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Stochastically structured illumination microscopy scan less super resolution imaging 随机结构照明显微镜扫描少超分辨率成像
Pub Date : 2024-11-06 DOI: 10.1038/s44303-024-00047-x
Denzel Fusco, Emmanouil Xypakis, Ylenia Gigante, Lorenza Mautone, Silvia Di Angelantonio, Giorgia Ponsi, Giancarlo Ruocco, Marco Leonetti
In super-resolution, a varying illumination image stack is required. This enriched dataset typically necessitates precise mechanical control and micron-scale optical alignment and repeatability. Here, we introduce a novel methodology for super-resolution microscopy called stochastically structured illumination microscopy (S2IM), which bypasses the need for illumination control exploiting instead the random, uncontrolled movement of the target object. We tested our methodology within the clinically relevant ophthalmoscopic setting, harnessing the inherent saccadic motion of the eye to induce stochastic displacement of the illumination pattern on the retina. We opted to avoid human subjects by utilizing a phantom eye model featuring a retina composed of human induced pluripotent stem cells (iPSC) retinal neurons and replicating the ocular saccadic movements by custom actuators. Our findings demonstrate that S2IM unlocks scan-less super-resolution with a resolution enhancement of 1.91, with promising prospects also beyond ophthalmoscopy applications such as active matter or atmospheric/astronomical observation.
在超分辨率中,需要不同光照度的图像堆栈。这种丰富的数据集通常需要精确的机械控制以及微米级的光学对准和可重复性。在这里,我们介绍了一种用于超分辨显微镜的新方法,称为随机结构照明显微镜(S2IM),它不需要照明控制,而是利用目标物体的随机、不受控制的运动。我们在与临床相关的眼科环境中测试了我们的方法,利用眼睛固有的回旋运动来诱导视网膜上照明模式的随机位移。我们选择避开人类受试者,利用由人类诱导多能干细胞(iPSC)视网膜神经元组成的视网膜模型,并通过定制致动器复制眼球的囊状运动。我们的研究结果表明,S2IM 可实现无扫描超分辨率,分辨率提高了 1.91 倍,其应用前景远远超出了眼底镜的范围,例如活性物质或大气/天文观测。
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引用次数: 0
Impact of photobleaching on quantitative, spatio-temporal, super-resolution imaging of mitochondria in live C. elegans larvae 光漂白对线粒体定量、时空、超分辨率活体线粒体成像的影响
Pub Date : 2024-11-06 DOI: 10.1038/s44303-024-00043-1
Segos Ioannis, Van Eeckhoven Jens, Greig Alan, Redd Michael, Thrasivoulou Christopher, Conradt Barbara
Super-resolution (SR) 3D rendering allows superior quantitative analysis of intracellular structures but has largely been limited to fixed or ex vivo samples. Here we developed a method to perform SR live imaging of mitochondria during post-embryonic development of C. elegans larvae. Our workflow includes the drug-free mechanical immobilisation of animals using polystyrene nanobeads, which has previously not been used for in vivo SR imaging. Based on the alignment of moving objects and global threshold-based image segmentation, our method enables an efficient 3D reconstruction of individual mitochondria. We demonstrate for the first time that the frequency distribution of fluorescence intensities is not affected by photobleaching, and that global thresholding alone enables the quantitative comparison of mitochondria along timeseries. Our composite approach significantly improves the study of biological structures and processes in SR during C. elegans post-embryonic development. Furthermore, the discovery that image segmentation does not require any prior correction against photobleaching, a fundamental problem in fluorescence microscopy, will impact experimental strategies aimed at quantitatively studying the dynamics of organelles and other intracellular compartments in any biological system.
超分辨率(SR)三维渲染技术可对细胞内结构进行出色的定量分析,但该技术在很大程度上仅限于固定或体外样本。在此,我们开发了一种方法,对线粒体在优雅类幼虫胚后发育过程中进行 SR 实时成像。我们的工作流程包括使用聚苯乙烯纳米吸附剂对动物进行无药物机械固定,这种方法以前从未用于体内 SR 成像。基于移动物体的对齐和基于全局阈值的图像分割,我们的方法实现了单个线粒体的高效三维重建。我们首次证明,荧光强度的频率分布不受光漂白的影响,而且仅靠全局阈值就能定量比较线粒体的时间序列。我们的复合方法大大改进了对线粒体在胚后发育过程中的生物结构和过程的研究。此外,图像分割不需要事先对荧光显微镜中的一个基本问题--光漂白进行任何校正,这一发现将对定量研究任何生物系统中细胞器和其他细胞内区室动态的实验策略产生影响。
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引用次数: 0
Impact of dietary zinc on stimulated zinc secretion MRI in the healthy and malignant mouse prostate 膳食锌对健康和恶性小鼠前列腺锌分泌磁共振成像的影响
Pub Date : 2024-11-06 DOI: 10.1038/s44303-024-00051-1
Veronica Clavijo Jordan, André F. Martins, Erica Dao, Kalotina Geraki, Sara Chirayil, Xiaodong Wen, Pooyan Khalighinejad, Daniel Parrott, Xiaojing Wang, Patricia Gonzalez Pagan, Neil Rofsky, Michael Farquharson, A. Dean Sherry
Previous studies have shown that the zinc-responsive MRI probe, GdL1, can distinguish healthy versus malignant prostate tissues based upon differences in zinc content and secretion. In this study, mice were fed chow containing low, normal, or high zinc content for 3 weeks before imaging glucose stimulated zinc secretion (GSZS) by MRI. The distribution of zinc in prostate tissue in these three groups was imaged by synchrotron radiation X-ray fluorescence (SR-XRF). A zinc deficiency caused systemic and organ-level dysregulation, weight loss, and altered zinc bioavailability. Zinc efflux from the prostate increased in parallel to dietary zinc in healthy mice but not in TRAMP mice, consistent with a lowered capacity to store dietary zinc in malignant cells. This differential zinc efflux suggests that a dietary supplement of zinc prior to a GSZS study may enhance image contrast between healthy and malignant prostate tissue, thereby improving the accuracy of prostate cancer detection in man.
先前的研究表明,锌响应核磁共振成像探针 GdL1 可根据锌含量和分泌量的差异区分健康和恶性前列腺组织。在这项研究中,小鼠被喂食含锌量低、正常或高的饲料 3 周,然后通过磁共振成像检测葡萄糖刺激锌分泌(GSZS)。同步辐射 X 射线荧光 (SR-XRF) 对这三组小鼠前列腺组织中锌的分布情况进行了成像。缺锌会导致全身和器官功能失调、体重减轻和锌生物利用度改变。健康小鼠前列腺的锌外流与膳食锌的外流同步增加,而TRAMP小鼠则不然,这与恶性细胞储存膳食锌的能力降低是一致的。这种锌外流的差异表明,在进行 GSZS 研究之前通过饮食补充锌可能会增强健康和恶性前列腺组织之间的图像对比度,从而提高人类前列腺癌检测的准确性。
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引用次数: 0
Deep tissue photoacoustic imaging with light and sound 用光和声音进行深层组织光声成像
Pub Date : 2024-11-06 DOI: 10.1038/s44303-024-00048-w
Luca Menozzi, Junjie Yao
Photoacoustic computed tomography (PACT) can harvest diffusive photons to image the optical absorption contrast of molecules in a scattering medium, with ultrasonically-defined spatial resolution. PACT has been extensively used in preclinical research for imaging functional and molecular information in various animal models, with recent clinical translations. In this review, we aim to highlight the recent technical breakthroughs in PACT and the emerging preclinical and clinical applications in deep tissue imaging.
光声计算机断层扫描(PACT)可利用扩散光子对散射介质中分子的光学吸收对比度进行成像,并具有超声波定义的空间分辨率。PACT 已广泛应用于临床前研究,对各种动物模型的功能和分子信息进行成像,最近还被应用于临床。在这篇综述中,我们将重点介绍 PACT 的最新技术突破以及在深部组织成像中的新兴临床前和临床应用。
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引用次数: 0
Publisher Correction: Magnetic resonance reveals early lipid deposition in murine prediabetes as predictive marker for cardiovascular injury 出版商更正:磁共振发现小鼠糖尿病前期的早期脂质沉积是心血管损伤的预测标志物
Pub Date : 2024-10-11 DOI: 10.1038/s44303-024-00050-2
Katja Heller, Vera Flocke, Tamara Straub, Zhaoping Ding, Tanu Srivastava, Melissa Nowak, Florian Funk, Bodo Levkau, Joachim Schmitt, Maria Grandoch, Ulrich Flögel
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引用次数: 0
Label-free live cell recognition and tracking for biological discoveries and translational applications 用于生物发现和转化应用的无标签活细胞识别与追踪技术
Pub Date : 2024-10-07 DOI: 10.1038/s44303-024-00046-y
Biqi Chen, Zi Yin, Billy Wai-Lung Ng, Dan Michelle Wang, Rocky S. Tuan, Ryoma Bise, Dai Fei Elmer Ker
Label-free, live cell recognition (i.e. instance segmentation) and tracking using computer vision-aided recognition can be a powerful tool that rapidly generates multi-modal readouts of cell populations at single cell resolution. However, this technology remains hindered by the lack of accurate, universal algorithms. This review presents related biological and computer vision concepts to bridge these disciplines, paving the way for broad applications in cell-based diagnostics, drug discovery, and biomanufacturing.
利用计算机视觉辅助识别技术进行无标签活细胞识别(即实例分割)和跟踪是一种强大的工具,可快速生成单细胞分辨率的细胞群多模式读数。然而,由于缺乏准确、通用的算法,这项技术仍然受到阻碍。本综述介绍了相关的生物学和计算机视觉概念,为这些学科架起了桥梁,为细胞诊断、药物发现和生物制造领域的广泛应用铺平了道路。
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引用次数: 0
Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS) 利用多摄像头阵列扫描仪(MCAS)进行细胞分辨率的快速三维成像,用于数字细胞病理学研究
Pub Date : 2024-10-01 DOI: 10.1038/s44303-024-00042-2
Kanghyun Kim, Amey Chaware, Clare B. Cook, Shiqi Xu, Monica Abdelmalak, Colin Cooke, Kevin C. Zhou, Mark Harfouche, Paul Reamey, Veton Saliu, Jed Doman, Clay Dugo, Gregor Horstmeyer, Richard Davis, Ian Taylor-Cho, Wen-Chi Foo, Lucas Kreiss, Xiaoyin Sara Jiang, Roarke Horstmeyer
Optical microscopy has long been the standard method for diagnosis in cytopathology. Whole slide scanners can image and digitize large sample areas automatically, but are slow, expensive and therefore not widely available. Clinical diagnosis of cytology specimens is especially challenging since these samples are both spread over large areas and thick, which requires 3D capture. Here, we introduce a new parallelized microscope for scanning thick specimens across extremely wide fields-of-view (54 × 72 mm2) at 1.2 and 0.6 μm resolutions, accompanied by machine learning software to rapidly assess these 16 gigapixel scans. This Multi-Camera Array Scanner (MCAS) comprises 48 micro-cameras closely arranged to simultaneously image different areas. By capturing 624 megapixels per snapshot, the MCAS is significantly faster than most conventional whole-slide scanners. We used this system to digitize entire cytology samples (scanning three entire slides in 3D in just several minutes) and demonstrate two machine learning techniques to assist pathologists: first, an adenocarcinoma detection model in lung specimens (0.73 recall); second, a slide-level classification model of lung smears (0.969 AUC).
长期以来,光学显微镜一直是细胞病理学诊断的标准方法。整张玻片扫描仪可以自动对大面积样本进行成像和数字化,但速度慢、价格昂贵,因此并不普及。细胞学样本的临床诊断尤其具有挑战性,因为这些样本既分布在大面积区域,又很厚,需要三维捕捉。在此,我们介绍一种新型并行显微镜,它能以 1.2 和 0.6 μm 的分辨率在极宽的视场(54 × 72 mm2)内扫描厚标本,并配有机器学习软件来快速评估这些 1600 万像素的扫描结果。这种多摄像头阵列扫描仪(MCAS)由 48 个微型摄像头组成,它们紧密排列,可同时对不同区域进行成像。MCAS 每张快照可捕捉 624 万像素,速度明显快于大多数传统的整张幻灯片扫描仪。我们使用该系统对整个细胞学样本进行了数字化处理(仅用几分钟就以三维方式扫描了整整三张玻片),并展示了两种辅助病理学家的机器学习技术:第一种是肺部标本中的腺癌检测模型(召回率为 0.73);第二种是肺部涂片的玻片级分类模型(AUC 为 0.969)。
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引用次数: 0
Author Correction: [18F]FSPG-PET provides an early marker of radiotherapy response in head and neck squamous cell cancer 作者更正:[18F]FSPG-PET是头颈部鳞状细胞癌放疗反应的早期标志物
Pub Date : 2024-10-01 DOI: 10.1038/s44303-024-00049-9
Khrishanthne Sambasivan, Will E. Tyrrell, Rizwan Farooq, Jenasee Mynerich, Richard S. Edwards, Muhammet Tanc, Teresa Guerrero Urbano, Timothy H. Witney
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引用次数: 0
KMnO4/Pb staining allows uranium free imaging of tissue architectures in low vacuum scanning electron microscopy KMnO4/Pb 染色技术可在低真空扫描电子显微镜下对组织结构进行无铀成像
Pub Date : 2024-10-01 DOI: 10.1038/s44303-024-00045-z
Akira Sawaguchi, Takeshi Kamimura, Kyoko Kitagawa, Yoko Nagashima, Nobuyasu Takahashi
Scanning electron microscopy under low-vacuum conditions allows high-resolution imaging of complex cell/tissue architectures in nonconductive specimens. However, the conventional methods for metal staining of biological specimens require harmful uranium compounds, which hampers the applications of electron microscopy. Here, we introduce a uranium-free KMnO4/Pb metal staining protocol that allows multiscale imaging of extensive cell/tissue architectures to intensive subcellular ultrastructures. The obtained image contrast was equivalent to that of Ur/Pb staining and sufficient for ultrastructural observation, showing the fine processes of podocytes in the glomerulus, which were invisible by light microscopy. The stainability in the elastic tissue indicated that the distinct histochemical properties of KMnO4 oxidation led to Pb deposition and BSE signal enhancement superior to Ur staining. Elemental analysis clarified that the determinant of the backscattered electron signal intensity was the amount of Pb deposition enhanced by KMnO4 oxidation. This user-friendly method is anticipated to create a new approach for biomedical electron microscopy.
低真空条件下的扫描电子显微镜可以对不导电标本中复杂的细胞/组织结构进行高分辨率成像。然而,传统的生物标本金属染色方法需要使用有害的铀化合物,这阻碍了电子显微镜的应用。在这里,我们介绍了一种无铀的 KMnO4/Pb 金属染色方案,可对广泛的细胞/组织结构到密集的亚细胞超微结构进行多尺度成像。获得的图像对比度与铀/铅染色相当,足以进行超微结构观察,显示出肾小球中荚膜细胞的精细过程,而光镜下是看不到的。弹性组织中的染色性表明,KMnO4 氧化的独特组织化学特性导致了铅沉积和 BSE 信号增强,其效果优于 Ur 染色。元素分析表明,决定反向散射电子信号强度的因素是 KMnO4 氧化所增强的铅沉积量。这种用户友好型方法有望为生物医学电子显微镜开创一种新方法。
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引用次数: 0
Rapid full-color serial sectioning tomography with speckle illumination and ultraviolet excitation 利用斑点照明和紫外线激发进行快速全彩序列切片断层扫描
Pub Date : 2024-09-30 DOI: 10.1038/s44303-024-00040-4
Wentao Yu, Yan Zhang, Claudia T. K. Lo, Lei Kang, Terence T. W. Wong
Three-dimensional (3D) high-resolution large-volume imaging has remained a challenge. Translational rapid ultraviolet-excited sectioning tomography (TRUST) achieves rapid and cost-effective whole-organ subcellular imaging through iterative optical scanning and mechanical sectioning. However, the axial resolution is limited by the mechanical sectioning thickness or the UV light penetration depth in tissue. Here, assisted with high-and-low-frequency (HiLo) microscopy (HiLoTRUST), the optical sectioning thickness has been reduced from tens of micrometers to ~5.8 µm. In addition, HiLoTRUST has attained a finer mechanical sectioning thickness (10–15 µm) compared to TRUST (50 µm). For high-content imaging as in TRUST, we employed two additional UV light-emitting diodes (LEDs) specifically for uniform illumination. The full-color imaging ability and improved axial resolution of HiLoTRUST have been validated by two-dimensional (2D)/3D imaging of various mouse organs and human lung cancer specimens. HiLoTRUST offers a cost-effective, full-color, and high-resolution 3D imaging approach, showing its great potential in 3D histology applications.
三维(3D)高分辨率大容量成像一直是一项挑战。转化快速紫外线激发切片断层成像技术(TRUST)通过迭代光学扫描和机械切片实现了快速、经济的全器官亚细胞成像。然而,轴向分辨率受到机械切片厚度或组织中紫外光穿透深度的限制。在这里,在高低频(HiLo)显微镜(HiLoTRUST)的辅助下,光学切片厚度从几十微米减少到 ~5.8 µm。此外,与 TRUST(50 微米)相比,HiLoTRUST 实现了更精细的机械切片厚度(10-15 微米)。与 TRUST 一样,为了实现高内容成像,我们采用了两个额外的紫外发光二极管 (LED),专门用于均匀照明。各种小鼠器官和人类肺癌标本的二维(2D)/三维成像验证了 HiLoTRUST 的全彩成像能力和更高的轴向分辨率。HiLoTRUST 提供了一种具有成本效益、全彩和高分辨率的三维成像方法,显示了其在三维组织学应用中的巨大潜力。
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引用次数: 0
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npj Imaging
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