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Feature aggregation for nutrient deficiency identification in chili based on machine learning 基于机器学习的辣椒营养缺乏识别特征聚合
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-06-01 DOI: 10.1016/j.aiia.2023.04.001
Deffa Rahadiyan , Sri Hartati , Wahyono , Andri Prima Nugroho

Macronutrient deficiency inhibits the growth and development of chili plants. One of the non-destructive methods that plays a role in processing plant image data based on specific characteristics is computer vision. This study uses 5166 image data after augmentation process for six plant health conditions. But the analysis of one feature cannot represent plant health condition. Therefore, a careful combination of features is required. This study combines three types of features with HSV and RGB for color, GLCM and LBP for texture, and Hu moments and centroid distance for shapes. Each feature and its combination are trained and tested using the same MLP architecture. The combination of RGB, GLCM, Hu moments, and Distance of centroid features results the best performance. In addition, this study compares the MLP architecture used with previous studies such as SVM, Random Forest Technique, Naive Bayes, and CNN. CNN produced the best performance, followed by SVM and MLP, with accuracy reaching 97.76%, 90.55% and 89.70%, respectively. Although MLP has lower accuracy than CNN, the model for identifying plant health conditions has a reasonably good success rate to be applied in a simple agricultural environment.

大量营养素缺乏会抑制辣椒植物的生长发育。在基于特定特征处理植物图像数据方面发挥作用的非破坏性方法之一是计算机视觉。这项研究使用了5166个植物健康状况增强过程后的图像数据。但是,对一个特征的分析不能代表植物的健康状况。因此,需要对功能进行仔细组合。这项研究结合了三种类型的特征:颜色的HSV和RGB,纹理的GLCM和LBP,形状的Hu矩和质心距离。每个特征及其组合都使用相同的MLP体系结构进行训练和测试。RGB、GLCM、Hu矩和质心距离特征的组合产生最佳性能。此外,本研究将MLP架构与先前的研究(如SVM、随机森林技术、朴素贝叶斯和CNN)进行了比较。CNN表现最好,其次是SVM和MLP,准确率分别达到97.76%、90.55%和89.70%。尽管MLP的准确性低于CNN,但用于识别植物健康状况的模型在简单的农业环境中具有相当好的成功率。
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引用次数: 1
GxENet: Novel fully connected neural network based approaches to incorporate GxE for predicting wheat yield GxENet:基于全连接神经网络的小麦产量预测方法
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-06-01 DOI: 10.1016/j.aiia.2023.05.001
Sheikh Jubair , Olivier Tremblay-Savard , Mike Domaratzki

The expression of quantitative traits of a line of a crop depends on its genetics, the environment where it is sown and the interaction between the genetic information and the environment known as GxE. Thus to maximize food production, new varieties are developed by selecting superior lines of seeds suitable for a specific environment. Genomic selection is a computational technique for developing a new variety that uses whole genome molecular markers to identify top lines of a crop. A large number of statistical and machine learning models are employed for single environment trials, where it is assumed that the environment does not have any effect on the quantitative traits. However, it is essential to consider both genomic and environmental data to develop a new variety, as these strong assumptions may lead to failing to select top lines for an environment. Here we devised three novel deep learning frameworks incorporating GxE within the deep learning model and predicted line-specific yield for an environment. In the process, we also developed a new technique for identifying environment-specific markers that can be useful in many applications of environment-specific genomic selection. The result demonstrates that our best framework obtains 1.75 to 1.95 times better correlation coefficients than other deep learning models that incorporate environmental data depending on the test scenario. Furthermore, the feature importance analysis shows that environmental information, followed by genomic information, is the driving factor in predicting environment-specific yield for a line. We also demonstrate a way to extend our framework for new data types, such as text or soil data. The extended model also shows the potential to be useful in genomic selection.

作物品系数量性状的表达取决于其遗传、播种环境以及遗传信息与GxE环境之间的相互作用。因此,为了最大限度地提高粮食产量,通过选择适合特定环境的优良种子系来开发新品种。基因组选择是一种开发新品种的计算技术,该技术使用全基因组分子标记来识别作物的顶线。大量的统计和机器学习模型被用于单一环境试验,其中假设环境对数量性状没有任何影响。然而,开发新品种必须同时考虑基因组和环境数据,因为这些强有力的假设可能会导致无法选择环境的顶线。在这里,我们设计了三种新的深度学习框架,将GxE纳入深度学习模型中,并预测了环境的特定行产量。在这个过程中,我们还开发了一种识别环境特异性标记的新技术,该技术可用于环境特异性基因组选择的许多应用。结果表明,我们的最佳框架获得的相关系数是其他深度学习模型的1.75至1.95倍,这些模型根据测试场景结合了环境数据。此外,特征重要性分析表明,环境信息和基因组信息是预测品系环境特异性产量的驱动因素。我们还展示了一种将我们的框架扩展到新数据类型的方法,例如文本或土壤数据。扩展模型也显示了在基因组选择中有用的潜力。
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引用次数: 0
A deep learning method for monitoring spatial distribution of cage-free hens 一种监测无笼母鸡空间分布的深度学习方法
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-06-01 DOI: 10.1016/j.aiia.2023.03.003
Xiao Yang, Ramesh Bist, Sachin Subedi, Lilong Chai

The spatial distribution of laying hens in cage-free houses is an indicator of flock's health and welfare. While larger space allows chickens to perform more natural behaviors such as dustbathing, foraging, and perching in cage-free houses, an inherent challenge is evaluating chickens' locomotion and spatial distribution (e.g., real-time birds' number on perches or in nesting boxes). Manual inspection of hen's spatial distribution requires closer observation, which is labor intensive, time consuming, subject to human errors, and stress causing on birds. Therefore, an automated monitoring system is required to track the spatial distribution of hens for early detection of animal welfare and health concerns. In this study, a non–intrusive machine vision method was developed to monitor hens' spatial distribution automatically. An improved You Only Look Once version 5 (YOLOv5) method was developed and trained to test hens' distribution in research cage-free facilities (e.g., 200 hens per house). The spatial distribution of hens the system monitored includes perch zone, feeding zone, drinking zone, and nesting zone. The dataset contains a whole growth period of chickens from day 1 to day 252. About 3000 images were extracted randomly from recorded videos for model training, validation, and testing. About 2400 images were used for training and 600 images for testing, respectively. Results show that the accuracy of the new model were 87–94% for tracking distribution in different zones for different ages of hens/pullets. Birds' age affected the performance of the model as younger birds had smaller body size and were hard to be detected due to blackness or occultation by equipment. The performance of the model was 0.891 and 0.942 for baby chicks (≤10 days old) and older birds (> 10 days) in detecting perching behaviors; 0.874 and 0.932 in detecting feeding/drinking behaviors. Miss detection happened when the flock density was high (>18 birds/m2) and chicken body was occluded by other facilities (e.g., nest boxes, feeders, and perches). Further studies such as chicken behavior identification works in commercial housing system should be combined with the model to reach an automatic detection system.

无笼舍蛋鸡的空间分布是鸡群健康和福利的一个指标。虽然更大的空间可以让鸡进行更自然的行为,如洗澡、觅食和在无笼的房子里栖息,但一个固有的挑战是评估鸡的运动和空间分布(例如,实时鸟类在栖息处或巢箱中的数量)。人工检查母鸡的空间分布需要更仔细的观察,这是劳动密集型的,耗时,容易出现人为错误,并给鸟类带来压力。因此,需要一个自动监测系统来跟踪母鸡的空间分布,以便早期发现动物福利和健康问题。本研究开发了一种非侵入式机器视觉方法来自动监测母鸡的空间分布。开发并训练了一种改进的You Only Look Once version 5(YOLOv5)方法,以测试母鸡在研究无笼设施中的分布情况(例如,每家200只母鸡)。系统监测的母鸡空间分布包括栖息区、饲养区、饮水区和筑巢区。该数据集包含从第1天到第252天的鸡的整个生长期。从录制的视频中随机提取了约3000张图像,用于模型训练、验证和测试。分别使用约2400张图像进行训练和600张图像进行测试。结果表明,新模型在跟踪不同年龄母鸡/小母鸡在不同区域的分布时,准确率为87–94%。鸟类的年龄影响了模型的性能,因为年轻的鸟类体型较小,由于黑暗或设备的遮蔽,很难被探测到。该模型对幼鸟(≤10天)和年长鸟(>10天)栖息行为的检测性能分别为0.891和0.942;0.874和0.932。当鸡群密度高(>18只/平方米)并且鸡体被其他设施(例如巢箱、喂食器和栖息处)遮挡时,会发生漏检。进一步的研究,如商品房系统中鸡的行为识别工作,应与模型相结合,以达到自动检测系统的目的。
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引用次数: 11
How artificial intelligence uses to achieve the agriculture sustainability: Systematic review 人工智能如何实现农业可持续发展:系统综述
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-06-01 DOI: 10.1016/j.aiia.2023.04.002
Vilani Sachithra, L.D.C.S. Subhashini

The generation of food production that meets the rising demand for food and ecosystem security is a big challenge. With the development of Artificial Intelligence (AI) models, there is a growing need to use them to achieve sustainable agriculture. The continuous enhancement of AI in agriculture, researchers have proposed many models in agriculture functions such as prediction,weed control, resource management, advance care of crops, and so on. This article evaluates on a systematic review of AI models in agriculture functions. It also reviews how AI models are used in identified sustainable objectives. Through this extensive review, this paper discusses considerations and limitations for building the next generation of sustainable agriculture using AI.

满足日益增长的粮食需求和生态系统安全的粮食生产是一个巨大的挑战。随着人工智能(AI)模型的发展,人们越来越需要使用它们来实现可持续农业。随着人工智能在农业中的不断增强,研究人员提出了许多农业功能模型,如预测、杂草控制、资源管理、作物提前照料等。它还审查了人工智能模型如何用于确定的可持续目标。通过这篇广泛的综述,本文讨论了利用人工智能构建下一代可持续农业的考虑因素和局限性。
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引用次数: 4
Fruit ripeness classification: A survey 水果成熟度分类调查
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2023.02.004
Matteo Rizzo , Matteo Marcuzzo , Alessandro Zangari , Andrea Gasparetto , Andrea Albarelli

Fruit is a key crop in worldwide agriculture feeding millions of people. The standard supply chain of fruit products involves quality checks to guarantee freshness, taste, and, most of all, safety. An important factor that determines fruit quality is its stage of ripening. This is usually manually classified by field experts, making it a labor-intensive and error-prone process. Thus, there is an arising need for automation in fruit ripeness classification. Many automatic methods have been proposed that employ a variety of feature descriptors for the food item to be graded. Machine learning and deep learning techniques dominate the top-performing methods. Furthermore, deep learning can operate on raw data and thus relieve the users from having to compute complex engineered features, which are often crop-specific. In this survey, we review the latest methods proposed in the literature to automatize fruit ripeness classification, highlighting the most common feature descriptors they operate on.

水果是全球农业的关键作物,养活了数百万人。水果产品的标准供应链包括质量检查,以确保新鲜度、口感,最重要的是安全性。决定果实品质的一个重要因素是果实的成熟阶段。这通常是由现场专家手动分类的,这是一个劳动密集且容易出错的过程。因此,对水果成熟度分类自动化的需求日益增加。已经提出了许多自动方法,这些方法对要分级的食物项目使用各种特征描述符。机器学习和深度学习技术是表现最好的方法。此外,深度学习可以对原始数据进行操作,从而使用户不必计算复杂的工程特征,而这些特征通常是特定于作物的。在这项调查中,我们回顾了文献中提出的自动化水果成熟度分类的最新方法,重点介绍了它们所使用的最常见的特征描述符。
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引用次数: 0
Lightweight convolutional neural network models for semantic segmentation of in-field cotton bolls 基于轻量级卷积神经网络模型的大田棉铃语义分割
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2023.03.001
Naseeb Singh, V. Tewari, P. Biswas, L. Dhruw
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引用次数: 1
Deep learning for the detection of semantic features in tree X-ray CT scans 基于深度学习的树状x射线CT扫描语义特征检测
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2022.12.001
Salim Khazem , Antoine Richard , Jeremy Fix , Cédric Pradalier

According to the industry, the value of wood logs is heavily influenced by their internal structure, particularly the distribution of knots within the trees. Nowadays, CT scanners combined with classical computer vision approach are the most common tool for obtaining reliable and accurate images of the interior structure of trees. Knowing where the tree semantic features, especially knots, contours and centers are within a tree could improve the efficiency of the overall tree industry by minimizing waste and enhancing the quality of wood-log by-products. However, this requires to automatically process the CT-scanner images so as to extract the different elements such as tree centerline, knot localization and log contour, in a robust and efficient manner. In this paper, we propose an effective methodology based on deep learning for performing these different tasks by processing CT-scanner images with deep convolutional neural networks. To meet this objective, three end-to-end trainable pipelines are proposed. The first pipeline is focused on centers detection using CNNs architecture with a regression head, the second and the third one address contour estimation and knot detection as a binary segmentation task based on an Encoder-Decoder architecture. The different architectures are tested on several tree species. With these experiments, we demonstrate that our approaches can be used to extract the different elements of trees in a precise manner while preserving good performances of robustness. The main objective was to demonstrate that methods based on deep learning might be used and have a relevant potential for segmentation and regression on CT-scans of tree trunks.

根据该行业的说法,原木的价值在很大程度上受到其内部结构的影响,尤其是树木内部结的分布。如今,CT扫描仪与经典的计算机视觉方法相结合是获得可靠和准确的树木内部结构图像的最常见工具。了解树木的语义特征,特别是节点、轮廓和中心在树中的位置,可以通过最大限度地减少浪费和提高原木副产品的质量来提高整个树木行业的效率。然而,这需要自动处理CT扫描仪图像,以便以稳健和高效的方式提取不同的元素,如树中心线、结定位和对数轮廓。在本文中,我们提出了一种基于深度学习的有效方法,通过使用深度卷积神经网络处理CT扫描仪图像来执行这些不同的任务。为了实现这一目标,提出了三个端到端可训练的管道。第一个流水线专注于使用具有回归头的CNNs架构的中心检测,第二个和第三个流水线侧重于将地址轮廓估计和结检测作为基于编码器-解码器架构的二进制分割任务。不同的结构在几种树种上进行了测试。通过这些实验,我们证明了我们的方法可以用于以精确的方式提取树的不同元素,同时保持良好的鲁棒性。主要目的是证明基于深度学习的方法可能被使用,并具有在树干CT扫描上进行分割和回归的相关潜力。
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引用次数: 2
Improving the non-destructive maturity classification model for durian fruit using near-infrared spectroscopy 利用近红外光谱技术改进榴莲果实成熟度无损分类模型
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2023.02.002
Sirirak Ditcharoen , Panmanas Sirisomboon , Khwantri Saengprachatanarug , Arthit Phuphaphud , Ronnarit Rittiron , Anupun Terdwongworakul , Chayuttapong Malai , Chirawan Saenphon , Lalita Panduangnate , Jetsada Posom

The maturity state of durian fruit is a key indicator of quality before trading. This research aims to improve the near-infrared (NIR) model for classifying the maturity stage of durian fruit using a completely non-destructive measurement. Both NIR spectrometers were investigated: the short wavelength NIR (SWNIR) ranging from 450 to 1000 nm and long wavelength NIR (LWNIR) ranging from 860 to 1750 nm. The samples collected for experimentation consisted of four stages: immaturity, prematurity, maturity, and ripe. Each fruit was scanned at the rind position on the main fertile lobe (header, middle, and tail) and stem. The classification models were developed using three supervised machine learning algorithms: linear discriminant analysis (LDA), support vector machine (SVM), and K-Nearest neighbours (KNN). The analysis results revealed that the use of durian rind spectra only obtained between 83.15% and 88.04% accuracy for the LWNIR spectrometer, while the SWNIR spectrometer provided 64.73 to 93.77% accuracy. The performance of model increases when developing with combination between rind and stem spectra. The LDA model developed using a combination of rind and stem spectra provided the greatest efficiency, exhibiting 97.28% and 100% accuracy for LWNIR and SWNIR spectrometers, respectively. The LDA model is therefore recommended for obtaining spectra from smoothing moving average (MA) + baseline of rind position and when used in combination with the MA + standard normal variance (SNV) of stem spectra. The NIR spectroscopy indicated high potential for non-destructive estimation of the durian maturity stage. This process could be used for quality control in the durian export industry to solve the problem of unripe durian being mixed with ripe fruit.

榴莲果实的成熟度是交易前品质的关键指标。本研究旨在改进近红外(NIR)模型,利用完全无损的测量方法对榴莲果实成熟期进行分类。研究了两种近红外光谱仪:450至1000nm的短波长近红外(SWNIR)和860至1750nm的长波长近红外(LWNIR)。为实验收集的样本包括四个阶段:未成熟、早熟、成熟和成熟。每种水果都在主要可育叶(头部、中部和尾部)和茎上的果皮位置进行扫描。分类模型是使用三种监督机器学习算法开发的:线性判别分析(LDA)、支持向量机(SVM)和K近邻(KNN)。分析结果表明,使用榴莲皮光谱的LWNIR光谱仪仅获得83.15%至88.04%的准确度,而SWNIR光谱仪提供64.73%至93.77%的准确度。当开发时,结合果皮和茎的光谱,模型的性能得到提高。使用果皮和茎部光谱组合开发的LDA模型提供了最大的效率,LWNIR和SWNIR光谱仪分别显示出97.28%和100%的准确度。因此,建议LDA模型用于从平滑移动平均值(MA)+果皮位置基线获得光谱,并与茎光谱的MA+标准正态方差(SNV)结合使用。近红外光谱表明榴莲成熟期的无损评估具有很高的潜力。该工艺可用于榴莲出口行业的质量控制,以解决未成熟榴莲与成熟水果混合的问题。
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引用次数: 0
A fuzzy risk assessment model used for assessing the introduction of African swine fever into Australia from overseas 用于评估非洲猪瘟从海外传入澳大利亚的模糊风险评估模型
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2023.02.001
Hongkun Liu , YongLin Ren , Huanhuan Chu , Hu Shan , Kok Wai Wong

African swine fever (ASF) is a contagious and lethal hemorrhagic disease with a high case fatality rate. Since 2007, ASF has been spreading into many countries, especially in Europe and Asia. Given that there is no effective vaccine and treatment to deal with ASF, prevention is an important way for a country to avoid the effects of the virus. Australia is currently ASF-free but the disease has been reported in many neighboring countries, such as Indonesia, Timor-Leste, and Papua New Guinea. Therefore, it is necessary for Australia to maintain hyper-vigilance to prevent the ASF introduction. In this paper, we propose the use of fuzzy concepts to establish a fuzzy risk assessment model to predict the ASF introduction risk in Australia. From the analysis, the international passengers (IP) and international import trade (IIT) are concluded as the two main ASF introduction factors based on transmission features and past research. From the established fuzzy risk assessment model based on the analysis of the 2019 and 2020 data, the risks of ASF introduction into Australia are considered to be low. The model further deduced that the Asian region was the major source of potential risks. Finally, in order to validate the effectiveness of the established fuzzy risk assessment model, the qualitative data from the Department for Environment, Food & Rural Affairs of the United Kingdom was used. From the validation results, it has shown that the results were consistent when the same data is adopted, and thus proved that the functionality of the established fuzzy risk assessment model for assessing the risk in Australia.

非洲猪瘟(ASF)是一种传染性和致死性出血性疾病,病死率高。自2007年以来,ASF已经蔓延到许多国家,尤其是欧洲和亚洲。鉴于没有有效的疫苗和治疗方法来应对ASF,预防是一个国家避免病毒影响的重要途径。澳大利亚目前没有ASF,但印尼、东帝汶和巴布亚新几内亚等许多邻国都报告了这种疾病。因此,澳大利亚有必要保持高度警惕,以防止ASF的引入。在本文中,我们建议使用模糊概念来建立模糊风险评估模型,以预测澳大利亚ASF引入的风险。通过分析,基于传播特征和以往的研究,得出国际旅客(IP)和国际进口贸易(IIT)是ASF的两个主要引入因素。根据对2019年和2020年数据的分析,建立了模糊风险评估模型,认为ASF引入澳大利亚的风险较低。该模型进一步推断,亚洲地区是潜在风险的主要来源。最后,为了验证所建立的模糊风险评估模型的有效性,环境、食品和药物管理部的定性数据;使用了联合王国的农村事务。从验证结果来看,当采用相同的数据时,结果是一致的,从而证明了所建立的模糊风险评估模型在评估澳大利亚风险方面的功能。
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引用次数: 1
t-SNE: A study on reducing the dimensionality of hyperspectral data for the regression problem of estimating oenological parameters t-SNE:葡萄酒参数估计回归问题的高光谱数据降维研究
Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2023-03-01 DOI: 10.1016/j.aiia.2023.02.003
Rui Silva , Pedro Melo-Pinto

In recent years there is a growing importance in using machine learning techniques to improve procedures in precision agriculture: in this work we perform a study on models capable of predicting oenological parameters from hyperspectral images of wine grape berries, a specially relevant topic to boost production tasks for winemakers. Specifically, we explore the capabilities of a novel technique mostly used for visualization, t-Distributed Stochastic Neighbor Embedding (t-SNE), for reducing the dimensionality of the highly complex hyperspectral data and compare its performance with Principal Component Analysis (PCA) method, which despite the introduction of many nonlinear dimensionality reduction techniques over the years, had achieved the best results for real-world data across several studies in literature. Additionally we explore the potential of Kernel t-SNE, an extension to the t-SNE method that allows for the usage of the technique in streaming data or online scenarios. Our results show that, in a direct comparison, t-SNE achieves better metrics than PCA for most of the data sets in this work and that the regressor (Support Vector Regression, SVR) performs better with the t-SNE reduced features as inputs, accomplishing better predictions with lower error rates. Comparing the results with current literature, our shallow learning model paired with t-SNE achieves either better or on par results than those reported, even competing with more advanced models that use deep learning techniques, which should propel the introduction of t-SNE in more studies that require dimensionality reduction.

近年来,使用机器学习技术来改进精准农业的程序变得越来越重要:在这项工作中,我们对能够从葡萄酒葡萄浆果的高光谱图像中预测酿酒参数的模型进行了研究,这是一个与提高酿酒师的生产任务特别相关的主题。具体而言,我们探索了一种主要用于可视化的新技术,t-分布式随机邻域嵌入(t-SNE),用于降低高度复杂的高光谱数据的维数的能力,并将其性能与主成分分析(PCA)方法进行了比较,尽管多年来引入了许多非线性降维技术,在文献中的几项研究中,获得了真实世界数据的最佳结果。此外,我们还探索了内核t-SNE的潜力,它是t-SNE方法的扩展,允许在流数据或在线场景中使用该技术。我们的结果表明,在直接比较中,对于本工作中的大多数数据集,t-SNE实现了比PCA更好的度量,并且回归器(支持向量回归,SVR)在将t-SNE减少的特征作为输入的情况下表现更好,以更低的错误率实现了更好的预测。将结果与当前文献进行比较,我们的浅层学习模型与t-SNE相结合,取得了比报道的更好或持平的结果,甚至与使用深度学习技术的更先进的模型相竞争,这将推动t-SNE在更多需要降维的研究中的引入。
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引用次数: 1
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Artificial Intelligence in Agriculture
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