecal appearance-based identifications. For the ninth species, our genetic data indicate a misidentification stemming from the original study. Our approach has a range of applications—particularly in field-based wildlife research, conservation, disease surveillance, and monitoring of wildlife trade. Of importance to Minnesota tribes is invasive species monitoring, detections, and confirmation as climate impacts cause changes in biodiversity and shifts in species distributions. The rapid assessment techniques described here will be useful as new introductions and range expansions of native and invasive species may first be detected by the presence of signs such as scat rather than direct observations and will be helpful for chronically understaffed tribal natural resources agencies.
准确的物种分类鉴定对哺乳动物研究至关重要。尽管如此，快速准确地鉴定隐蔽的、研究不足的和难以捉摸的哺乳动物仍然具有挑战性。传统的线粒体基因条形码是分子鉴定的标准，但需要耗时的湿实验室方法。纳米孔测序数据在生物信息学方面的最新进展为非侵入性和野外鉴定哺乳动物提供了令人兴奋的机会。纳米孔自适应采样（NAS）是一种无需聚合酶链式反应（PCR）的方法，可根据用户指定的参考数据库对DNA区域进行选择性测序。在这里，我们利用 NAS 丰富哺乳动物线粒体基因组测序，以确定物种。我们对 9 种哺乳动物的粪便 DNA 提取物进行了测序，其中几种是与明尼苏达部落合作采集的，以证明 NAS 条形编码非侵入性样本的实用性。通过与整个美国国家生物技术信息中心哺乳动物线粒体参考基因组数据库进行映射，并对高度相似的匹配进行生物信息分析，我们成功地对所有粪便样本进行了物种鉴定。在 9 个物种鉴定中，有 8 个与之前基于 PCR 或动物/粪便外观的鉴定结果相吻合。对于第九个物种，我们的基因数据表明是源于原始研究的错误鉴定。我们的方法具有广泛的应用前景，特别是在基于野外的野生动物研究、保护、疾病监测和野生动物贸易监控方面。对明尼苏达部落来说，最重要的是入侵物种的监测、检测和确认，因为气候影响会导致生物多样性的变化和物种分布的转移。本文介绍的快速评估技术将非常有用，因为本地物种和入侵物种的新引进和范围扩大可能首先通过粪便等迹象的存在而不是直接观察来发现，这对长期人手不足的部落自然资源机构很有帮助。
{"title":"Rapid molecular species identification of mammalian scat samples using nanopore adaptive sampling","authors":"Lexi E Frank, Laramie L Lindsey, Evan J Kipp, Christopher Faulk, Suzanne Stone, Tanya M Roerick, Seth A Moore, Tiffany M Wolf, Peter A Larsen","doi":"10.1093/jmammal/gyae044","DOIUrl":"https://doi.org/10.1093/jmammal/gyae044","url":null,"abstract":"Accurate taxonomic species identification is essential to the study of mammals. Despite this necessity, rapid and accurate identification of cryptic, understudied, and elusive mammals remains challenging. Traditional barcoding of mitochondrial genes is standard for molecular identification but requires time-consuming wet-lab methodologies. Recent bioinformatic advancements for nanopore sequencing data offer exciting opportunities for noninvasive and field-based identification of mammals. Nanopore adaptive sampling (NAS), a polymerase chain reaction (PCR)-free method, selectively sequences regions of DNA according to user-specified reference databases. Here, we utilized NAS to enrich mammalian mitochondrial genome sequencing to identify species. Fecal DNA extractions were sequenced from 9 mammals, several collected in collaboration with Minnesota Tribal Nations, to demonstrate utility for NAS barcoding of noninvasive samples. By mapping to the entire National Center for Biotechnology Information mammalian mitochondrial reference genome database and bioinformatically analyzing highly similar matches, we successfully produced species identifications for all fecal samples. Eight of 9 species identifications matched previous PCR or animal/fecal appearance-based identifications. For the ninth species, our genetic data indicate a misidentification stemming from the original study. Our approach has a range of applications—particularly in field-based wildlife research, conservation, disease surveillance, and monitoring of wildlife trade. Of importance to Minnesota tribes is invasive species monitoring, detections, and confirmation as climate impacts cause changes in biodiversity and shifts in species distributions. The rapid assessment techniques described here will be useful as new introductions and range expansions of native and invasive species may first be detected by the presence of signs such as scat rather than direct observations and will be helpful for chronically understaffed tribal natural resources agencies.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"21 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140883730","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Matthew R Wood, J Low de Vries, Ara Monadjem, Wanda Markotter
Home range is an ecological concept that affects many aspects of the life of vertebrates and hence understanding how it varies between species is crucial. Mammalian home range size has been linked to body size and diet, but these studies were based predominantly on terrestrial species and most specifically excluded bats. As the only group of flying mammals, bats experience distinctly different constraints on movement, and hence home range. However, despite their diversity, relatively little is known about the home ranges of bats, and this is the first global review assessing correlates of their home range size. Our hypothesis is that home range will be impacted by different ecological conditions experienced by the bats and by the biological traits of the bats themselves. We performed a meta-analysis based on published data for 81 bat species to identify variables that contribute most to home range size. Sex, wing loading, functional group, colony size, dietary class, distance from the equator (latitudinal region), habitat type, and the interaction between habitat type and latitudinal region were all important explanatory variables. Wing loading was positively correlated with home range size—while females, open-air foragers, large colony sizes, and bats in temperate regions consistently had large home ranges. Understanding the correlates of home range has important implications, for example, for bat conservation and for assessing the risk of spillover of zoonotic pathogens from bats to humans and livestock.
{"title":"Review and meta-analysis of correlates of home range size in bats","authors":"Matthew R Wood, J Low de Vries, Ara Monadjem, Wanda Markotter","doi":"10.1093/jmammal/gyae036","DOIUrl":"https://doi.org/10.1093/jmammal/gyae036","url":null,"abstract":"Home range is an ecological concept that affects many aspects of the life of vertebrates and hence understanding how it varies between species is crucial. Mammalian home range size has been linked to body size and diet, but these studies were based predominantly on terrestrial species and most specifically excluded bats. As the only group of flying mammals, bats experience distinctly different constraints on movement, and hence home range. However, despite their diversity, relatively little is known about the home ranges of bats, and this is the first global review assessing correlates of their home range size. Our hypothesis is that home range will be impacted by different ecological conditions experienced by the bats and by the biological traits of the bats themselves. We performed a meta-analysis based on published data for 81 bat species to identify variables that contribute most to home range size. Sex, wing loading, functional group, colony size, dietary class, distance from the equator (latitudinal region), habitat type, and the interaction between habitat type and latitudinal region were all important explanatory variables. Wing loading was positively correlated with home range size—while females, open-air foragers, large colony sizes, and bats in temperate regions consistently had large home ranges. Understanding the correlates of home range has important implications, for example, for bat conservation and for assessing the risk of spillover of zoonotic pathogens from bats to humans and livestock.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"13 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140883946","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cintya A Segura-Trujillo, Luis Ignacio Iñiguez-Dávalos, Sergio Ticul Álvarez-Castañeda, Susette Castañeda-Rico, Jesús E Maldonado
Arthropod–bat interactions are often considered as a base model for studying factors underlying predator–prey coevolutionary processes. Bats developed ultrasonic echolocation to hunt, and in response some arthropods developed defense mechanisms such as ultrasonic hearing, allowing them to elude bat predators. The present study analyzes the feeding patterns of bats, focusing on sonic-auditory sensory mechanisms in predator–prey interactions. Next-generation DNA sequence data from fecal samples were used to analyze the diet of 17 bat species from Mexico. Arthropod prey taxa were classified according to their auditory traits, and echolocation data were recompiled from literature review. We: (i) classified arthropod families according to their hearing ability; (ii) estimated arthropod taxon richness and proportion in the diet of each bat species; and (iii) used multidimensional scaling, principal component analysis, and regression to analyze prey consumption patterns in relation to their auditory traits and in relation to echolocation characteristics of bats. Finally, we analyzed the relationship between foraging time and auditory characteristics of prey. Families with hearing organs correspond to the orders Lepidoptera and Orthoptera. We registered 20 families of Lepidoptera and 5 of Orthoptera—7 and 3 with hearing organs, respectively. Of these orders, families lacking ears were recorded in the diet of a few bat species. Our results support the allotonic frequency hypothesis predicting a difference in emission frequency intervals between predator and prey. However, we found that the consumption of earless moths is less frequent and is related to diurnal and twilight activity—hence, their consumption is limited to bat species foraging early. Results indicate bats feed on arthropod prey successfully despite the ultrasonic hearing ability of the prey. These results may be due to counteradaptations that allow maintenance of an asymmetric “arms race” between bats and eared insects that favors the predator.
{"title":"Interaction of sound-audition traits between eared insects and arthropodophagous bats: using a DNA approach to assess diet","authors":"Cintya A Segura-Trujillo, Luis Ignacio Iñiguez-Dávalos, Sergio Ticul Álvarez-Castañeda, Susette Castañeda-Rico, Jesús E Maldonado","doi":"10.1093/jmammal/gyae037","DOIUrl":"https://doi.org/10.1093/jmammal/gyae037","url":null,"abstract":"Arthropod–bat interactions are often considered as a base model for studying factors underlying predator–prey coevolutionary processes. Bats developed ultrasonic echolocation to hunt, and in response some arthropods developed defense mechanisms such as ultrasonic hearing, allowing them to elude bat predators. The present study analyzes the feeding patterns of bats, focusing on sonic-auditory sensory mechanisms in predator–prey interactions. Next-generation DNA sequence data from fecal samples were used to analyze the diet of 17 bat species from Mexico. Arthropod prey taxa were classified according to their auditory traits, and echolocation data were recompiled from literature review. We: (i) classified arthropod families according to their hearing ability; (ii) estimated arthropod taxon richness and proportion in the diet of each bat species; and (iii) used multidimensional scaling, principal component analysis, and regression to analyze prey consumption patterns in relation to their auditory traits and in relation to echolocation characteristics of bats. Finally, we analyzed the relationship between foraging time and auditory characteristics of prey. Families with hearing organs correspond to the orders Lepidoptera and Orthoptera. We registered 20 families of Lepidoptera and 5 of Orthoptera—7 and 3 with hearing organs, respectively. Of these orders, families lacking ears were recorded in the diet of a few bat species. Our results support the allotonic frequency hypothesis predicting a difference in emission frequency intervals between predator and prey. However, we found that the consumption of earless moths is less frequent and is related to diurnal and twilight activity—hence, their consumption is limited to bat species foraging early. Results indicate bats feed on arthropod prey successfully despite the ultrasonic hearing ability of the prey. These results may be due to counteradaptations that allow maintenance of an asymmetric “arms race” between bats and eared insects that favors the predator.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"105 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140839859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Paulo Estefano D Bobrowiec, Valéria da Cunha Tavares
The life cycles of bats are constrained by availability of resources such as food and shelter. Disruptions limiting otherwise naturally regulated access to these resources ultimately affect the fitness of bat populations and may eventually lead to local extinctions. We sampled bats before and after an Amazonian mega-dam water filling and retrieved data on their reproductive phenology, testing if and how sex ratio, seasonal abundance, and reproductive patterns respond to impacts of the newly operating hydroelectric dam. We analyzed data from 3,298 bat captures of 49 species. Females outnumbered males, previously and after the dam implementation, and we observed seasonal variations in the abundance of bats, which was lower after the implementation of the dam for most species. All species had at least 1 reproductive peak of pregnancy and/or lactation beginning at a variable time across seasons. Most species and functional ensembles were reproductively bimodal, with exceptions being the polymodal Artibeus obscurus and unimodal Phylostomus elongatus. Operations of the hydroelectric dam affected the abundance of both sexes equally, and effects were stronger in the rainy season, altering the timing of reproduction for females, delaying and shortening pregnancy and lactation. These changes expressed in female reproductive activity may be related to the shortfall of resources because of loss of irreplaceable vegetation caused by the dam filling. As we cannot predict the roles of variation of reproductive patterns observed after the filling in the long run we reinforce the importance of long-term, continuous monitoring and management to safeguard the reestablishment of reproductive patterns of females in order to repopulate and keep bat populations healthy in remaining areas along following dam construction.
{"title":"Hydroelectric dam impacts shorten and delay the reproductive periods of female leaf-nosed bats in Western Amazonia","authors":"Paulo Estefano D Bobrowiec, Valéria da Cunha Tavares","doi":"10.1093/jmammal/gyae043","DOIUrl":"https://doi.org/10.1093/jmammal/gyae043","url":null,"abstract":"The life cycles of bats are constrained by availability of resources such as food and shelter. Disruptions limiting otherwise naturally regulated access to these resources ultimately affect the fitness of bat populations and may eventually lead to local extinctions. We sampled bats before and after an Amazonian mega-dam water filling and retrieved data on their reproductive phenology, testing if and how sex ratio, seasonal abundance, and reproductive patterns respond to impacts of the newly operating hydroelectric dam. We analyzed data from 3,298 bat captures of 49 species. Females outnumbered males, previously and after the dam implementation, and we observed seasonal variations in the abundance of bats, which was lower after the implementation of the dam for most species. All species had at least 1 reproductive peak of pregnancy and/or lactation beginning at a variable time across seasons. Most species and functional ensembles were reproductively bimodal, with exceptions being the polymodal Artibeus obscurus and unimodal Phylostomus elongatus. Operations of the hydroelectric dam affected the abundance of both sexes equally, and effects were stronger in the rainy season, altering the timing of reproduction for females, delaying and shortening pregnancy and lactation. These changes expressed in female reproductive activity may be related to the shortfall of resources because of loss of irreplaceable vegetation caused by the dam filling. As we cannot predict the roles of variation of reproductive patterns observed after the filling in the long run we reinforce the importance of long-term, continuous monitoring and management to safeguard the reestablishment of reproductive patterns of females in order to repopulate and keep bat populations healthy in remaining areas along following dam construction.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"119 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140839941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Ramos-H., Ganesh Marín, Daniela Cafaggi, Cárol Sierra-Durán, Aarón Romero-Ruíz, Rodrigo A Medellín
Although Mexico holds the southernmost hibernating bats in North America, information on winter behavior and hibernacula microclimate use of temperate Mexican bats is limited. We studied hibernating bats at high altitudes (>1,000 m a.s.l.) in northern and central Mexico during 5 consecutive winters. Our aims were to document and describe the hibernacula, winter behavior (such as abundance and roost pattern), and microclimates (estimated as adjacent substrate temperature) of cave-hibernating bats in Mexico. We found 78 hibernacula and 6,089 torpid bats of 10 vespertilionid species, increasing by over 50% the number of cave-hibernating bat species and quadrupling the number of hibernacula for Mexico. Hibernacula were at altitudes between 1,049 and 3,633 m a.s.l., located in 3 mountain ranges, mainly in oak and conifer forests. Myotis velifer was the most common species, followed by Corynorhinus townsendii and C. mexicanus. We recorded the adjacent substrate temperatures from 9 species totaling 1,106 torpid bats and found differences in microclimate use among the 3 most common species. In general, abundance of torpid bats in our region of study was similar to those in the western United States, with aggregations of tens to a few hundred individuals per cave, and was lower than in the eastern United States where a cave may hold thousands of individuals. Knowledge of bat hibernation is crucial for developing conservation and management strategies on current conditions while accommodating environmental changes and other threats such as emerging diseases.
{"title":"Hibernacula of bats in Mexico, the southernmost records of hibernation in North America","authors":"Daniel Ramos-H., Ganesh Marín, Daniela Cafaggi, Cárol Sierra-Durán, Aarón Romero-Ruíz, Rodrigo A Medellín","doi":"10.1093/jmammal/gyae027","DOIUrl":"https://doi.org/10.1093/jmammal/gyae027","url":null,"abstract":"Although Mexico holds the southernmost hibernating bats in North America, information on winter behavior and hibernacula microclimate use of temperate Mexican bats is limited. We studied hibernating bats at high altitudes (>1,000 m a.s.l.) in northern and central Mexico during 5 consecutive winters. Our aims were to document and describe the hibernacula, winter behavior (such as abundance and roost pattern), and microclimates (estimated as adjacent substrate temperature) of cave-hibernating bats in Mexico. We found 78 hibernacula and 6,089 torpid bats of 10 vespertilionid species, increasing by over 50% the number of cave-hibernating bat species and quadrupling the number of hibernacula for Mexico. Hibernacula were at altitudes between 1,049 and 3,633 m a.s.l., located in 3 mountain ranges, mainly in oak and conifer forests. Myotis velifer was the most common species, followed by Corynorhinus townsendii and C. mexicanus. We recorded the adjacent substrate temperatures from 9 species totaling 1,106 torpid bats and found differences in microclimate use among the 3 most common species. In general, abundance of torpid bats in our region of study was similar to those in the western United States, with aggregations of tens to a few hundred individuals per cave, and was lower than in the eastern United States where a cave may hold thousands of individuals. Knowledge of bat hibernation is crucial for developing conservation and management strategies on current conditions while accommodating environmental changes and other threats such as emerging diseases.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"28 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140839934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Baltazar González, Natalia Ferro-Muñoz, Cristian Calvache-Sánchez, Danny Rojas, Gabriel M Martin
The genus Caenolestes is the most species-rich of the marsupial order Paucituberculata. Two species inhabit Colombia (and also occur in Ecuador) with a discontinuous distribution that has not been accounted for in previous studies—Caenolestes fuliginosus known from the Central and Eastern Andes, and C. convelatus restricted to the Western Andes. Here, we present new and noteworthy records of Caenolestes from the Western Andes at the distributional gap of C. convelatus, and outside the known range of C. fuliginosus. We present detailed comparisons using discrete and continuous diagnostic morphological characters, with type material and additional specimens collected nearby, to assess the identity of the new specimens. We performed statistical analyses at species and subspecies levels, and used a principal components analysis to explore the ordination of the new specimens in morphological space. We found that although these specimens are from the Western Andes, they present traits similar to C. fuliginosus and show great overlap with the morphospace of that species. The new records did not differ statistically with C. fuliginosus or any of its subspecies, but they differed in 20 craniodental measurements from C. convelatus. We also report differences at subspecies level within and between species. Based on these observations, we identified these records as C. fuliginosus, expanding its known distribution to the midportion of the Western Andes, across de Cauca valley. We discuss the biogeography of these 2 species in light of the new data and the context of high Andean habitats, especially regarding the contrasting biogeographical patterns found in other taxa in the Northern Andes. Finally, we discuss the need for a new and exhaustive review of the systematics and biogeography of the genus.
Caenolestes属是有袋目中物种最丰富的。有两个物种栖息在哥伦比亚（厄瓜多尔也有分布），它们的分布不连续，以前的研究没有考虑到这一点--Caenolestes fuliginosus产于安第斯山脉中部和东部，C. convelatus仅限于安第斯山脉西部。在这里，我们展示了来自西安第斯山脉的新的值得注意的 Caenolestes 记录，这些记录位于 C. convelatus 的分布间隙，并且在 C. fuliginosus 的已知分布范围之外。我们利用离散和连续的形态学诊断特征，与模式材料和在附近采集的其他标本进行了详细比较，以评估新标本的身份。我们在种和亚种水平上进行了统计分析，并使用主成分分析来探讨新标本在形态空间中的排序。我们发现，虽然这些标本来自西安第斯山脉，但它们的特征与 C. fuliginosus 相似，并与该物种的形态空间有很大重叠。在统计上，这些新记录与富里基诺索斯或其任何亚种都没有差异，但它们在 20 项颅齿测量上与康维拉图斯存在差异。我们还报告了种内和种间亚种水平的差异。基于这些观察结果，我们将这些记录确定为 C. fuliginosus，从而将其已知分布范围扩大到西安第斯山脉中段，横跨考卡山谷。我们根据新的数据和安第斯高纬度栖息地的背景，讨论了这两个物种的生物地理学，特别是关于在北安第斯山脉的其他分类群中发现的截然不同的生物地理学模式。最后，我们讨论了对该属的系统学和生物地理学进行新的、详尽回顾的必要性。
{"title":"Mind the gap: new records of Caenolestes in the Western Andes of Colombia challenge its current biogeographic patterns","authors":"Baltazar González, Natalia Ferro-Muñoz, Cristian Calvache-Sánchez, Danny Rojas, Gabriel M Martin","doi":"10.1093/jmammal/gyae035","DOIUrl":"https://doi.org/10.1093/jmammal/gyae035","url":null,"abstract":"The genus Caenolestes is the most species-rich of the marsupial order Paucituberculata. Two species inhabit Colombia (and also occur in Ecuador) with a discontinuous distribution that has not been accounted for in previous studies—Caenolestes fuliginosus known from the Central and Eastern Andes, and C. convelatus restricted to the Western Andes. Here, we present new and noteworthy records of Caenolestes from the Western Andes at the distributional gap of C. convelatus, and outside the known range of C. fuliginosus. We present detailed comparisons using discrete and continuous diagnostic morphological characters, with type material and additional specimens collected nearby, to assess the identity of the new specimens. We performed statistical analyses at species and subspecies levels, and used a principal components analysis to explore the ordination of the new specimens in morphological space. We found that although these specimens are from the Western Andes, they present traits similar to C. fuliginosus and show great overlap with the morphospace of that species. The new records did not differ statistically with C. fuliginosus or any of its subspecies, but they differed in 20 craniodental measurements from C. convelatus. We also report differences at subspecies level within and between species. Based on these observations, we identified these records as C. fuliginosus, expanding its known distribution to the midportion of the Western Andes, across de Cauca valley. We discuss the biogeography of these 2 species in light of the new data and the context of high Andean habitats, especially regarding the contrasting biogeographical patterns found in other taxa in the Northern Andes. Finally, we discuss the need for a new and exhaustive review of the systematics and biogeography of the genus.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"11 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140839860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
North American bat populations have experienced precipitous declines since the introduction of white-nose syndrome (WNS). Evidence that bats have responded to WNS by altering their winter habitat selection has been used to manipulate underground environments and improve winter survival. However, such management practices must be based on local data, which do not exist for all regions. Our goal was to identify determinants of winter habitat use for 3 bat species with varying susceptibility to WNS. To do so, we conducted 188 surveys of 129 potential hibernacula over 3 winters. We found that the range of winter temperatures and presence of water were important for the Little Brown Myotis (Myotis lucifugus) and Tricolored Bat (Perimyotis subflavus), species that are highly susceptible to WNS. Counts of both species were greater in sites with a narrow (<5 °C) temperature range and where streams or water bodies >25 m2 were present. In addition, we found larger groups of Little Brown Myotis in abandoned railroad tunnels than in caves. Winter counts of these species increased over time at 3 railroad tunnels that were surveyed for 3 consecutive winters, whereas populations were extirpated from historically important caves and mines. Counts of Big Brown Bats (Eptesicus fuscus), which are less susceptible to WNS, were also greater in hibernacula with water bodies. However, average winter temperature also helped predict counts of Big Brown Bats. This species had a curvilinear response to temperature, with most bats found at hibernacula with average winter temperatures of 4 to 6 °C, and fewer bats observed at warmer and colder conditions. These data show that focusing solely on historically important hibernacula may fail to achieve conservation goals for the Little Brown Myotis and Tricolored Bat in our region, and suggest that anthropogenic structures can provide habitat for remnant populations of imperiled bat species.
{"title":"Preference for hibernacula microclimates varies among 3 bat species susceptible to white-nose syndrome","authors":"Levi E Johnson, Joseph S Johnson","doi":"10.1093/jmammal/gyae039","DOIUrl":"https://doi.org/10.1093/jmammal/gyae039","url":null,"abstract":"North American bat populations have experienced precipitous declines since the introduction of white-nose syndrome (WNS). Evidence that bats have responded to WNS by altering their winter habitat selection has been used to manipulate underground environments and improve winter survival. However, such management practices must be based on local data, which do not exist for all regions. Our goal was to identify determinants of winter habitat use for 3 bat species with varying susceptibility to WNS. To do so, we conducted 188 surveys of 129 potential hibernacula over 3 winters. We found that the range of winter temperatures and presence of water were important for the Little Brown Myotis (Myotis lucifugus) and Tricolored Bat (Perimyotis subflavus), species that are highly susceptible to WNS. Counts of both species were greater in sites with a narrow (&lt;5 °C) temperature range and where streams or water bodies &gt;25 m2 were present. In addition, we found larger groups of Little Brown Myotis in abandoned railroad tunnels than in caves. Winter counts of these species increased over time at 3 railroad tunnels that were surveyed for 3 consecutive winters, whereas populations were extirpated from historically important caves and mines. Counts of Big Brown Bats (Eptesicus fuscus), which are less susceptible to WNS, were also greater in hibernacula with water bodies. However, average winter temperature also helped predict counts of Big Brown Bats. This species had a curvilinear response to temperature, with most bats found at hibernacula with average winter temperatures of 4 to 6 °C, and fewer bats observed at warmer and colder conditions. These data show that focusing solely on historically important hibernacula may fail to achieve conservation goals for the Little Brown Myotis and Tricolored Bat in our region, and suggest that anthropogenic structures can provide habitat for remnant populations of imperiled bat species.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"11 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-05-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140840000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel E Sanchez, Austin L Dikeman, Jacque A Lyman, Jennifer Zahratka, Viacheslav Fofanov, Faith M Walker, Carol L Chambers
The New Mexico Jumping Mouse (Zapus luteus) is a federally endangered granivore active for only 3 to 5 months annually. Knowledge of diet can help guide habitat recovery and yet despite calls for restoration of its riparian habitat, the diet of Z. luteus remains largely unknown. To date, only 8 plant species have been described in the diet—whereas insectivory, mycophagy, and dietary shifts have only been hypothesized. In the late summer, Z. luteus rapidly accumulates fat for a 9-month hibernation and restoration may fail if seasonal variation in the diet is overlooked. We used DNA metabarcoding on fecal DNA (n = 165) to resolve dietary taxa within multiple trophic levels of the diet and investigate monthly patterns of consumption. Seldom studied in metabarcoding frameworks, we also investigated exogenous contamination in Sherman live-capture traps. Potential contamination among feces, pelage, and trap surfaces was detectable but low (median = 0% to 2%), with fecal communities distinct from exogenous sources. The diet of Z. luteus was varied and most frequently (frequency of occurrence) of graminoids, forbs, lepidopterans, dipterids, and false-truffles. For plant foods, dietary diversity increased throughout their season of activity, shifting from sedges and woody vegetation in the early season (June to July) to forbs and grasses in the late season (August to September). Insect consumption was consistently detected throughout the season, whereas mycophagy was more frequently detected in August, when hypogeous fungi are typically more abundant. The breadth of dietary taxa suggests plasticity in resource use, potentially accommodating diverse patterns of seed availability throughout their active period. Shifts in plant consumption may reflect a dietary adaptation to the phenological patterns of their plant communities, a synchrony that might benefit both pre- and post-hibernation survival. Our work substantially improves our understanding of the diet of Z. luteus (241 dietary taxa) and will be useful for guiding habitat recovery. It also offers scalable methods to further investigate the diet under disturbance contexts (e.g., grazing, wildfire, drought).
{"title":"Forbs, graminoids, and lepidopterans: breadth and seasonal variation in the diet of the New Mexico jumping mouse (Zapus luteus)","authors":"Daniel E Sanchez, Austin L Dikeman, Jacque A Lyman, Jennifer Zahratka, Viacheslav Fofanov, Faith M Walker, Carol L Chambers","doi":"10.1093/jmammal/gyae026","DOIUrl":"https://doi.org/10.1093/jmammal/gyae026","url":null,"abstract":"The New Mexico Jumping Mouse (Zapus luteus) is a federally endangered granivore active for only 3 to 5 months annually. Knowledge of diet can help guide habitat recovery and yet despite calls for restoration of its riparian habitat, the diet of Z. luteus remains largely unknown. To date, only 8 plant species have been described in the diet—whereas insectivory, mycophagy, and dietary shifts have only been hypothesized. In the late summer, Z. luteus rapidly accumulates fat for a 9-month hibernation and restoration may fail if seasonal variation in the diet is overlooked. We used DNA metabarcoding on fecal DNA (n = 165) to resolve dietary taxa within multiple trophic levels of the diet and investigate monthly patterns of consumption. Seldom studied in metabarcoding frameworks, we also investigated exogenous contamination in Sherman live-capture traps. Potential contamination among feces, pelage, and trap surfaces was detectable but low (median = 0% to 2%), with fecal communities distinct from exogenous sources. The diet of Z. luteus was varied and most frequently (frequency of occurrence) of graminoids, forbs, lepidopterans, dipterids, and false-truffles. For plant foods, dietary diversity increased throughout their season of activity, shifting from sedges and woody vegetation in the early season (June to July) to forbs and grasses in the late season (August to September). Insect consumption was consistently detected throughout the season, whereas mycophagy was more frequently detected in August, when hypogeous fungi are typically more abundant. The breadth of dietary taxa suggests plasticity in resource use, potentially accommodating diverse patterns of seed availability throughout their active period. Shifts in plant consumption may reflect a dietary adaptation to the phenological patterns of their plant communities, a synchrony that might benefit both pre- and post-hibernation survival. Our work substantially improves our understanding of the diet of Z. luteus (241 dietary taxa) and will be useful for guiding habitat recovery. It also offers scalable methods to further investigate the diet under disturbance contexts (e.g., grazing, wildfire, drought).","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"119 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140624839","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Habitat specialists have been largely overlooked in old-growth pinyon–juniper woodlands, despite specialists exhibiting heightened sensitivity to anthropogenic habitat loss. Furthermore, small mammal relationships within pinyon–juniper woodlands have most commonly been investigated via species abundance or habitat use, rather than habitat selection, thereby providing limited management metrics. We used the Oscura Mountains Colorado Chipmunk (Neotamias quadrivittatus oscuraensis) as a model organism to evaluate whether old-growth conditions drive resource selection by small mammals associated with pinyon–juniper woodlands. The goal of our study was to determine resources important to the chipmunk to inform management decisions. We evaluated microhabitat selection by testing a priori predictions based on natural history characteristics of the chipmunk and the woodlands. We grouped predictions into habitat characteristics affiliated with or not affiliated with old growth. We tested predictions under a multistage modeling framework using generalized linear mixed models with a binomial response variable of use versus availability. Probability of selection by chipmunks increased with increasing mean juniper diameter and increasing variation of pinyon diameter and decreased with increased distance to rocky escape terrain and increased mean percent grass cover. Our findings support the classification of the Oscura Mountains Colorado chipmunk as an old-growth pinyon–juniper specialist, as the chipmunk displayed disproportionate preference for old-growth microhabitat conditions. We recommend management policies that conserve old-growth multiage stands of pinyons and junipers. Old-growth conditions near outcroppings, escarpments, and large boulders are of particular conservation concern. Further, thinning resulting in increased grass cover may be detrimental to this old-growth pinyon–juniper specialist.
{"title":"Microhabitat selection by the Oscura Mountains Colorado Chipmunk (Neotamias quadrivittatus oscuraensis): an old-growth pinyon–juniper woodland specialist","authors":"Clare N O’Connell, Jennifer K Frey","doi":"10.1093/jmammal/gyae029","DOIUrl":"https://doi.org/10.1093/jmammal/gyae029","url":null,"abstract":"Habitat specialists have been largely overlooked in old-growth pinyon–juniper woodlands, despite specialists exhibiting heightened sensitivity to anthropogenic habitat loss. Furthermore, small mammal relationships within pinyon–juniper woodlands have most commonly been investigated via species abundance or habitat use, rather than habitat selection, thereby providing limited management metrics. We used the Oscura Mountains Colorado Chipmunk (Neotamias quadrivittatus oscuraensis) as a model organism to evaluate whether old-growth conditions drive resource selection by small mammals associated with pinyon–juniper woodlands. The goal of our study was to determine resources important to the chipmunk to inform management decisions. We evaluated microhabitat selection by testing a priori predictions based on natural history characteristics of the chipmunk and the woodlands. We grouped predictions into habitat characteristics affiliated with or not affiliated with old growth. We tested predictions under a multistage modeling framework using generalized linear mixed models with a binomial response variable of use versus availability. Probability of selection by chipmunks increased with increasing mean juniper diameter and increasing variation of pinyon diameter and decreased with increased distance to rocky escape terrain and increased mean percent grass cover. Our findings support the classification of the Oscura Mountains Colorado chipmunk as an old-growth pinyon–juniper specialist, as the chipmunk displayed disproportionate preference for old-growth microhabitat conditions. We recommend management policies that conserve old-growth multiage stands of pinyons and junipers. Old-growth conditions near outcroppings, escarpments, and large boulders are of particular conservation concern. Further, thinning resulting in increased grass cover may be detrimental to this old-growth pinyon–juniper specialist.","PeriodicalId":50157,"journal":{"name":"Journal of Mammalogy","volume":"1 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140630620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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