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Orthohantavirus Infection in Two Rodent Species that Inhabit Wetlands in Argentina 阿根廷两种栖息于湿地的啮齿动物的正呼肠孤病毒感染情况
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-13 DOI: 10.1007/s10393-023-01661-8
Malena Maroli, Carla M. Bellomo, Rocío M. Coelho, Valeria P. Martinez, Carlos I. Piña, Isabel E. Gómez Villafañe

Previous research conducted in central-east region of Argentina recorded potential orthohantavirus host rodents in diverse environments, but no research has focused particularly on islands, the environments that present the greatest risk to humans. For this reason, the aims of this research were to determine the orthohantavirus host in the rodent community focused on islands of Paraná River Delta, central-east region of Argentina, to identify temporal and spatial factors associated with orthohantavirus prevalence variations, to compare the functional traits of seropositive and seronegative rodents, and to explore the association between orthohantavirus prevalence and rodent community characteristics between August 2014 and May 2018. With a trapping effort of 14,600 trap-nights, a total of 348 sigmodontine rodent specimens belonging to seven species were captured 361 times. The overall antibody prevalence was 4.9%. Particularly, 14.9% of Oligoryzomys flavescens and 1.5% of Oxymycterus rufus, mainly reproductively active adult males, had antibodies against orthohantavirus. Even though O. flavescens inhabit all islands, our results suggest spatial heterogeneity in the viral distribution, with two months after periods of low temperature presenting increases in seroprevalence. This could be a response to the increased proportion of adults present in the rodent population. In addition, an association was found between the high seroprevalence and the diversity of the rodent assemblage. We also found 1.5% of O. rufus exposed to orthohantavirus, which shows us that further investigation of the ecology of the virus is needed to answer whether this species act as a spillover or a new competent host.

先前在阿根廷中东部地区进行的研究记录了不同环境中潜在的正汉坦病毒宿主啮齿动物,但没有研究特别关注对人类构成最大风险的岛屿环境。因此,本研究旨在确定阿根廷中东部地区帕拉南河三角洲岛屿啮齿动物群落中正汉坦病毒的宿主,确定影响正汉坦病毒流行变化的时空因素,比较血清阳性和血清阴性啮齿动物的功能特征,探讨2014年8月至2018年5月间正汉坦病毒流行与啮齿动物群落特征的关系。共捕获7种鼠类348只,共捕获361次。抗体总患病率为4.9%。特别是,14.9%的黄少分枝菌和1.5%的鲁弗斯oxymyterus,主要是繁殖活跃的成年雄性,具有正汉坦病毒抗体。尽管所有岛屿上都有黄叶大叶蝉,但我们的研究结果表明,黄叶大叶蝉的病毒分布存在空间异质性,在低温过后两个月,黄叶大叶蝉的血清阳性率有所上升。这可能是对啮齿动物种群中成年人比例增加的反应。此外,发现高血清阳性率与啮齿动物组合的多样性之间存在关联。我们还发现1.5%的鲁弗斯O. rufus暴露于正汉坦病毒,这表明我们需要进一步调查该病毒的生态学,以回答该物种是作为溢出物还是新的胜任宿主。
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引用次数: 0
Bacterial and Viral Diversity of Didelphid Opossums from Brazil 巴西负鼠的细菌和病毒多样性
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-13 DOI: 10.1007/s10393-023-01667-2
Leonardo Cardia Caserta, Gabriela Mansano do Nascimento, Lok Raj Joshi, Raphael Mausbach Simão, Michael E. Miller, Paulo A. Nunes Felippe, Diego G. Diel, Clarice Weis Arns

Marsupials belonging to the Didelphis genus are widely distributed in the American Continent, and Didelphis albiventris and Didelphis aurita, are common in all of their areas of distribution in Brazil. Here we describe the bacterial and viral diversity of samples from opossums captured in three forest fragments in the State of São Paulo, Brazil. Microbiomes from the same body site were more similar across species and sampling sites while oral swabs presented higher bacterial diversity than rectal swabs. We also identified sequences related to bacterial species involved in zoonotic diseases. The detection of pathogens in such abundant mammal species warns for the possibility of emergence in other species.

Didelphis属有袋类动物广泛分布于美洲大陆,而Didelphis albiventris和Didelphis aurita在巴西的所有分布区域都很常见。在这里,我们描述了在巴西圣保罗州的三个森林片段中捕获的负鼠样本的细菌和病毒多样性。来自同一身体部位的微生物组在不同物种和采样点之间更为相似,而口腔拭子的细菌多样性高于直肠拭子。我们还确定了与人畜共患疾病有关的细菌种类的序列。在如此丰富的哺乳动物物种中检测到病原体,警告了其他物种出现病原体的可能性。
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引用次数: 0
Metagenomic and Molecular Detection of Novel Fecal Viruses in Free-Ranging Agile Wallabies 自由活动的敏捷小袋鼠新型粪便病毒的元基因组和分子检测
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-13 DOI: 10.1007/s10393-023-01659-2
God’spower Richard Okoh, Ellen Ariel, David Whitmore, Paul F. Horwood

The agile wallaby (Notamacropus agilis) is one of the most abundant marsupial species in northern Queensland and a competent host for the zoonotic Ross River virus. Despite their increased proximity and interactions with humans, little is known about the viruses carried by these animals, and whether any are of conservation or zoonotic importance. Metagenomics and molecular techniques were used in a complementary manner to identify and characterize novel viruses in the fecal samples of free-ranging agile wallabies. We detected a variety of novel marsupial-related viral species including agile wallaby atadenovirus 1, agile wallaby chaphamaparvovirus 1–2, agile wallaby polyomavirus 1–2, agile wallaby associated picobirnavirus 1–9, and a known macropod gammaherpesvirus 3. Phylogenetic analyses indicate that most of these novel viruses would have co-evolved with their hosts (agile wallabies). Additionally, non-marsupial viruses that infect bacteria (phages), plants, insects, and other eukaryotes were identified. This study highlighted the utility of non-invasive sampling as well as the integration of broad-based molecular assays (consensus PCR and next generation sequencing) for monitoring the emergence of potential pathogenic viruses in wildlife species. Furthermore, the novel marsupial viruses identified in this study will enrich the diversity of knowledge about marsupial viruses, and may be useful for developing diagnostics and vaccines.

敏捷的小袋鼠(Notamacropus agilis)是昆士兰州北部最丰富的有袋类动物之一,也是人畜共患的罗斯河病毒的宿主。尽管它们与人类的接触和相互作用越来越近,但人们对这些动物携带的病毒知之甚少,也不知道其中是否有保护或人畜共患的重要性。利用元基因组学和分子技术相辅相成的方式,鉴定和表征自由放养的敏捷小袋鼠粪便样本中的新型病毒。我们检测到多种新的有袋动物相关病毒,包括敏捷小袋鼠腺病毒1、敏捷小袋鼠chaphamaparvovirus 1 - 2、敏捷小袋鼠多瘤病毒1 - 2、敏捷小袋鼠相关小核糖核酸病毒1 - 9和已知的大足动物伽玛疱疹病毒3。系统发育分析表明,大多数这些新型病毒将与它们的宿主(敏捷的小袋鼠)共同进化。此外,还发现了感染细菌(噬菌体)、植物、昆虫和其他真核生物的非有袋动物病毒。这项研究强调了非侵入性采样以及广泛的分子分析(共识PCR和下一代测序)在监测野生动物物种中潜在致病性病毒出现方面的应用。此外,本研究发现的新型有袋动物病毒将丰富有袋动物病毒知识的多样性,并可能对开发诊断和疫苗有用。
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引用次数: 0
No Evidence of Rabies Exposure in Wild Marmosets (Callithrix jacchus) of Northeast Brazil. 没有证据表明巴西东北部的野生狨猴(Callithrix jacchus)接触过狂犬病。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2024-01-18 DOI: 10.1007/s10393-023-01663-6
Julio A Benavides, Jane Megid, Juliana Galera Castilho, Carla I Macedo, Regina Maria Mourão Fuches, Neuza Maria Frazatti Gallina, Vanner Boere, Bruna Zalafon-Silva, Ramiro Monã da Silva, José Flávio Vidal Coutinho, Maria de Fatima Arruda, Ita de Oliveira E Silva, Mônica Mafra Valença-Montenegro, Jefferson Farias Cordeiro, Silvana Leal, Cintia de Sousa Higashi, Fabíola de Souza Medeiros, Alene Uchoa de Castro, Rodrigo Rizzo, Fabio Antonio Sena, Paola de Cassia Gonçalves, Silene Manrique Rocha, Marcelo Wada, Alexander Vargas, Maria Luiza Carrieri, Ivanete Kotait

Rabies transmitted by wildlife is the main source of human rabies mortality in Latin America and considered an emerging disease. The common marmoset Callithrix jacchus of Brazil is the only known primate reservoir of rabies worldwide. We tested whether alive free-ranging C. jacchus were exposed to rabies in four northeast states that have previously reported rabies-positive dead C. jacchus (Pernambuco and Bahia) or not (Paraíba and Rio Grande do Norte). Our results show no evidence of rabies antibodies or infection in the sampled C. jacchus, suggesting that apparently healthy marmosets are not widely exposed to rabies over their natural range.

野生动物传播的狂犬病是拉丁美洲人类狂犬病死亡的主要来源,被认为是一种新出现的疾病。巴西的普通狨猴(Callithrix jacchus)是全球唯一已知的狂犬病灵长类动物贮藏地。我们在东北部四个州(伯南布哥州和巴伊亚州)检测了自由放养的活狨猴是否暴露于狂犬病,这四个州以前曾报告过狂犬病阳性的狨猴尸体(帕拉伊巴州和北里奥格兰德州)。我们的研究结果表明,在采样的狨猴中没有狂犬病抗体或感染的证据,这表明表面上健康的狨猴在其自然分布范围内并未广泛接触狂犬病。
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引用次数: 0
Batrachochytrium dendrobatidis in the Arid and Thermally Extreme Sonoran Desert. 干旱和高温极端地区索诺兰沙漠中的树蝙蝠蚤(Batrachochytrium dendrobatidis)。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2024-01-19 DOI: 10.1007/s10393-023-01668-1
Sadie A Roth, Kerry L Griffis-Kyle, Matthew A Barnes

Batrachochytrium dendrobatidis (Bd), the causative agent of the devastating global amphibian disease chytridiomycosis, was not projected to threaten amphibians in hot and arid regions due to its sensitivity to heat and desiccation. However, Bd is being detected more frequently than ever in hot and arid regions of Australia and the USA, challenging our current understanding of the environmental tolerances of the pathogen under natural conditions. We surveyed for Bd in an extremely hot and arid portion of the Sonoran Desert, where the pathogen is not projected to occur, and related presence and prevalence of the pathogen to local environmental conditions. We collected eDNA samples from isolated desert water sites including six tinajas and 13 catchments in June and August of 2020 and swabbed a total of 281 anurans of three species (red-spotted toad Anaxyrus punctatus, Couch's spadefoot Scaphiopus couchii, and the Sonoran Desert toad Incillius alvarius) across five catchments and six tinajas from June to September of 2020. Overall, Bd occurred at 68.4% of sites, despite extreme heat and aridity routinely exceeding tolerances established in laboratory studies. Average summer maximum air and water temperatures were 40.7°C and 30.7°C, respectively, and sites received an average of just 16.9 mm of precipitation throughout the summer monsoon season. Prevalence was low (5.7%) across species and life stage. Our results demonstrate that Bd is capable of persisting and infecting amphibians beyond its projected range, indicating a need to account for higher thermal tolerances when quantifying risk of Bd presence and infection.

蝙蝠疫霉菌(Bd)是全球毁灭性两栖动物疾病糜烂性真菌病的病原体,由于其对高温和干燥的敏感性,预计不会对炎热干旱地区的两栖动物造成威胁。然而,在澳大利亚和美国的炎热干旱地区,发现 Bd 的频率比以往任何时候都要高,这对我们目前了解病原体在自然条件下对环境的耐受性提出了挑战。我们在索诺兰沙漠极度炎热和干旱的地区(预计不会出现这种病原体)进行了 Bd 调查,并将病原体的存在和流行与当地环境条件联系起来。2020 年 6 月和 8 月,我们从隔离的沙漠水源地(包括 6 个锡纳哈斯和 13 个集水区)采集了 eDNA 样本,并在 2020 年 6 月至 9 月期间对 5 个集水区和 6 个锡纳哈斯的 3 个物种(红点蟾蜍 Anaxyrus punctatus、库奇锹形目 Scaphiopus couchii 和索诺拉沙漠蟾蜍 Incillius alvarius)共 281 只无尾类动物进行了拭子采集。总体而言,尽管极端高温和干旱经常超过实验室研究确定的耐受能力,但仍有 68.4% 的地点出现了 Bd。夏季平均最高气温和水温分别为 40.7 摄氏度和 30.7 摄氏度,在整个夏季季风季节,这些地点的平均降水量仅为 16.9 毫米。各物种和各生命阶段的发病率都很低(5.7%)。我们的研究结果表明,Bd能够在预测范围之外持续存在并感染两栖动物,这表明在量化Bd存在和感染风险时需要考虑更高的热耐受性。
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引用次数: 0
Exposure to Brucella spp. in Humans and Cows in a High Milk-Producing Area of Bangladesh. 孟加拉国牛奶高产区的人类和奶牛接触布鲁氏菌的情况。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2023-12-21 DOI: 10.1007/s10393-023-01660-9
Ireen Sultana Shanta, James D Heffelfinger, Kamal Hossain, Firoz Ahmed, Mohammad Abdullah Heel Kafi, Shabiha Sultana, Rebekah Tiller, Erin D Kennedy, Melissa Kadzik, Melissa L Ivey, Ausraful Islam, Syed Sayeem Uddin Ahmed, A K M Anisur Rahman, Md Giasuddin, Maria E Negron, Johanna S Salzer

Brucellosis is a zoonotic disease, caused by some species within the Brucella genus. The primary and secondary objectives of this cross-sectional study were to determine the seroprevalence of Brucella antibodies in humans and cows and identify risk factors for exposure to Brucella spp. among people in Shahjadpur sub-district, Bangladesh. Twenty-five villages were randomly selected from the 303 milk-producing villages in the sub-district. We randomly selected 5% of the total households from each village. At each household, we collected demographic information and history of potential exposure to Brucella spp. in humans. In addition, we collected serum from household participants and serum and milk from cattle and tested to detect antibodies to Brucella sp. Univariate analysis was performed to detect associations between seropositivity and demographics, risk factors, and behaviors in households. We enrolled 647 households, 1313 humans, and 698 cows. Brucella antibodies were detected in sera from 27 household participants (2.1%, 95% confidence interval [95%CI]: 1.2-2.9%). Eleven (1.6%, 95%CI 0.6-2.4%) cows had detectable Brucella antibodies in either milk or serum. About half (53%) of the 698 cows exhibited more than one reproductive problem within the past year; of these, seven (2%) had Brucella antibodies. Households with seropositive individuals more frequently reported owning cattle (78% vs. 32%, P < 0.001). Despite a low prevalence of Brucella seropositivity in the study, the public health importance of brucellosis cannot be ruled out. Further studies would help define Brucella prevalence and risk factors in this region and nationally.

布鲁氏菌病是一种人畜共患病,由布鲁氏菌属中的某些菌种引起。这项横断面研究的主要目标和次要目标是确定布鲁氏菌抗体在人和奶牛中的血清流行率,并确定孟加拉国 Shahjadpur 县居民接触布鲁氏菌的风险因素。我们从该分区的 303 个牛奶生产村中随机抽取了 25 个村。我们从每个村庄随机抽取了总户数的 5%。在每个家庭中,我们都收集了人口信息和人类可能接触布鲁氏菌的历史。此外,我们还采集了家庭参与者的血清以及牛的血清和牛奶,并对其进行了布鲁氏菌抗体检测。 我们还进行了单变量分析,以检测血清阳性与家庭人口统计学、风险因素和行为之间的关联。我们登记了 647 个家庭、1313 名人类和 698 头奶牛。在 27 个家庭参与者(2.1%,95% 置信区间 [95%CI]:1.2-2.9%)的血清中检测到布鲁氏菌抗体。11头奶牛(1.6%,95% 置信区间 0.6-2.4%)的牛奶或血清中检测到布鲁氏菌抗体。在 698 头奶牛中,约有一半(53%)在过去一年中出现过一次以上的繁殖问题;其中 7 头(2%)的奶牛体内有布鲁氏杆菌抗体。血清反应呈阳性的家庭拥有牛的比例更高(78% 对 32%,P<0.05)。
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引用次数: 0
Cattle Farming and Plantation Forest are Associated with Bartonella Occurrence in Wild Rodents. 养牛业和人工林与野生啮齿动物中巴顿氏菌的出现有关。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2024-01-09 DOI: 10.1007/s10393-023-01671-6
Valeria C Colombo, Leandro R Antoniazzi, Gabriel L Cicuttin, María N De Salvo, Pablo M Beldomenico, Lucas D Monje

Bartonella spp. are intracellular hemotropic bacteria primarily transmitted by arthropod vectors to various mammalian hosts, including humans. In this study, we conducted a survey on wild populations of sigmodontine rodents, Akodon azarae and Oxymycterus rufus, inhabiting the Paraná River delta region. The study involved eight grids organized in a crossed 2 × 2 design, where four of the grids were exposed to cattle while the other four were not, and four grids were located in implanted forest while the remaining four were in natural grasslands. Our objective was to examine whether the occurrence of Bartonella spp. in rodents was associated with silvopastoral activities (cattle raising associated with timber production) conducted in the region. Additionally, we evaluated the associations between Bartonella infection and other environmental and host factors. We present compelling evidence of a significant positive association between Bartonella prevalence and the presence of implanted forests and cattle. Furthermore, we identified the presence of a Bartonella genotype related to the pathogen Bartonella rochalimaea, infecting both A. azarae and Ox. rufus. These findings suggest that anthropogenic land-use changes, particularly the development of silvopastoral practices in the region, may disrupt the dynamics of Bartonella.

巴顿氏菌属是一种细胞内血液传播细菌,主要通过节肢动物媒介传播给包括人类在内的各种哺乳动物宿主。在这项研究中,我们对栖息在巴拉那河三角洲地区的西格蒙德啮齿动物 Akodon azarae 和 Oxymycterus rufus 的野生种群进行了调查。研究采用 2 × 2 交叉设计,共划分了八个网格,其中四个网格有牛群出没,另外四个网格没有牛群出没;四个网格位于人工种植的森林中,其余四个网格位于天然草地上。我们的目的是研究啮齿动物体内巴顿氏杆菌的出现是否与该地区开展的林牧活动(与木材生产相关的养牛活动)有关。此外,我们还评估了巴顿氏菌感染与其他环境和宿主因素之间的关联。我们提出了令人信服的证据,证明巴顿氏菌感染率与植入森林和养牛之间存在显著的正相关。此外,我们还发现了一种与病原体 Bartonella rochalimaea 相关的巴顿氏菌基因型,可感染 A. azarae 和 Ox.这些发现表明,人为的土地使用变化,尤其是该地区林牧业的发展,可能会破坏巴顿氏菌的动态变化。
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引用次数: 0
Comprehensive Genomic Characterization of Antibiotic Resistance, Virulence, and Clonality in Salmonella Isolates from Wild Animals in Algeria. 阿尔及利亚野生动物沙门氏菌对抗生素的耐药性、毒性和克隆性的综合基因组特征。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2024-01-04 DOI: 10.1007/s10393-023-01670-7
Zahra Bellil, Sylvain Meyer, Valentin Tilloy, Assia Mairi, Olivier Barraud, Christophe De Champs, Abdelaziz Touati

This study investigated Salmonella spp. in wild animals in Algeria, focusing on their prevalence, serotypes, antibiotic resistance, and virulence profiles. From fecal samples collected between May 2021 and June 2022, 1.9% showed Salmonella shedding. The identified serotypes included S. Bredeney, S. Enteritidis, S. Altona, and S. Virchow. Except for S. Altona, all isolates were resistant to quinolones, with S. Bredeney strains, exhibiting multidrug resistance. Whole-genome sequencing revealed various resistance genes and mutations in gyrA or parC genes. Additionally, plasmids IncX1 and ColpVC were detected in several isolates. A comprehensive analysis identified 201 virulence genes. These findings contribute to understanding Salmonella in wild animal populations and their potential impact on public health.

本研究调查了阿尔及利亚野生动物中的沙门氏菌属,重点关注其流行率、血清型、抗生素耐药性和毒力特征。在 2021 年 5 月至 2022 年 6 月期间采集的粪便样本中,1.9% 的样本显示有沙门氏菌脱落。已确定的血清型包括 S. Bredeney、S. Enteritidis、S. Altona 和 S. Virchow。除阿尔托纳沙门氏菌外,所有分离菌株均对喹诺酮类药物具有耐药性,其中布雷德尼沙门氏菌菌株对多种药物具有耐药性。全基因组测序发现了各种耐药基因以及 gyrA 或 parC 基因的突变。此外,在几个分离株中检测到了质粒 IncX1 和 ColpVC。综合分析确定了 201 个毒力基因。这些发现有助于了解野生动物种群中的沙门氏菌及其对公共卫生的潜在影响。
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引用次数: 0
Collaborative Modeling of the Tick-Borne Disease Social-Ecological System: A Conceptual Framework. 蜱传疾病社会生态系统的协作建模:概念框架。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-12-01 Epub Date: 2024-01-12 DOI: 10.1007/s10393-023-01669-0
Andrés M Urcuqui-Bustamante, Jessica E Leahy, Carly Sponarski, Allison M Gardner

Hard-bodied ticks have become a major concern in temperate regions because they transmit a variety of pathogens of medical significance. Ticks and pathogens interact with hosts in a complex social-ecological system (SES) that influences human exposure to tick-borne diseases (TBD). We argue that addressing the urgent public health threat posed by TBD requires an understanding of the integrated processes in the forest ecosystem that influence tick density and infection prevalence, transmission among ticks, animal hosts, and ultimately disease prevalence in humans. We argue that collaborative modeling of the human-tick SES is required to understand the system dynamics as well as move science toward policy action. Recent studies in human health have shown the importance of stakeholder participation in understanding the factors that contribute to human exposure to zoonotic diseases. We discuss how collaborative modeling can be applied to understand the impacts of forest management practices on ticks and TBD. We discuss the potential of collaborative modeling for encouraging participation of diverse stakeholders in discussing the implications of managing forest ticks in the absence of large-scale control policy.

在温带地区,硬体蜱已成为人们关注的一个主要问题,因为它们传播各种具有医学意义的病原体。蜱虫和病原体在一个复杂的社会生态系统(SES)中与宿主相互作用,影响人类对蜱传疾病(TBD)的接触。我们认为,要解决蜱传疾病对公共健康造成的紧迫威胁,就必须了解森林生态系统中影响蜱虫密度和感染率、蜱虫之间传播、动物宿主以及最终影响人类疾病流行的综合过程。我们认为,需要对人类-蜱虫 SES 进行合作建模,以了解系统动态,并将科学推向政策行动。最近的人类健康研究表明,利益相关者的参与对于了解导致人类接触人畜共患病的因素非常重要。我们讨论了如何通过合作建模来了解森林管理措施对蜱虫和结核病的影响。我们讨论了合作建模在鼓励不同利益相关者参与讨论在缺乏大规模控制政策的情况下管理森林蜱虫的影响方面的潜力。
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引用次数: 0
In This Issue. 在本期中。
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2023-11-23 DOI: 10.1007/s10393-023-01657-4
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引用次数: 0
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