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Enabling equitable and affordable access to novel therapeutics for pandemic preparedness and response via creative intellectual property agreements 通过创造性的知识产权协议,为防范和应对大流行病提供公平且负担得起的新型疗法
Pub Date : 2024-07-15 DOI: 10.12688/wellcomeopenres.22645.1
Ed J. Griffen, Pascale Boulet
The COVID-19 pandemic demonstrated that the current purely market-driven approaches to drug discovery and development alone are insufficient to drive equitable access to new therapies either in preparation for, or in response to, pandemics. A new global framework driven by equity is under negotiation at the World Health Organization to support pandemic preparedness and response. Some believe that the global intellectual property (IP) system itself is part of the problem and propose a purely Open Science approach. In this article, we discuss how existing IP frameworks and contractual agreements may be used to create rights and obligations to generate a more effective global response in future, drawing on experience gained in the COVID Moonshot program, a purely Open Science collaboration, and the ASAP AViDD drug discovery consortium, which uses a hybrid, phased model of Open Science, patent filing and contractual agreements. We conclude that ‘straight to generic’ drug discovery is appropriate in some domains, and that targeted patent protection, coupled with open licensing, can offer a route to generating affordable and equitable access for therapy areas where market forces have failed. The Extended Data contains a copy of our model IP policy, which can be used as a template by other discovery efforts seeking to ensure their drug candidates can be developed for globally equitable and affordable access.
COVID-19 大流行表明,目前纯粹以市场为导向的药物研发方法不足以推动公平获取新疗法,无论是为大流行病做准备还是应对大流行病。世界卫生组织正在协商建立一个以公平为驱动力的新的全球框架,以支持大流行病的防备和应对工作。一些人认为,全球知识产权(IP)体系本身就是问题的一部分,并提出了一种纯粹的开放科学方法。在本文中,我们将借鉴纯粹的开放科学合作项目 COVID Moonshot 计划和 ASAP AViDD 药物发现联盟(该联盟采用开放科学、专利申请和合同协议的混合分阶段模式)的经验,讨论如何利用现有的知识产权框架和合同协议来创建权利和义务,以便在未来采取更有效的全球应对措施。我们的结论是,"直接转为仿制药 "的药物发现在某些领域是合适的,有针对性的专利保护加上开放许可,可以为市场力量失效的治疗领域提供一条产生可负担得起的公平获取途径。扩展资料中包含了我们的知识产权政策范本,其他寻求确保其候选药物能够在全球范围内以公平、可负担得起的价格进行开发的发现工作可以将其作为模板。
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引用次数: 0
The genome sequence of the European chub, Squalius cephalus (Linnaeus, 1758) 欧洲鲢(Squalius cephalus)(林奈,1758 年)的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22579.1
Richard Pitman, Bernd Hänfling
We present a genome assembly from an individual Squalius cephalus (the European chub; Chordata; Actinopteri; Cypriniformes; Cyprinidae). The genome sequence is 1,101.9 megabases in span. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.61 kilobases in length.
我们展示了一个来自欧洲鲢(Squalius cephalus;脊索动物门;动翅目;鲤形目;鲤科)个体的基因组。基因组序列跨度为 1,101.9 兆字节。大部分序列组装成 25 个染色体假分子支架。线粒体基因组也已组装完成,长度为 16.61 千碱基。
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引用次数: 0
The genome sequence of the Large Red Damselfly Pyrrhosoma nymphula (Sulzer, 1776) 大红豆娘 Pyrrhosoma nymphula (Sulzer, 1776) 的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22586.1
Liam M. Crowley, Denise C. Wawman
We present a genome assembly from an individual male Pyrrhosoma nymphula (the Large Red Damselfly; Arthropoda; Insecta; Odonata; Coenagrionidae). The genome sequence is 2,117.2 megabases in span. Most of the assembly is scaffolded into 14 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.78 kilobases in length.
我们展示了一个雄性 Pyrrhosoma nymphula(大红豆娘;节肢动物门;昆虫纲;鸟纲;鞘翅目)个体的基因组序列。基因组序列跨度为 2,117.2 兆字节。大部分序列组装成 14 个染色体假分子支架,其中包括 X 性染色体。线粒体基因组也已组装完成,长度为 16.78 千碱基。
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引用次数: 0
The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869) 心脏蚶(Fragum sueziense,Issel,1869)的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22585.1
Ruiqi Li, Jingchun Li, Sarah Lemer, J. V. Lopez, Graeme Oatley, Elizabeth Sinclair, Isabelle Ailish Clayton-Lucey, E. Aunin, Noah Gettle, Camilla Santos, Michael Paulini, Haoyu Niu, Victoria McKenna, Rebecca O’Brien
We present a genome assembly from an individual Fragum sueziense (the heart cockle; Mollusca; Bivalvia; Cardiida; Cardiidae). The genome sequence is 1,206.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 92.77 kilobases in length. Gene annotation of this assembly on Ensembl identified 70,309 protein-coding genes.
我们展示了一个 Fragum sueziense(心脏蚶;软体动物门;双壳纲;心脏虫;心脏科)个体的基因组组装。基因组序列跨度为 1,206.1 兆字节。大部分序列组装成 19 个染色体假分子。线粒体基因组也已组装完成,长度为 92.77 千碱基。在 Ensembl 上对该基因组进行的基因注释确定了 70,309 个蛋白质编码基因。
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引用次数: 0
The genome sequence of a drosophilid fruit fly, Drosophila limbata von Roser 1840 嗜果蝇--肢果蝇(Drosophila limbata von Roser 1840)的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22584.1
Darren J. Obbard
We present a genome assembly from an individual male Drosophila limbata (drosophilid fruit fly; Arthropoda; Insecta; Diptera; Drosophilidae). The genome sequence is 233.5 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.09 kilobases in length.
我们展示了一个雄性肢翅果蝇(果蝇科;节肢动物门;昆虫纲;双翅目;果蝇科)个体的基因组序列。基因组序列跨度为 233.5 兆字节。大部分序列组装成 6 个染色体假分子支架。线粒体基因组也已组装完成,长度为 16.09 千碱基。
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引用次数: 0
The genome sequence of Rhynchonycteris naso, Peters, 1867 (Chiroptera, Emballonuridae, Rhynchonycteris) Rhynchonycteris naso, Peters, 1867 (Chiroptera, Emballonuridae, Rhynchonycteris) 的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.19959.1
Ine Alvarez van Tussenbroek, M. Knörnschild, M. Nagy, Brian P. O'Toole, G. Formenti, Philip Philge, Ning Zhang, Linelle Abueg, Nadolina Brajuka, Erich Jarvis, Thomas L. Volkert, Jonathan L. Gray, M. Pieri, Meike Mai, E. Teeling, Sonja C. Vernes
We present a reference genome assembly from an individual male Rhynchonycteris naso (Chordata; Mammalia; Chiroptera; Emballonuridae). The genome sequence is 2.46 Gb in span. The majority of the assembly is scaffolded into 22 chromosomal pseudomolecules, with the Y sex chromosome assembled.
我们展示了来自一只雄性 Rhynchonycteris naso(脊索动物门;哺乳纲;脊索动物;Emballonuridae)个体的参考基因组序列。该基因组序列的跨度为 2.46 Gb。该基因组的大部分序列被组装成 22 个染色体假分子,其中 Y 性染色体已组装完成。
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引用次数: 0
Centering Africa as context and driver for Global Health Ethics: incompleteness, conviviality and the limits of Ubuntu 以非洲为中心,将其作为全球卫生伦理的背景和驱动力:不完整性、共融性和乌班图的局限性
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22508.1
J. de Vries
Silences exist in global health ethics scholarship because of the particular caricatures of Africa that abound in the world, and these silences profoundly impact scholarship in this field. In this paper, I outline three such silences. The first concerns the consequences of representations of Africa as a place of theoretical scarcity, where the only theory seemingly worth mentioning is relational ontology. The second issue I highlight is the impact of dehumanization on global health and ethics. The third concerns the expectation that African science should serve the goal of development, which limits not only the scientific imagination but also the range of ethical questions that are engaged with. Finally, I turn to Francis Nyamnjoh’s theory of incompleteness and conviviality to propose a shift in bioethics scholarship towards increased focus on the interconnections, encounters and mutual dependency of people and places elsewhere. Incompleteness requires epistemic humility and a curiosity about the views and experiences of others; conviviality is the predisposition required to allow for meaningful exchanges and mutual learning in global health ethics. As a theoretical framework, incompleteness and conviviality are part of a rich African intellectual tradition to help articulate opportunities for a transformative research agenda that helps us understand our world, and its crises, better.
由于世界上充斥着对非洲的特殊描绘,全球卫生伦理学学术研究中存在着沉默,而这些沉默深刻地影响着这一领域的学术研究。在本文中,我将概述三种这样的沉默。第一个问题涉及非洲作为理论匮乏之地的表述所带来的后果,在非洲,似乎唯一值得一提的理论就是关系本体论。我强调的第二个问题是非人性化对全球健康和伦理的影响。第三个问题涉及对非洲科学应服务于发展目标的期望,这不仅限制了科学想象力,也限制了所涉及的伦理问题的范围。最后,我引用弗朗西斯-尼亚姆乔的 "不完整性 "和 "融合性 "理论,建议生物伦理学学术研究转向更加关注其他地方的人与人之间的相互联系、相遇和相互依存。不完整性要求认识论上的谦逊以及对他人观点和经验的好奇心;信服性则是在全球卫生伦理学中进行有意义的交流和相互学习所需的倾向性。作为一个理论框架,不完备性和和谐性是丰富的非洲思想传统的一部分,有助于阐明变革性研究议程的机会,帮助我们更好地理解我们的世界及其危机。
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引用次数: 0
Identification of reference microRNAs in skeletal muscle of a canine model of Duchenne muscular dystrophy 鉴定杜氏肌营养不良症犬模型骨骼肌中的参考微RNA
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22481.1
D. Riddell, J. Hildyard, R. Harron, Dominic J. Wells, R. Piercy
Background Duchenne muscular dystrophy (DMD) is a fatal muscle wasting disease caused by mutations in the dystrophin gene. DE50-MD dogs are a canine model of DMD used as final translational models for evaluation of promising treatments. MicroRNA (miR) expressions in the muscle of DE50-MD dogs represent potential biomarkers, but stable reference miRs must first be identified. The aim of this paper was to establish a panel of reference miRs for WT and DE50-MD dogs over a range of ages and muscle groups. Methods RNA was extracted from WT and DE50-MD dog (N=6 per genotype) vastus lateralis muscle samples collected longitudinally at 3, 6, 9, 12, 15 and 18 months of age, and from muscles collected post-mortem (N=3 per genotype; cranial tibial, semimembranosus, lateral triceps and diaphragm). 87 RNAs were quantified in a subset of 6-month-old WT and DE50-MD muscles (N=4 per genotype) using the QIAcuity miFinder panel. GeNorm, BestKeeper and Normfinder were used to identify a candidate panel of the 8 most stable small RNAs, which were then quantified in all RNA samples, alongside the commonly used reference RNA snRNA U6. Results The most stable miRs of this subset were used to normalise quantities of dystromiRs miR-1, miR-133a and miR-206, and fibromiR miR-214. MicroRNAs miR-191, let-7b, miR-125a and miR-15a were the most stable miRs tested, while snRNA U6 performed poorly. DystromiR expression, normalised to the geometric mean of the panel of reference miRs, was lower for miR-1 and miR-133a in DE50-MD compared to WT muscles, while miR-206 levels did not significantly differ between genotypes. FibromiR miR-214 was 2- to 4-fold higher in DE50-MD versus WT muscles. Conclusions A normalisation factor derived from miR-191, let-7b, miR-125a and miR-15a is suitable for normalising miR expression data from WT and DE50-MD muscle over a range of ages and muscle types.
背景 杜兴氏肌营养不良症(DMD)是一种致命的肌肉萎缩性疾病,由肌营养不良蛋白基因突变引起。DE50-MD犬是一种DMD犬科模型,被用作评估有前景的治疗方法的最终转化模型。DE50-MD犬肌肉中的微RNA(miR)表达是潜在的生物标志物,但必须首先确定稳定的参考miR。本文旨在为 WT 狗和 DE50-MD 狗建立一组不同年龄和肌肉群的参考 miR。方法 在狗 3、6、9、12、15 和 18 个月大时纵向采集 WT 和 DE50-MD 狗(每个基因型 6 只)的阔筋肌样本,并从死后采集的肌肉(每个基因型 3 只;颅胫肌、半膜肌、外侧肱三头肌和膈肌)中提取 RNA。使用 QIAcuity miFinder 面板对 6 个月大的 WT 和 DE50-MD 肌肉(每个基因型 4 个)中的 87 个 RNA 进行量化。利用 GeNorm、BestKeeper 和 Normfinder 确定了 8 个最稳定的候选小 RNA,然后在所有 RNA 样品中与常用的参考 RNA snRNA U6 一起进行量化。结果 该子集中最稳定的 miRs 被用来归一化肌营养不良性 RNA miR-1、miR-133a 和 miR-206 以及纤维性 RNA miR-214。microRNAs miR-191、let-7b、miR-125a 和 miR-15a 是所测试的最稳定的 miRs,而 snRNA U6 表现不佳。与 WT 肌肉相比,DE50-MD 的肌张力障碍 miR-1 和 miR-133a 的表达低于参考 miR 小组的几何平均数,而 miR-206 的水平在不同基因型之间没有显著差异。在 DE50-MD 肌肉中,FibromiR miR-214 比 WT 肌肉高 2 到 4 倍。结论 由 miR-191、let-7b、miR-125a 和 miR-15a 导出的归一化因子适用于归一化 WT 和 DE50-MD 肌肉中不同年龄和肌肉类型的 miR 表达数据。
{"title":"Identification of reference microRNAs in skeletal muscle of a canine model of Duchenne muscular dystrophy","authors":"D. Riddell, J. Hildyard, R. Harron, Dominic J. Wells, R. Piercy","doi":"10.12688/wellcomeopenres.22481.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22481.1","url":null,"abstract":"Background Duchenne muscular dystrophy (DMD) is a fatal muscle wasting disease caused by mutations in the dystrophin gene. DE50-MD dogs are a canine model of DMD used as final translational models for evaluation of promising treatments. MicroRNA (miR) expressions in the muscle of DE50-MD dogs represent potential biomarkers, but stable reference miRs must first be identified. The aim of this paper was to establish a panel of reference miRs for WT and DE50-MD dogs over a range of ages and muscle groups. Methods RNA was extracted from WT and DE50-MD dog (N=6 per genotype) vastus lateralis muscle samples collected longitudinally at 3, 6, 9, 12, 15 and 18 months of age, and from muscles collected post-mortem (N=3 per genotype; cranial tibial, semimembranosus, lateral triceps and diaphragm). 87 RNAs were quantified in a subset of 6-month-old WT and DE50-MD muscles (N=4 per genotype) using the QIAcuity miFinder panel. GeNorm, BestKeeper and Normfinder were used to identify a candidate panel of the 8 most stable small RNAs, which were then quantified in all RNA samples, alongside the commonly used reference RNA snRNA U6. Results The most stable miRs of this subset were used to normalise quantities of dystromiRs miR-1, miR-133a and miR-206, and fibromiR miR-214. MicroRNAs miR-191, let-7b, miR-125a and miR-15a were the most stable miRs tested, while snRNA U6 performed poorly. DystromiR expression, normalised to the geometric mean of the panel of reference miRs, was lower for miR-1 and miR-133a in DE50-MD compared to WT muscles, while miR-206 levels did not significantly differ between genotypes. FibromiR miR-214 was 2- to 4-fold higher in DE50-MD versus WT muscles. Conclusions A normalisation factor derived from miR-191, let-7b, miR-125a and miR-15a is suitable for normalising miR expression data from WT and DE50-MD muscle over a range of ages and muscle types.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"28 19","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141662447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The genome sequence of Blair’s Shoulder-knot, Lithophane leautieri (Boisduval, 1829) 布莱尔肩结石斑鱼(Boisduval,1829)的基因组序列
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22610.1
David C. Lees
We present a genome assembly from an individual male Lithophane leautieri (Blair’s Shoulder-knot; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 521.7 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,254 protein coding genes.
我们展示了一个雄性个体 Lithophane leautieri(布莱尔肩结;节肢动物门;昆虫纲;鳞翅目;夜蛾科)的基因组序列。基因组序列跨度为 521.7 兆字节。大部分序列组装成 31 个染色体假分子支架,其中包括 Z 性染色体。线粒体基因组也已组装完成,长度为 15.4 千碱基。在 Ensembl 上对该基因组进行的基因注释确定了 12,254 个蛋白质编码基因。
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引用次数: 0
The first BILGENSA Research Network workshop in Zambia: identifying research priorities, challenges and needs in genital bilharzia in Southern Africa 赞比亚首届 BILGENSA 研究网络研讨会:确定南部非洲生殖器血吸虫病研究的优先事项、挑战和需求
Pub Date : 2024-07-10 DOI: 10.12688/wellcomeopenres.22429.1
Rhoda Ndubani, Olimpia Lamberti, Anna Kildemoes, Pytsje T Hoekstra, Jennifer Fitzpatrick, Helen Kelly, B. Vwalika, Bodo S. Randrianasolo, Amy S Sturt, Seke Kayuni, Augustine T Choko, Nkatya Kasese, Eyrun Kjetland, T. Nemungadi, S. Mocumbi, Anna Samson, Elizabeth Ntapara, Anifrid Thomson, Elizabeth Danstan, Chido Dziya Chikwari, K. Martin, Ibrahim Rabiu, Gifty Terkie, David Chaima, Manuel Kasoka, Karoline Joeker, Louise T. S. Arenholt, Peter Leutscher, Russel Stothard, Oliva Rabozakandria, A. Gouvras, Tendai Munthali, Grace Hameja, Paul Kanfwa, Halwindi Hikabasa, H. Ayles, K. Shanaube, A. Bustinduy
Female genital schistosomiasis (FGS) and male genital schistosomiasis (MGS) are gender-specific manifestations of urogenital schistosomiasis. Morbidity is a consequence of prolonged inflammation in the human genital tract caused by the entrapped eggs of the waterborne parasite, Schistosoma (S.) haematobium. Both diseases affect the sexual and reproductive health (SRH) of millions of people globally, especially in sub-Sahara Africa (SSA). Awareness and knowledge of these diseases is largely absent among affected communities and healthcare workers in endemic countries. Accurate burden of FGS and MGS disease estimates, single and combined, are absent, mostly due to the absence of standardized methods for individual or population-based screening and diagnosis. In addition, there are disparities in country-specific FGS and MGS knowledge, research and implementation approaches, and diagnosis and treatment. There are currently no WHO guidelines to inform practice. The BILGENSA (Genital Bilharzia in Southern Africa) Research Network aimed to create a collaborative multidisciplinary network to advance clinical research of FGS and MGS across Southern African endemic countries. The workshop was held in Lusaka, Zambia over two days in November 2022. Over 150 researchers and stakeholders from different schistosomiasis endemic settings attended. Attendees identified challenges and research priorities around FGS and MGS from their respective countries. Key research themes identified across settings included: 1) To increase the knowledge about the local burden of FGS and MGS; 2) To raise awareness among local communities and healthcare workers; 3) To develop effective and scalable guidelines for disease diagnosis and management; 4) To understand the effect of treatment interventions on disease progression, and 5) To integrate FGS and MGS within other existing sexual and reproductive health (SRH) services. In its first meeting, the BILGENSA Network set forth a common research agenda across S. haematobium endemic countries for the control of FGS and MGS.
女性生殖器血吸虫病(FGS)和男性生殖器血吸虫病(MGS)是泌尿生殖器血吸虫病的性别特异性表现。发病原因是水媒寄生虫血吸虫(S. schistosoma (S. haematobium))夹带的虫卵导致人体生殖道长期发炎。这两种疾病影响着全球数百万人的性健康和生殖健康(SRH),尤其是在撒哈拉以南非洲地区(SSA)。地方病流行国家的受影响社区和医护人员对这些疾病的认识和了解大多不足。主要由于缺乏基于个人或人群的筛查和诊断的标准化方法,目前还没有对单一和合并的家庭和社区保健以及男性和女性保健疾病负担的准确估计。此外,各国在对新生儿和儿童腮腺炎的认识、研究和实施方法以及诊断和治疗方面也存在差异。目前世界卫生组织还没有指导实践的指南。BILGENSA(南部非洲生殖器血吸虫病)研究网络旨在建立一个多学科合作网络,以推动南部非洲流行国家对生殖器血吸虫病和疟疾的临床研究。研讨会于 2022 年 11 月在赞比亚卢萨卡举行,为期两天。来自不同血吸虫病流行地区的 150 多名研究人员和利益相关者参加了会议。与会者确定了各自国家在血吸虫病疫情防治和血吸虫病监测方面面临的挑战和研究重点。在不同环境中确定的主要研究主题包括1) 增加对当地血吸虫病负担的了解;2) 提高当地社区和医护人员的认识;3) 制定有效、可推广的疾病诊断和管理指南;4) 了解治疗干预对疾病进展的影响;5) 将血吸虫病和疟疾纳入其他现有的性与生殖健康(SRH)服务。在其第一次会议上,BILGENSA 网络提出了在血吸虫流行国家控制血吸虫病的共同研究议程。
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引用次数: 0
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Wellcome Open Research
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