Tao Yu, Huanan Zhou, Z. Liu, H. Zhai, Qingchang Liu
Chilling is an important abiotic stress in plants. Sweet potato is sensitive to cold damage due to its tropical origin. In this study, we identified a basic helix-loop-helix (bHLH) gene, IbbHLH33, from our cold-tolerance-related transcriptomic data. Further analyses revealed that IbbHLH33 encoded a nuclear protein and was most closely related to AtbHLH33. RT-qPCR analysis showed that IbbHLH33 was expressed at the highest level in the roots, and its expression was strongly induced by low temperature (4 °C), H2O2 and abscisic acid (ABA) treatments. Transgenic tobacco plants overexpressing IbbHLH33 were obtained by Agrobacterium-mediated transformation, which enhanced the chilling resistance of tobacco. At low temperatures, the proline content, superoxide dismutase (SOD) activity and malondialdehyde (MDA) content increased significantly, while the relative conductivity decreased significantly. At the same time, the expression of proline synthesis related genes and antioxidant activity related genes increased, while the expression of ABA synthesis related genes decreased. The results showed that IbbHLH33 is a transcription factor encoding a gene of the bHLH family that regulates chilling tolerance. In conclusion, these data suggest that IbbHLH33 has the potential to improve chilling tolerance in tobacco and other plants.
{"title":"The sweet potato transcription factor IbbHLH33 enhances chilling tolerance in transgenic tobacco","authors":"Tao Yu, Huanan Zhou, Z. Liu, H. Zhai, Qingchang Liu","doi":"10.17221/115/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/115/2021-cjgpb","url":null,"abstract":"Chilling is an important abiotic stress in plants. Sweet potato is sensitive to cold damage due to its tropical origin. In this study, we identified a basic helix-loop-helix (bHLH) gene, IbbHLH33, from our cold-tolerance-related transcriptomic data. Further analyses revealed that IbbHLH33 encoded a nuclear protein and was most closely related to AtbHLH33. RT-qPCR analysis showed that IbbHLH33 was expressed at the highest level in the roots, and its expression was strongly induced by low temperature (4 °C), H2O2 and abscisic acid (ABA) treatments. Transgenic tobacco plants overexpressing IbbHLH33 were obtained by Agrobacterium-mediated transformation, which enhanced the chilling resistance of tobacco. At low temperatures, the proline content, superoxide dismutase (SOD) activity and malondialdehyde (MDA) content increased significantly, while the relative conductivity decreased significantly. At the same time, the expression of proline synthesis related genes and antioxidant activity related genes increased, while the expression of ABA synthesis related genes decreased. The results showed that IbbHLH33 is a transcription factor encoding a gene of the bHLH family that regulates chilling tolerance. In conclusion, these data suggest that IbbHLH33 has the potential to improve chilling tolerance in tobacco and other plants.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43643196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gregor Mendel laid foundations of genetics after his experiments in pea plant hybridization. The choice of pea (Pisum sativum L.) and its seven morphological characters as a model system was fortuitous and enabled the fundamental discoveries. Nevertheless, other model organisms were chosen by his followers who aimed at discovering the nature of hereditary information. This remained so until the era of molecular biology and genomics, largely due to the huge size of the pea plant genome. However, the introduction of methods for dissecting the genome to single chromosomes by flow cytometric sorting simplified physical mapping and sequencing the pea genome and the analysis of its evolution. An unexplored potential of chromosome flow sorting in pea includes gene cloning and also the analysis of the molecular organization of condensed mitotic chromosomes. In line with the advances in various omics techniques and a variety of physiological and morphological characters, this makes the pea plant an attractive candidate for a new plant model.
{"title":"Chromosome-centric approaches in crop genomics: Focus on Mendel’s pea plant","authors":"Petr Cápal, J. Doležel","doi":"10.17221/11/2022-cjgpb","DOIUrl":"https://doi.org/10.17221/11/2022-cjgpb","url":null,"abstract":"Gregor Mendel laid foundations of genetics after his experiments in pea plant hybridization. The choice of pea (Pisum sativum L.) and its seven morphological characters as a model system was fortuitous and enabled the fundamental discoveries. Nevertheless, other model organisms were chosen by his followers who aimed at discovering the nature of hereditary information. This remained so until the era of molecular biology and genomics, largely due to the huge size of the pea plant genome. However, the introduction of methods for dissecting the genome to single chromosomes by flow cytometric sorting simplified physical mapping and sequencing the pea genome and the analysis of its evolution. An unexplored potential of chromosome flow sorting in pea includes gene cloning and also the analysis of the molecular organization of condensed mitotic chromosomes. In line with the advances in various omics techniques and a variety of physiological and morphological characters, this makes the pea plant an attractive candidate for a new plant model.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46961580","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The wheat leaf rust resistance gene Lr1 encodes a typical coiled-coil nucleotide-binding site leucine-rich repeat (CC-NBS-LRR) of resistance protein containing 1 344 amino acids. WR003, a cleaved amplified polymorphic sequence (CAPS) marker is derived from the LRR regions of Lr1. In this study, a worldwide collection of 120 Aegilops tauschii accessions and 282 hexaploid wheat varieties was screened for Lr1 alleles using WR003, and the specificity of WR003 for Lr1 was confirmed by pathogenicity tests and genotype analysis. The sequence alignment and phylogenetic tree analysis of 38 Lr1 haplotypes provided a further view of the molecular evolution of Lr1. The results showed that there were very few polymorphisms between the Lr1 alleles from Ae. tauschii and hexaploid wheat with the same resistance phenotype. The polymorphisms of the Lr1 haplotypes were mainly between the different resistance lines, rather than between the different ploidy levels. These results indicate that Lr1 originated from Ae. tauschii and differentiated into resistant and susceptible genotypes before its introgression into hexaploid wheat. Therefore, it is likely that wheat Lr1 has at least two major variants for disease resistance and susceptibility, and except for certain point mutations, few gene conversions and genetic re-combinations occurred during the hexaploid wheat domestication.
{"title":"Validation of CAPS marker WR003 for the leaf rust resistance gene Lr1 and the molecular evolution of Lr1 in wheat","authors":"Xian-jun Liu, Xinchun Liu, Hongyan Sun, Chunyan Hao, Xiaoxiao Wang, Zhijiang Rong, Zongyun Feng","doi":"10.17221/119/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/119/2021-cjgpb","url":null,"abstract":"The wheat leaf rust resistance gene Lr1 encodes a typical coiled-coil nucleotide-binding site leucine-rich repeat (CC-NBS-LRR) of resistance protein containing 1 344 amino acids. WR003, a cleaved amplified polymorphic sequence (CAPS) marker is derived from the LRR regions of Lr1. In this study, a worldwide collection of 120 Aegilops tauschii accessions and 282 hexaploid wheat varieties was screened for Lr1 alleles using WR003, and the specificity of WR003 for Lr1 was confirmed by pathogenicity tests and genotype analysis. The sequence alignment and phylogenetic tree analysis of 38 Lr1 haplotypes provided a further view of the molecular evolution of Lr1. The results showed that there were very few polymorphisms between the Lr1 alleles from Ae. tauschii and hexaploid wheat with the same resistance phenotype. The polymorphisms of the Lr1 haplotypes were mainly between the different resistance lines, rather than between the different ploidy levels. These results indicate that Lr1 originated from Ae. tauschii and differentiated into resistant and susceptible genotypes before its introgression into hexaploid wheat. Therefore, it is likely that wheat Lr1 has at least two major variants for disease resistance and susceptibility, and except for certain point mutations, few gene conversions and genetic re-combinations occurred during the hexaploid wheat domestication.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47224683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The inheritance of anther orientation of 154 individuals from two B1 populations of Brassica rapa (syn. Brassica campestris) was evaluated under controlled conditions in a greenhouse. The anther orientation was evaluated visually at the time of fully open flowers. The observed extrorse:introrse ratios were 1 : 1 in R-o-18 × (R-o-18 × RM29) population and 3 : 1 in R-o-18 × (R-o-18 × R c-50) population. It was concluded that this trait is controlled by two duplicated pairs of genes (A1, A2) for extrorse anthers, either of which can produce extrorse anthers when a single dominant allele is present. Introrse anthers result when all alleles at both loci are recessive.
{"title":"Mendelian inheritance of introrse orientated anthers in Brassica rapa","authors":"J. Salava, D. Lydiate","doi":"10.17221/107/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/107/2021-cjgpb","url":null,"abstract":"The inheritance of anther orientation of 154 individuals from two B1 populations of Brassica rapa (syn. Brassica campestris) was evaluated under controlled conditions in a greenhouse. The anther orientation was evaluated visually at the time of fully open flowers. The observed extrorse:introrse ratios were 1 : 1 in R-o-18 × (R-o-18 × RM29) population and 3 : 1 in R-o-18 × (R-o-18 × R c-50) population. It was concluded that this trait is controlled by two duplicated pairs of genes (A1, A2) for extrorse anthers, either of which can produce extrorse anthers when a single dominant allele is present. Introrse anthers result when all alleles at both loci are recessive.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42472027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
G. Sülü, İ. Polat, H. Boyaci, A. Yildirim, E. Gümrükcü
Fusarium oxysporum Schlecht. f.sp. melongenae (FOM), Verticillium dahliae (Ve) and Ralstonia solanacearum are major limiting pathogens affecting eggplant cultivation and their yield in the world. Natural resistance genes are the most environmentally friendly method to control the disease. Thus, marker-assisted selection (MAS) is preferred as a tool for screening resistance genes (R-genes) in eggplant resistance breeding. In this study, markers that are specifically linked to major disease resistance genes conferring resistance to F. melongenae, V. dahliae and R. solanacearum were tested in a population containing breeding materials to validate the resistance. Resistant Solanum melongena accessions LS1934 and LS2436 and their reciprocal crosses were used as the resistance resource for this validation study. Moreover, classical resistance tests to FOM and Ve were performed with the root-dip inoculation method for classification of all the accessions based on their resistance/susceptibility responses. The SCAR426, CAPs_903 and SIVR844 markers were highly informative for the determination of resistance genes (Fomg, Ve and ERs1). Therefore, in areas with high susceptibility to diseases, a highly efficient combination of the relevant R-genes and their pyramiding into commercial eggplant varieties are proposed to be implemented as a pragmatic approach.
{"title":"Screening and validation of three molecular markers for disease resistance in eggplant","authors":"G. Sülü, İ. Polat, H. Boyaci, A. Yildirim, E. Gümrükcü","doi":"10.17221/105/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/105/2021-cjgpb","url":null,"abstract":"Fusarium oxysporum Schlecht. f.sp. melongenae (FOM), Verticillium dahliae (Ve) and Ralstonia solanacearum are major limiting pathogens affecting eggplant cultivation and their yield in the world. Natural resistance genes are the most environmentally friendly method to control the disease. Thus, marker-assisted selection (MAS) is preferred as a tool for screening resistance genes (R-genes) in eggplant resistance breeding. In this study, markers that are specifically linked to major disease resistance genes conferring resistance to F. melongenae, V. dahliae and R. solanacearum were tested in a population containing breeding materials to validate the resistance. Resistant Solanum melongena accessions LS1934 and LS2436 and their reciprocal crosses were used as the resistance resource for this validation study. Moreover, classical resistance tests to FOM and Ve were performed with the root-dip inoculation method for classification of all the accessions based on their resistance/susceptibility responses. The SCAR426, CAPs_903 and SIVR844 markers were highly informative for the determination of resistance genes (Fomg, Ve and ERs1). Therefore, in areas with high susceptibility to diseases, a highly efficient combination of the relevant R-genes and their pyramiding into commercial eggplant varieties are proposed to be implemented as a pragmatic approach.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45411162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bo Zhao, Buxian Xia, Jianming Gao, Feng Luo, Qiu-Xing Chen, J. Lv, Ou-Jing Li, Jingwang Li, Xiaopeng Tong, Hui-min Liu, Shoujun Sun, Z. Pei
The stem juice yield is a key factor that influences both the biological and economic production of sweet sorghum [Sorghum dochna (Forssk.) Snowden]. To elucidate upon the genetic basis of the stem juice yield, an F5 population developed from a cross between the low juice yielding Xinliang52 (XL52) and high juice yielding W455 lines, were used in a quantitative trait locus (QTL) analysis. A main effect of the QTL controlling stem juice yield was separated with an SSR marker called Xtxp97, which explained 46.7% of the phenotypic variance. In addition, F5 and F6 populations were constructed with XL52 and W452 as the parents to further verify the QTLs, and a significant correlation was found between the juice yield trait and the Xtxp97 marker. Based on the progeny tests of 29 recombinants, QJy-sbi06 was located in a region of about 21.2 kb on chromosome 6, where a candidate gene encoding an NAC transcription factor (sobic.006G147400) was identified. Combining the different population association analysis and sequencing technology showed that XL52 inserted a 1.8 kb transposon in the NAC to directly interrupt and inactivate the juice yield gene. This study also demonstrated that the colour of the leaf midribs was controlled by a single gene and was significantly positive correlated with juiciness (r = 0.784, P < 0.01). These results could lay the foundation for map-based cloning of QJy-sbi06 and provide genes or QTLs for breeding sorghum lines with a high juice yield and quality.
茎汁产量是影响甜高粱生物生产和经济生产的关键因素。斯诺登)。为阐明茎汁产量的遗传基础，以低汁系新良52 (XL52)与高产系W455杂交而成的F5群体为材料，进行了数量性状位点(QTL)分析。用SSR标记Xtxp97分离出控制茎汁产量的QTL主效应，解释了46.7%的表型变异。此外，以XL52和W452为亲本构建F5和F6群体进一步验证qtl，发现产汁性状与Xtxp97标记之间存在显著相关。通过对29个重组体的子代检测，QJy-sbi06位于6号染色体约21.2 kb的区域，在该区域发现了一个编码NAC转录因子的候选基因(sobic.006G147400)。结合不同群体关联分析和测序技术发现，XL52在NAC中插入了一个1.8 kb的转座子，直接中断并灭活了产汁基因。叶中肋颜色受单基因控制，与多汁性呈极显著正相关(r = 0.784, P < 0.01)。这些结果可为QJy-sbi06的图谱克隆奠定基础，并为选育高产优质高粱品系提供基因或qtl。
{"title":"Study on fine mapping of QTL for juice yield traits of sweet sorghum (Sorghum dochna)","authors":"Bo Zhao, Buxian Xia, Jianming Gao, Feng Luo, Qiu-Xing Chen, J. Lv, Ou-Jing Li, Jingwang Li, Xiaopeng Tong, Hui-min Liu, Shoujun Sun, Z. Pei","doi":"10.17221/48/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/48/2021-cjgpb","url":null,"abstract":"The stem juice yield is a key factor that influences both the biological and economic production of sweet sorghum [Sorghum dochna (Forssk.) Snowden]. To elucidate upon the genetic basis of the stem juice yield, an F5 population developed from a cross between the low juice yielding Xinliang52 (XL52) and high juice yielding W455 lines, were used in a quantitative trait locus (QTL) analysis. A main effect of the QTL controlling stem juice yield was separated with an SSR marker called Xtxp97, which explained 46.7% of the phenotypic variance. In addition, F5 and F6 populations were constructed with XL52 and W452 as the parents to further verify the QTLs, and a significant correlation was found between the juice yield trait and the Xtxp97 marker. Based on the progeny tests of 29 recombinants, QJy-sbi06 was located in a region of about 21.2 kb on chromosome 6, where a candidate gene encoding an NAC transcription factor (sobic.006G147400) was identified. Combining the different population association analysis and sequencing technology showed that XL52 inserted a 1.8 kb transposon in the NAC to directly interrupt and inactivate the juice yield gene. This study also demonstrated that the colour of the leaf midribs was controlled by a single gene and was significantly positive correlated with juiciness (r = 0.784, P < 0.01). These results could lay the foundation for map-based cloning of QJy-sbi06 and provide genes or QTLs for breeding sorghum lines with a high juice yield and quality.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47974901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chamekh Zoubeir, Inès Zouari, Salma Jallouli, S. Ayadi, Sebei Abdennour, Y. Trifa
Use of low-quality water for supplemental irrigation is expected to become soon a common practice in the Mediterranean area, where durum wheat is the main cultivated cereal. Breeding for salt stress tolerance may contribute to the improvement of wheat resilience to irrigation with brackish water. Various traits can be considered as indicators of salt stress tolerance, which include agronomical and physiological criteria. However, the complexity of salinity tolerance mechanisms, the G × E interaction and the lack of correlation between controlled and open field conditions causes uncertainty in the selection process. The present review highlights the main advantages and limitations of different agronomical and physiological traits used in screening for salt stress tolerance in wheat. Special focus is given to carbon and nitrogen isotope discrimination, that remains a bottleneck in breeding for salt stress tolerance. The use of different statistical tools to analyse data related to salt stress tolerance is also discussed in this review.
{"title":"Breeding for salt tolerance in wheat: The contribution of carbon isotopic signatures","authors":"Chamekh Zoubeir, Inès Zouari, Salma Jallouli, S. Ayadi, Sebei Abdennour, Y. Trifa","doi":"10.17221/51/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/51/2021-cjgpb","url":null,"abstract":"Use of low-quality water for supplemental irrigation is expected to become soon a common practice in the Mediterranean area, where durum wheat is the main cultivated cereal. Breeding for salt stress tolerance may contribute to the improvement of wheat resilience to irrigation with brackish water. Various traits can be considered as indicators of salt stress tolerance, which include agronomical and physiological criteria. However, the complexity of salinity tolerance mechanisms, the G × E interaction and the lack of correlation between controlled and open field conditions causes uncertainty in the selection process. The present review highlights the main advantages and limitations of different agronomical and physiological traits used in screening for salt stress tolerance in wheat. Special focus is given to carbon and nitrogen isotope discrimination, that remains a bottleneck in breeding for salt stress tolerance. The use of different statistical tools to analyse data related to salt stress tolerance is also discussed in this review.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2022-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44698798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Twenty hop genotypes were selected for the evaluation of resistance to primary and secondary Pseudoperonospora humuli infection and of alpha acid and hop oil content in the hops. From the wild hop genotypes, two from Canada and one from Belgium showed resistance. Among the registered hop varieties, the Czech varieties Kazbek and Boomerang were the most resistant. Both wild hop genotypes from Canada showed the highest content of alpha acids among the wild hop entries, namely 4% w/w. The lowest variability of the alpha acid content in the wild hop category was found in two wild hop varieties from the Caucasus, one from Austria and one from Lithuania. The highest content of hop oils was determined in two hop genotypes from Canada and two from Belgium. Wild hop genotypes from the Caucasus have the lowest variability of hop oils among the wild hop entries. Two hop genotypes from Canada and one from Belgium were selected for breeding aimed at drought resistance.
{"title":"Evaluation of resistance to Pseudoperonospora humuli and of the content of alpha acids and hop oils in hops of selected genetic resources of hop Humulus lupulus L.","authors":"Markéta Trefilová, V. Nesvadba, J. Charvátová","doi":"10.17221/70/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/70/2021-cjgpb","url":null,"abstract":"Twenty hop genotypes were selected for the evaluation of resistance to primary and secondary Pseudoperonospora humuli infection and of alpha acid and hop oil content in the hops. From the wild hop genotypes, two from Canada and one from Belgium showed resistance. Among the registered hop varieties, the Czech varieties Kazbek and Boomerang were the most resistant. Both wild hop genotypes from Canada showed the highest content of alpha acids among the wild hop entries, namely 4% w/w. The lowest variability of the alpha acid content in the wild hop category was found in two wild hop varieties from the Caucasus, one from Austria and one from Lithuania. The highest content of hop oils was determined in two hop genotypes from Canada and two from Belgium. Wild hop genotypes from the Caucasus have the lowest variability of hop oils among the wild hop entries. Two hop genotypes from Canada and one from Belgium were selected for breeding aimed at drought resistance.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2021-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47083015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Md. Babul Akter, Azad Mosab-Bin, M. Kamruzzaman, R. Reflinur, N. Nahar, M. Rana, M. Hoque, M. Islam
Rice is one of the frontline cereals in the world and the major cultivated crop in Bangladesh. A total of eleven simple sequence repeats (SSRs) and thirteen sequence-tagged site (STS) markers were used to characterize twenty-four rice cultivars in Bangladesh. Twenty-four markers generated 60 alleles with 2.5 alleles per locus. The average polymorphism information content (PIC) value was 0.40, while the mean value of heterozygosity, gene diversity, and major allele frequency were recorded as 0.10, 0.48 and 0.62, respectively. However, the SSR markers showed more specificity and a higher discrimination power than the STS markers. The cluster analysis displayed four major clusters with a genetic similarity coefficient value of 0.73. The morphological analyses of the grain identified that Binadhan-20 and BRRI dhan34 had the longest and the shortest seed size, respectively, with a variable correlation between the seed length, width and length/width ratio. The phenol reaction test distinguished seven cultivars as japonica and seventeen cultivars as indica or an intermediate type. All these results regarding the phenotypic data and marker information will be useful for parental selection in modern rice breeding programmes.
{"title":"Morpho-molecular diversity study of rice cultivars in Bangladesh","authors":"Md. Babul Akter, Azad Mosab-Bin, M. Kamruzzaman, R. Reflinur, N. Nahar, M. Rana, M. Hoque, M. Islam","doi":"10.17221/69/2021-cjgpb","DOIUrl":"https://doi.org/10.17221/69/2021-cjgpb","url":null,"abstract":"Rice is one of the frontline cereals in the world and the major cultivated crop in Bangladesh. A total of eleven simple sequence repeats (SSRs) and thirteen sequence-tagged site (STS) markers were used to characterize twenty-four rice cultivars in Bangladesh. Twenty-four markers generated 60 alleles with 2.5 alleles per locus. The average polymorphism information content (PIC) value was 0.40, while the mean value of heterozygosity, gene diversity, and major allele frequency were recorded as 0.10, 0.48 and 0.62, respectively. However, the SSR markers showed more specificity and a higher discrimination power than the STS markers. The cluster analysis displayed four major clusters with a genetic similarity coefficient value of 0.73. The morphological analyses of the grain identified that Binadhan-20 and BRRI dhan34 had the longest and the shortest seed size, respectively, with a variable correlation between the seed length, width and length/width ratio. The phenol reaction test distinguished seven cultivars as japonica and seventeen cultivars as indica or an intermediate type. All these results regarding the phenotypic data and marker information will be useful for parental selection in modern rice breeding programmes.","PeriodicalId":50598,"journal":{"name":"Czech Journal of Genetics and Plant Breeding","volume":" ","pages":""},"PeriodicalIF":0.9,"publicationDate":"2021-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44110077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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