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Explainable artificial intelligence and interpretable machine learning for agricultural data analysis 农业数据分析中可解释的人工智能和可解释的机器学习
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.11.003
Masahiro Ryo

Artificial intelligence and machine learning have been increasingly applied for prediction in agricultural science. However, many models are typically black boxes, meaning we cannot explain what the models learned from the data and the reasons behind predictions. To address this issue, I introduce an emerging subdomain of artificial intelligence, explainable artificial intelligence (XAI), and associated toolkits, interpretable machine learning. This study demonstrates the usefulness of several methods by applying them to an openly available dataset. The dataset includes the no-tillage effect on crop yield relative to conventional tillage and soil, climate, and management variables. Data analysis discovered that no-tillage management can increase maize crop yield where yield in conventional tillage is <5000 kg/ha and the maximum temperature is higher than 32°. These methods are useful to answer (i) which variables are important for prediction in regression/classification, (ii) which variable interactions are important for prediction, (iii) how important variables and their interactions are associated with the response variable, (iv) what are the reasons underlying a predicted value for a certain instance, and (v) whether different machine learning algorithms offer the same answer to these questions. I argue that the goodness of model fit is overly evaluated with model performance measures in the current practice, while these questions are unanswered. XAI and interpretable machine learning can enhance trust and explainability in AI.

人工智能和机器学习越来越多地应用于农业科学的预测。然而,许多模型都是典型的黑盒子,这意味着我们无法解释模型从数据中学到了什么,以及预测背后的原因。为了解决这个问题,我介绍了人工智能的一个新兴子领域,可解释的人工智能(XAI),以及相关的工具包,可解释的机器学习。本研究通过将几种方法应用于公开可用的数据集来证明它们的有用性。该数据集包括相对于常规耕作和土壤、气候和管理变量的免耕对作物产量的影响。数据分析发现,在常规耕作产量为5000 kg/ha、最高温度高于32℃的情况下,免耕管理可以提高玉米作物产量。这些方法有助于回答(i)哪些变量对回归/分类中的预测很重要,(ii)哪些变量相互作用对预测很重要,(iii)变量及其相互作用与响应变量的关联有多重要,(iv)某个实例的预测值背后的原因是什么,以及(v)不同的机器学习算法是否为这些问题提供相同的答案。我认为,在目前的实践中,模型拟合的优度被过度地用模型性能度量来评估,而这些问题没有得到回答。XAI和可解释性机器学习可以增强AI中的信任和可解释性。
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引用次数: 0
Disease detection, severity prediction, and crop loss estimation in MaizeCrop using deep learning 基于深度学习的玉米作物病害检测、严重程度预测和作物损失估计
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.11.002
Nidhi Kundu , Geeta Rani , Vijaypal Singh Dhaka , Kalpit Gupta , Siddaiah Chandra Nayaka , Eugenio Vocaturo , Ester Zumpano

The increasing gap between the demand and productivity of maize crop is a point of concern for the food industry, and farmers. Its' susceptibility to diseases such as Turcicum Leaf Blight, and Rust is a major cause for reducing its production. Manual detection, and classification of these diseases, calculation of disease severity, and crop loss estimation is a time-consuming task. Also, it requires expertise in disease detection. Thus, there is a need to find an alternative for automatic disease detection, severity prediction, and crop loss estimation. The promising results of machine learning, and deep learning algorithms in pattern recognition, object detection, and data analysis motivate researchers to employ these techniques for disease detection, classification, and crop loss estimation in maize crop. The research works available in literature, have proven their potential in automatic disease detection using machine learning, and deep learning models. But, there is a lack none of these works a reliable and real-life labelled dataset for training these models. Also, none of the existing works focus on severity prediction, and crop loss estimation. The authors in this manuscript collect the real-life dataset labelled by plant pathologists. They propose a deep learning-based framework for pre-processing of dataset, automatic disease detection, severity prediction, and crop loss estimation. It uses the K-Means clustering algorithm for extracting the region of interest. Next, they employ the customized deep learning model ‘MaizeNet’ for disease detection, severity prediction, and crop loss estimation. The model reports the highest accuracy of 98.50%. Also, the authors perform the feature visualization using the Grad-CAM. Now, the proposed model is integrated with a web application to provide a user-friendly interface. The efficacy of the model in extracting the relevant features, a smaller number of parameters, low training time, high accuracy favors its importance as an assisting tool for plant pathology experts.The copyright for the associated web application ‘Maize-Disease-Detector’ is filed with diary number: 17006/2021-CO/SW.

玉米作物的需求和产量之间日益扩大的差距是食品工业和农民关注的一个问题。其对黄枯病和锈病的易感性是其减产的主要原因。人工检测、分类这些疾病、计算疾病严重程度和估计作物损失是一项耗时的任务。此外,它还需要疾病检测方面的专业知识。因此,有必要找到一种替代方法来自动检测疾病、预测严重程度和估计作物损失。机器学习和深度学习算法在模式识别、目标检测和数据分析方面的有希望的结果促使研究人员将这些技术用于玉米作物的疾病检测、分类和作物损失估计。文献中的研究工作已经证明了它们在使用机器学习和深度学习模型进行自动疾病检测方面的潜力。但是,这些工作都缺乏一个可靠的和现实生活中的标记数据集来训练这些模型。此外,现有的研究也没有关注严重程度预测和作物损失估计。本文作者收集了植物病理学家标记的真实数据集。他们提出了一个基于深度学习的框架,用于数据集预处理、自动疾病检测、严重程度预测和作物损失估计。它使用K-Means聚类算法提取感兴趣的区域。接下来,他们采用定制的深度学习模型“MaizeNet”进行疾病检测、严重程度预测和作物损失估计。该模型报告的最高准确率为98.50%。此外,作者还利用Grad-CAM进行了特征可视化。现在,建议的模型与web应用程序集成,以提供用户友好的界面。该模型提取相关特征的效率高,参数数量少,训练时间短,准确率高,是植物病理学专家的辅助工具。相关的网络应用程序“玉米疾病检测器”的版权归档日记号:17006/2021-CO/SW。
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引用次数: 6
A study on deep learning algorithm performance on weed and crop species identification under different image background 不同图像背景下深度学习算法在杂草和作物种类识别中的性能研究
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.11.001
Sunil G C , Cengiz Koparan , Mohammed Raju Ahmed , Yu Zhang , Kirk Howatt , Xin Sun

Weed identification is fundamental toward developing a deep learning-based weed control system. Deep learning algorithms assist to build a weed detection model by using weed and crop images. The dynamic environmental conditions such as ambient lighting, moving cameras, or varying image backgrounds could affect the performance of deep learning algorithms. There are limited studies on how the different image backgrounds would impact the deep learning algorithms for weed identification. The objective of this research was to test deep learning weed identification model performance in images with potting mix (non-uniform) and black pebbled (uniform) backgrounds interchangeably. The weed and crop images were acquired by four canon digital cameras in the greenhouse with both uniform and non-uniform background conditions. A Convolutional Neural Network (CNN), Visual Group Geometry (VGG16), and Residual Network (ResNet50) deep learning architectures were used to build weed classification models. The model built from uniform background images was tested on images with a non-uniform background, as well as model built from non-uniform background images was tested on images with uniform background. Results showed that the VGG16 and ResNet50 models built from non-uniform background images were evaluated on the uniform background, achieving models' performance with an average f1-score of 82.75% and 75%, respectively. Conversely, the VGG16 and ResNet50 models built from uniform background images were evaluated on the non-uniform background images, achieving models' performance with an average f1-score of 77.5% and 68.4% respectively. Both the VGG16 and ResNet50 models' performances were improved with average f1-score values between 92% and 99% when both uniform and non-uniform background images were used to build the model. It appears that the model performances are reduced when they are tested with images that have different object background than the ones used for building the model.

杂草识别是开发基于深度学习的杂草控制系统的基础。深度学习算法通过使用杂草和作物图像来帮助建立杂草检测模型。动态环境条件,如环境照明、移动的摄像机或变化的图像背景,可能会影响深度学习算法的性能。不同图像背景对杂草识别深度学习算法的影响研究有限。本研究的目的是测试深度学习杂草识别模型在盆栽混合(非均匀)和黑卵石(均匀)背景可互换的图像中的性能。在均匀和非均匀背景条件下,利用4台佳能数码相机采集温室内杂草和作物图像。使用卷积神经网络(CNN)、视觉组几何(VGG16)和残差网络(ResNet50)深度学习架构构建杂草分类模型。将均匀背景图像构建的模型在非均匀背景图像上进行测试,将非均匀背景图像构建的模型在均匀背景图像上进行测试。结果表明,基于非均匀背景图像构建的VGG16和ResNet50模型在均匀背景下进行了评估,模型的平均f1得分分别为82.75%和75%。相反,在非均匀背景图像上对均匀背景图像构建的VGG16和ResNet50模型进行评估,模型的平均f1得分分别为77.5%和68.4%。在使用均匀和非均匀背景图像构建模型时,VGG16和ResNet50模型的性能都得到了提高,平均f1得分值在92%到99%之间。当使用与用于构建模型的图像具有不同对象背景的图像进行测试时,模型的性能似乎会降低。
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引用次数: 1
Examining the interplay between artificial intelligence and the agri-food industry 研究人工智能与农业食品行业之间的相互作用
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.08.002
Abderahman Rejeb , Karim Rejeb , Suhaiza Zailani , John G. Keogh , Andrea Appolloni

Artificial intelligence (AI) has advanced at an astounding rate and transformed numerous economic sectors. Nevertheless, a comprehensive understanding of how AI can improve the agri-food industry is lacking. In addition, there is a notable dearth of research on AI that investigates the influence of AI on agri-food resources and educates practitioners on the significance of knowledge-based and smart agriculture. We utilised bibliometric analysis to investigate the present state of the art and emerging trends in the relationship between AI and the agri-food industry. The research identified three distinct growth phases and the most prevalent AI strategies in the industry. In addition, we analysed key trends and offered researchers and practitioners insightful recommendations for future research. Using resource-based view (RBV) as the theoretical lens, this study established a framework emphasising the long-term effects of AI on various agri-food resources and proposed several research propositions. In addition, AI-related obstacles have been identified and categorised into four major categories. Lastly, the originality of the article lies in its numerous research suggestions and recommendations for advancing the AI field in the agri-food industry.

人工智能(AI)以惊人的速度发展,并改变了许多经济部门。然而,对于人工智能如何改善农业食品行业,目前还缺乏全面的了解。此外,关于人工智能对农业食品资源的影响以及教育实践者关于知识农业和智慧农业的重要性的研究也明显缺乏。我们利用文献计量学分析来调查人工智能与农业食品工业之间关系的现状和新兴趋势。该研究确定了三个不同的增长阶段和行业中最流行的人工智能战略。此外,我们还分析了主要趋势,并为研究人员和从业者提供了有见地的建议。本研究以资源基础观(resource-based view, RBV)为理论视角,构建了一个强调人工智能对各种农业食品资源的长期影响的框架,并提出了若干研究命题。此外,人工智能相关的障碍已被确定并分为四大类。最后,文章的独创性在于其众多的研究建议和建议,以推进农业食品行业的人工智能领域。
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引用次数: 19
Optimization techniques in deep convolutional neuronal networks applied to olive diseases classification 深度卷积神经网络优化技术在橄榄病害分类中的应用
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.06.001
El Mehdi Raouhi , Mohamed Lachgar , Hamid Hrimech , Ali Kartit

Plants diseases have a detrimental effect on the quality but also on the quantity of agricultural production. However, the prediction of these diseases is proving the effect on crop quality and on reducing the risk of production losses. Indeed, the detection of plant diseases -either with a naked eye or using traditional methods- is largely a cumbersome process in terms of time, availability and results with a high-risk error. The present work introduces a depth study of various CNN architectures with different optimization algorithms carried out for olive disease detection using classification techniques that recommend the best model for constructing an effective disease detector. This study presents a dataset of 5571 olive leaf images collected manually on real conditions from different regions of Morocco, that also includes healthy class to detect olive diseases. Further, one of the goals of this research was to study the correlation effects between CNN architectures and optimization algorithms evaluated by the accuracy and other performance metrics. The highest rate in trained models was 100 %, while the highest rate in experiments without data augmentation was 92,59 %. Another subject of this study is the influence of the optimization algorithms on neuronal network performance. As a result of the experiments carried out, the MobileNet architecture using Rmsprop algorithms outperformed the others combinations in terms of performance and efficiency of disease detector.

植物病害不仅影响农业生产的质量,而且影响农业生产的数量。然而,对这些病害的预测正在证明对作物品质的影响和对减少生产损失风险的影响。事实上,植物病害的检测——无论是用肉眼还是使用传统方法——在时间、可用性和结果方面基本上是一个繁琐的过程,而且存在高风险的错误。目前的工作介绍了对各种CNN架构的深入研究,这些架构采用不同的优化算法进行橄榄疾病检测,使用分类技术推荐构建有效疾病检测器的最佳模型。本研究展示了在摩洛哥不同地区真实条件下手动收集的5571张橄榄叶图像的数据集,其中还包括用于检测橄榄疾病的健康类。此外,本研究的目标之一是研究CNN架构与通过准确性和其他性能指标评估的优化算法之间的相关效应。经过训练的模型的最高识别率为100%,而未经数据增强的实验的最高识别率为92.59%。本研究的另一个主题是优化算法对神经网络性能的影响。实验结果表明,使用Rmsprop算法的MobileNet架构在疾病检测器的性能和效率方面优于其他组合。
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引用次数: 17
Few-shot learning for biotic stress classification of coffee leaves 咖啡叶生物胁迫分类的少射学习
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.04.001
Lucas M. Tassis , Renato A. Krohling

In the last few years, deep neural networks have achieved promising results in several fields. However, one of the main limitations of these methods is the need for large-scale datasets to properly generalize. Few-shot learning methods emerged as an attempt to solve this shortcoming. Among the few-shot learning methods, there is a class of methods known as embedding learning or metric learning. These methods tackle the classification problem by learning to compare, needing fewer training data. One of the main problems in plant diseases and pests recognition is the lack of large public datasets available. Due to this difficulty, the field emerges as an intriguing application to evaluate the few-shot learning methods. The field is also relevant due to the social and economic importance of agriculture in several countries. In this work, datasets consisting of biotic stresses in coffee leaves are used as a case study to evaluate the performance of few-shot learning in classification and severity estimation tasks. We achieved competitive results compared with the ones reported in the literature in the classification task, with accuracy values close to 96%. Furthermore, we achieved superior results in the severity estimation task, obtaining 6.74% greater accuracy than the baseline.

在过去的几年里,深度神经网络在几个领域取得了可喜的成果。然而,这些方法的主要限制之一是需要大规模的数据集来进行适当的泛化。为了解决这一缺陷,出现了一种尝试。在少量的学习方法中,有一类方法被称为嵌入学习或度量学习。这些方法通过学习比较来解决分类问题,需要更少的训练数据。植物病虫害识别的主要问题之一是缺乏大型公共数据集。由于这一困难,该领域出现了一个有趣的应用来评估少镜头学习方法。由于农业在一些国家的社会和经济重要性,该领域也具有相关性。在这项工作中,由咖啡叶中的生物胁迫组成的数据集被用作案例研究,以评估在分类和严重性估计任务中的少射学习的性能。在分类任务中,我们取得了与文献报道相比具有竞争力的结果,准确率接近96%。此外,我们在严重性估计任务中取得了更好的结果,获得了比基线高6.74%的准确率。
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引用次数: 9
Deep convolutional neural network for damaged vegetation segmentation from RGB images based on virtual NIR-channel estimation 基于虚拟nir通道估计的RGB图像损伤植被分割深度卷积神经网络
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.09.004
Artzai Picon , Arantza Bereciartua-Perez , Itziar Eguskiza , Javier Romero-Rodriguez , Carlos Javier Jimenez-Ruiz , Till Eggers , Christian Klukas , Ramon Navarra-Mestre

Performing accurate and automated semantic segmentation of vegetation is a first algorithmic step towards more complex models that can extract accurate biological information on crop health, weed presence and phenological state, among others. Traditionally, models based on normalized difference vegetation index (NDVI), near infrared channel (NIR) or RGB have been a good indicator of vegetation presence. However, these methods are not suitable for accurately segmenting vegetation showing damage, which precludes their use for downstream phenotyping algorithms. In this paper, we propose a comprehensive method for robust vegetation segmentation in RGB images that can cope with damaged vegetation. The method consists of a first regression convolutional neural network to estimate a virtual NIR channel from an RGB image. Second, we compute two newly proposed vegetation indices from this estimated virtual NIR: the infrared-dark channel subtraction (IDCS) and infrared-dark channel ratio (IDCR) indices. Finally, both the RGB image and the estimated indices are fed into a semantic segmentation deep convolutional neural network to train a model to segment vegetation regardless of damage or condition. The model was tested on 84 plots containing thirteen vegetation species showing different degrees of damage and acquired over 28 days. The results show that the best segmentation is obtained when the input image is augmented with the proposed virtual NIR channel (F1=0.94) and with the proposed IDCR and IDCS vegetation indices (F1=0.95) derived from the estimated NIR channel, while the use of only the image or RGB indices lead to inferior performance (RGB(F1=0.90) NIR(F1=0.82) or NDVI(F1=0.89) channel). The proposed method provides an end-to-end land cover map segmentation method directly from simple RGB images and has been successfully validated in real field conditions.

对植被进行准确和自动化的语义分割是迈向更复杂模型的第一步,这些模型可以提取作物健康、杂草存在和物候状态等准确的生物信息。传统上,基于归一化植被指数(NDVI)、近红外通道(NIR)或RGB的模型是植被存在的良好指标。然而,这些方法不适合准确分割显示损伤的植被,这妨碍了它们用于下游表型算法。在本文中,我们提出了一种综合的RGB图像鲁棒植被分割方法,该方法可以处理受损植被。该方法采用一阶回归卷积神经网络从RGB图像中估计虚拟近红外通道。其次,我们计算了两个新提出的植被指数:红外-暗通道减法(IDCS)和红外-暗通道比(IDCR)指数。最后,将RGB图像和估计的指标输入到语义分割深度卷积神经网络中,训练一个模型来分割植被,而不考虑损伤或状况。该模型在84个样地上进行了28天的试验,这些样地包含13种不同程度的植被。结果表明:采用虚拟近红外通道(F1=0.94)和基于估计近红外通道的IDCR和IDCS植被指数(F1=0.95)增强输入图像可获得最佳分割效果,而仅使用图像或RGB指数会导致较差的分割效果(RGB(F1=0.90) NIR(F1=0.82)或NDVI(F1=0.89)通道)。该方法直接从简单的RGB图像中提供端到端的土地覆盖图分割方法,并在实际野外条件下成功验证。
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引用次数: 1
Durum wheat yield forecasting using machine learning 利用机器学习预测硬粒小麦产量
Q1 Computer Science Pub Date : 2022-01-01 DOI: 10.1016/j.aiia.2022.09.003
Nabila Chergui

A reliable and accurate forecasting model for crop yields is crucial for effective decision-making in every agricultural sector. Machine learning approaches allow for building such predictive models, but the quality of predictions decreases if data is scarce. In this work, we proposed data-augmentation for wheat yield forecasting in the presence of small data sets of two distinct Provinces in Algeria. We first increased the dimension of each data set by adding more features, and then we augmented the size of the data by merging the two data sets. To assess the effectiveness of data-augmentation approaches, we conducted three sets of experiments based on three data sets: the primary data sets, data sets with additional features and the augmented data sets obtained by merging, using five regression models (Support Vector Regression, Random Forest, Extreme Learning Machine, Artificial Neural Network, Deep Neural Network). To evaluate the models, we used cross-validation; the results showed an overall increase in performance with the augmented data. DNN outperformed the other models for the first Province with a Root Mean Square Error (RMSE) of 0.04 q/ha and R_Squared (R2) of 0.96, whereas the Random Forest outperformed the other models for the second Province with RMSE of 0.05 q/ha. The data-augmentation approach proposed in this study showed encouraging results.

一个可靠和准确的作物产量预测模型对于每个农业部门的有效决策至关重要。机器学习方法允许建立这样的预测模型,但如果数据稀缺,预测的质量会下降。在这项工作中,我们建议在阿尔及利亚两个不同省份的小数据集存在的情况下,对小麦产量预测进行数据增强。我们首先通过添加更多的特征来增加每个数据集的维度,然后通过合并两个数据集来增加数据的大小。为了评估数据增强方法的有效性,我们使用五种回归模型(支持向量回归、随机森林、极限学习机、人工神经网络、深度神经网络),基于三个数据集进行了三组实验:原始数据集、附加特征数据集和合并后的增强数据集。为了评估模型,我们使用交叉验证;结果显示,随着数据的增强,性能总体上有所提高。DNN在第一个省的表现优于其他模型,RMSE为0.04 q/ha, R_Squared (R2)为0.96,而随机森林在第二个省的表现优于其他模型,RMSE为0.05 q/ha。本研究提出的数据增强方法取得了令人鼓舞的结果。
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引用次数: 5
Important Libraries for AI 重要的AI库
Q1 Computer Science Pub Date : 2021-09-28 DOI: 10.1201/9781003245759-10
Rajesh Singh, A. Gehlot, M. Prajapat, Bhupendra Singh
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引用次数: 0
Learning Python for Artificial Intelligence 为人工智能学习Python
Q1 Computer Science Pub Date : 2021-09-28 DOI: 10.1201/9781003245759-3
Rajesh Singh, A. Gehlot, M. Prajapat, Bhupendra Singh
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引用次数: 0
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Artificial Intelligence in Agriculture
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