Pub Date : 2024-08-08DOI: 10.12688/wellcomeopenres.22825.1
Patrick Adkins, R. Brittain, Kesella Scott-Somme
We present a genome assembly from an individual female Raja brachyura (Blonde Ray; Chordata; Chondrichthyes; Rajiformes; Rajidae). The genome sequence spans 2,700.50 megabases. Most of the assembly is scaffolded into 49 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.12 kilobases in length. Gene annotation of this assembly on Ensembl identified 24,252 protein-coding genes.
我们展示了一个来自雌性个体 Raja brachyura（金鳐；脊索动物门；软骨鱼类；鳐形目；鳐科）的基因组序列。基因组序列跨度为 2,700.50 兆字节。大部分基因组组装成 49 个染色体假分子支架，其中包括 X 性染色体。线粒体基因组也已组装完成，长度为 17.12 千碱基。在 Ensembl 上对该基因组进行的基因注释确定了 24,252 个蛋白质编码基因。
{"title":"The genome sequence of the blonde ray, Raja brachyura Lafont, 1871","authors":"Patrick Adkins, R. Brittain, Kesella Scott-Somme","doi":"10.12688/wellcomeopenres.22825.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22825.1","url":null,"abstract":"We present a genome assembly from an individual female Raja brachyura (Blonde Ray; Chordata; Chondrichthyes; Rajiformes; Rajidae). The genome sequence spans 2,700.50 megabases. Most of the assembly is scaffolded into 49 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.12 kilobases in length. Gene annotation of this assembly on Ensembl identified 24,252 protein-coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"18 15","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141926906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-08DOI: 10.12688/wellcomeopenres.22819.1
Matthew Berriman, Sarah Buddenborg
We present a genome assembly from an individual Biomphalaria glabrata (the bloodfluke planorb; Mollusca; Gastropoda; Planorbidae). The genome sequence spans 850.60 megabases. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 13.67 kilobases in length. Gene annotation of this assembly on Ensembl identified 25,327 protein-coding genes.
{"title":"The genome sequence of the bloodfluke planorb, Biomphalaria glabrata (Say, 1818)","authors":"Matthew Berriman, Sarah Buddenborg","doi":"10.12688/wellcomeopenres.22819.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22819.1","url":null,"abstract":"We present a genome assembly from an individual Biomphalaria glabrata (the bloodfluke planorb; Mollusca; Gastropoda; Planorbidae). The genome sequence spans 850.60 megabases. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 13.67 kilobases in length. Gene annotation of this assembly on Ensembl identified 25,327 protein-coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"3 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141926063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22743.1
L. Feyrer, Evelien de Greef
We present a genome assembly from an individual female Hyperoodon ampullatus (the Northern Bottlenose Whale; Chordata; Mammalia; Artiodactyla; Ziphiidae). The genome sequence spans 2,828.70 megabases. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.34 kilobases in length.
我们展示了一只雌性北瓶鼻鲸（Hyperoodon ampullatus，脊索动物门；哺乳纲；有齿目；Ziphiidae）的基因组序列。基因组序列跨度为 2,828.70 兆字节。基因组的大部分装配被支架化为 21 个染色体假分子，其中包括 X 性染色体。线粒体基因组也已组装完成，长度为 16.34 千碱基。
{"title":"The genome sequence of the Northern Bottlenose Whale, Hyperoodon ampullatus (Forster, 1770)","authors":"L. Feyrer, Evelien de Greef","doi":"10.12688/wellcomeopenres.22743.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22743.1","url":null,"abstract":"We present a genome assembly from an individual female Hyperoodon ampullatus (the Northern Bottlenose Whale; Chordata; Mammalia; Artiodactyla; Ziphiidae). The genome sequence spans 2,828.70 megabases. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.34 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"26 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141799258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22760.1
Sérgio Henriques
We present a genome assembly from an individual female Odiellus spinosus (harvestman spider; Arthropoda; Arachnida; Opiliones; Phalangiidae). The genome sequence spans 443.70 megabases. Most of the assembly is scaffolded into 16 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.07 kilobases in length.
{"title":"The genome sequence of the harvestman spider, Odiellus spinosus (Bosc, 1792)","authors":"Sérgio Henriques","doi":"10.12688/wellcomeopenres.22760.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22760.1","url":null,"abstract":"We present a genome assembly from an individual female Odiellus spinosus (harvestman spider; Arthropoda; Arachnida; Opiliones; Phalangiidae). The genome sequence spans 443.70 megabases. Most of the assembly is scaffolded into 16 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.07 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"40 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141800401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22746.1
James McCulloch, Liam M. Crowley
We present a genome assembly from an individual male Lordithon lunulatus (rove beetle; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence spans 674.40 megabases. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 19.26 kilobases in length.
{"title":"The genome sequence of a rove beetle, Lordithon lunulatus (Linnaeus, 1760)","authors":"James McCulloch, Liam M. Crowley","doi":"10.12688/wellcomeopenres.22746.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22746.1","url":null,"abstract":"We present a genome assembly from an individual male Lordithon lunulatus (rove beetle; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence spans 674.40 megabases. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 19.26 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"24 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141802174","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22763.1
Gavin R. Broad, Inez Januszczak
We present a genome assembly from an individual male Cyclophora punctaria (the Maiden's Blush; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence spans 301.50 megabases. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.86 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,090 protein-coding genes.
{"title":"The genome sequence of the Maiden’s Blush moth, Cyclophora punctaria (Linnaeus, 1758)","authors":"Gavin R. Broad, Inez Januszczak","doi":"10.12688/wellcomeopenres.22763.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22763.1","url":null,"abstract":"We present a genome assembly from an individual male Cyclophora punctaria (the Maiden's Blush; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence spans 301.50 megabases. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.86 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,090 protein-coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"39 35","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141800107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22738.1
Gavin R. Broad, Iona Cunningham-Eurich
We present a genome assembly from an individual female Aleiodes testaceus (braconid wasp; Arthropoda; Insecta; Hymenoptera; Braconidae). The genome sequence spans 110.70 megabases. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 28.0 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,520 protein-coding genes.
{"title":"The genome sequence of a braconid wasp, Aleiodes testaceus (Telenga, 1941)","authors":"Gavin R. Broad, Iona Cunningham-Eurich","doi":"10.12688/wellcomeopenres.22738.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22738.1","url":null,"abstract":"We present a genome assembly from an individual female Aleiodes testaceus (braconid wasp; Arthropoda; Insecta; Hymenoptera; Braconidae). The genome sequence spans 110.70 megabases. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 28.0 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,520 protein-coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"14 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141800989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22759.1
Gavin R. Broad
We present a genome assembly from an individual female Catocala sponsa (the Dark Crimson Underwing; Arthropoda; Insecta; Lepidoptera; Erebidae). The genome sequence spans 803.70 megabases. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the Z and W sex chromosomes. The mitochondrial genome has also been assembled and is 15.57 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,493 protein-coding genes.
我们展示了一个雌性个体 Catocala sponsa（暗红色暗翅虫；节肢动物门；昆虫纲；鳞翅目；鞘翅目）的基因组序列。基因组序列跨度为 803.70 兆字节。大部分基因组组装成 32 个染色体假分子支架，包括 Z 和 W 性染色体。线粒体基因组也已组装完成，长度为 15.57 千碱基。在 Ensembl 上对该基因组进行的基因注释发现了 13,493 个编码蛋白质的基因。
{"title":"The genome sequence of the Dark Crimson Underwing moth, Catocala sponsa Linnaeus, 1767","authors":"Gavin R. Broad","doi":"10.12688/wellcomeopenres.22759.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22759.1","url":null,"abstract":"We present a genome assembly from an individual female Catocala sponsa (the Dark Crimson Underwing; Arthropoda; Insecta; Lepidoptera; Erebidae). The genome sequence spans 803.70 megabases. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the Z and W sex chromosomes. The mitochondrial genome has also been assembled and is 15.57 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,493 protein-coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"11 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141801603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22742.1
Andy D. Nunn, Paolo Moccetti, Bernd Hänfling
We present a genome assembly from an individual female Gobio gobio (the gudgeon; Chordata; Actinopteri; Cypriniformes; Gobionidae). The genome sequence spans 1,460.70 megabases. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.61 kilobases in length.
{"title":"The genome sequence of the gudgeon, Gobio gobio (Linnaeus, 1758)","authors":"Andy D. Nunn, Paolo Moccetti, Bernd Hänfling","doi":"10.12688/wellcomeopenres.22742.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22742.1","url":null,"abstract":"We present a genome assembly from an individual female Gobio gobio (the gudgeon; Chordata; Actinopteri; Cypriniformes; Gobionidae). The genome sequence spans 1,460.70 megabases. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.61 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"32 50","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141800630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.12688/wellcomeopenres.22740.1
Sue Skipp, C. Macadam, Benjamin W. Price
We present a genome assembly from an individual male Brachyptera risi (the Common February Red Stonefly; Arthropoda; Insecta; Plecoptera; Taeniopterygidae). The genome sequence spans 680.20 megabases. Most of the assembly is scaffolded into 14 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.58 kilobases in length.
{"title":"The genome sequence of the Common February Red Stonefly, Brachyptera risi (Morton, 1896)","authors":"Sue Skipp, C. Macadam, Benjamin W. Price","doi":"10.12688/wellcomeopenres.22740.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22740.1","url":null,"abstract":"We present a genome assembly from an individual male Brachyptera risi (the Common February Red Stonefly; Arthropoda; Insecta; Plecoptera; Taeniopterygidae). The genome sequence spans 680.20 megabases. Most of the assembly is scaffolded into 14 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.58 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"26 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141801962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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