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Organoid Models for Cancer Research 癌症研究的类器官模型
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055702
H. Clevers, D. Tuveson
Organoid cultures have emerged as powerful model systems accelerating discoveries in cellular and cancer biology. These three-dimensional cultures are amenable to diverse techniques, including high-throughput genome and transcriptome sequencing, as well as genetic and biochemical perturbation, making these models well suited to answer a variety of questions. Recently, organoids have been generated from diverse human cancers, including breast, colon, pancreas, prostate, bladder, and liver cancers, and studies involving these models are expanding our knowledge of the etiology and characteristics of these malignancies. Co-cultures of cancer organoids with non-neoplastic stromal cells enable investigation of the tumor microenvironment. In addition, recent studies have established that organoids have a place in personalized medicine approaches. Here, we describe the application of organoid technology to cancer discovery and treatment.
类器官培养已经成为强大的模型系统,加速了细胞和癌症生物学的发现。这些三维培养适用于各种技术,包括高通量基因组和转录组测序,以及遗传和生化扰动,使这些模型非常适合回答各种问题。最近,从多种人类癌症中产生了类器官,包括乳腺癌、结肠癌、胰腺癌、前列腺癌、膀胱癌和肝癌,涉及这些模型的研究正在扩大我们对这些恶性肿瘤的病因和特征的认识。肿瘤类器官与非肿瘤间质细胞的共培养使研究肿瘤微环境成为可能。此外,最近的研究已经确定,类器官在个性化医疗方法中占有一席之地。在这里,我们描述了类器官技术在癌症发现和治疗中的应用。
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引用次数: 42
Biology and Therapy of Dominant Fusion Oncoproteins Involving Transcription Factor and Chromatin Regulators in Sarcomas 肉瘤中涉及转录因子和染色质调节因子的显性融合癌蛋白的生物学和治疗
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055710
J. Perry, B. Seong, K. Stegmaier
A third of soft tissue sarcomas have been shown to carry recurrent, characteristic chromosomal translocations, many of which generate fusion proteins that act as dominant transcription factors or as chromatin regulators. With routine use of massively parallel sequencing and advances in technology for the study of epigenetics and protein complexes, the last decade has seen a marked advancement in the identification of novel fusions and in our understanding of the mechanisms by which they contribute to the malignant state. Moreover, with new approaches in chemistry, such as the strategy of targeted protein degradation, we are now better poised to address these previously intractable targets. In this review, we describe three of the most common fusion-driven sarcomas (Ewing sarcoma, alveolar rhabdomyosarcoma, and synovial sarcoma), mechanistic themes emerging across these diseases, and novel approaches to their targeting.
三分之一的软组织肉瘤已被证明携带复发性、特征性的染色体易位,其中许多产生融合蛋白,作为显性转录因子或染色质调节因子。随着大规模平行测序的常规使用以及表观遗传学和蛋白质复合物研究技术的进步,过去十年在鉴定新的融合体以及我们对它们导致恶性状态的机制的理解方面取得了显著进展。此外,随着化学中的新方法,如靶向蛋白质降解策略,我们现在可以更好地解决这些以前难以解决的目标。在这篇综述中,我们描述了三种最常见的融合驱动型肉瘤(尤文氏肉瘤、肺泡横纹肌肉瘤和滑膜肉瘤),这些疾病出现的机制主题,以及它们的靶向治疗的新方法。
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引用次数: 18
Taming the Heterogeneity of Aggressive Lymphomas for Precision Therapy 控制侵袭性淋巴瘤的异质性以进行精确治疗
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055734
R. Young, J. Phelan, A. Shaffer, George W. Wright, D. Huang, R. Schmitz, Calvin A. Johnson, T. Oellerich, W. Wilson, L. Staudt
Genomic analyses of diffuse large B cell lymphoma (DLBCL) are revealing the genetic and phenotypic heterogeneity of these aggressive lymphomas. In part, this heterogeneity reflects the existence of distinct genetic subtypes that acquire characteristic constellations of somatic genetic alterations to converge on the DLBCL phenotype. In parallel, functional genomic screens and proteomic analyses have identified multiprotein assemblies that coordinate oncogenic survival signaling in DLBCL. In this review, we merge these recent insights into a unified conceptual framework with implications for the design of precision medicine trials in DLBCL.
弥漫性大B细胞淋巴瘤(DLBCL)的基因组分析揭示了这些侵袭性淋巴瘤的遗传和表型异质性。在某种程度上,这种异质性反映了不同遗传亚型的存在,这些亚型获得了体细胞遗传改变的特征性星座,从而汇聚在DLBCL表型上。同时,功能基因组筛选和蛋白质组学分析已经确定了DLBCL中协调致癌生存信号的多蛋白组装体。在这篇综述中,我们将这些最新的见解合并到一个统一的概念框架中,对DLBCL中精确药物试验的设计具有启示。
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引用次数: 17
Cancer Immunotherapy: Beyond Checkpoint Blockade. 癌症免疫治疗:超越检查点封锁。
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-01 DOI: 10.1146/annurev-cancerbio-030518-055552
Michael Dougan, Glenn Dranoff, Stephanie K Dougan

Blocking antibodies to the immune checkpoint receptors or their ligands have revolutionized the treatment of diverse malignancies. Many tumors are recognized by adaptive immunity, but these adaptive responses can be inhibited by immunosuppressive mechanisms within the tumor, often through pathways outside of the currently targeted checkpoints. For this reason, only a minority of cancer patients achieve durable responses to current immunotherapies. Multiple novel approaches strive to expand immunotherapy's reach. These may include targeting alternative immune checkpoints. However, many investigational strategies look beyond checkpoint blockade. These include cellular therapies to bypass endogenous immunity and efforts to stimulate new adaptive antitumor responses using vaccines, adjuvants, and combinations with cytotoxic therapy, as well as strategies to inhibit innate immune suppression and modulate metabolism within the tumor microenvironment. The challenge for immunotherapy going forward will be to select rational strategies for overcoming barriers to effective antitumor responses from the myriad possible targets.

阻断免疫检查点受体或其配体的抗体已经彻底改变了各种恶性肿瘤的治疗。许多肿瘤可被适应性免疫识别,但这些适应性反应可被肿瘤内的免疫抑制机制所抑制,通常通过当前靶向检查点之外的途径。由于这个原因,只有少数癌症患者对目前的免疫疗法有持久的反应。多种新方法努力扩大免疫治疗的范围。这些可能包括针对其他免疫检查点。然而,许多研究策略超越了检查点封锁。这些包括绕过内源性免疫的细胞疗法,以及使用疫苗、佐剂和细胞毒疗法联合刺激新的适应性抗肿瘤反应的努力,以及抑制先天免疫抑制和调节肿瘤微环境内代谢的策略。免疫治疗未来的挑战将是选择合理的策略来克服障碍,从无数可能的目标中获得有效的抗肿瘤反应。
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引用次数: 101
A Joint Odyssey into Cancer Genetics 共同探索癌症遗传学
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-01 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055543
S. Cory, Jerry M. Adams
The war on cancer that began some 40 years ago with the discovery of oncogenes is starting to be won. We feel fortunate to have contributed to several advances. Here we recall how molecular biology became our scientific passion, how we met from opposite ends of the earth, and how our 50-year odyssey has taken us from gene expression through immunogenetics to exploring the molecular basis of cancer and cell death. We describe the scientific discoveries that motivated us and remarkable scientists who influenced us. We sketch our studies that clarified the role of chromosome translocations in cancer and established the value of genetically engineered mouse models of tumorigenesis. Finally, we outline how our findings with many talented close colleagues on cell death regulation stimulated the development of remarkable new anticancer agents called BH3 mimetics, which are encouraging hope that many more malignancies will become controllable and even curable.
大约40年前随着致癌基因的发现而开始的抗癌战争正开始取得胜利。我们很幸运地为几项进步做出了贡献。在这里,我们回顾分子生物学如何成为我们的科学激情,我们如何从地球的两端相遇,以及我们50年的奥德赛如何将我们从基因表达到免疫遗传学探索癌症和细胞死亡的分子基础。我们描述激励我们的科学发现和影响我们的杰出科学家。我们概述了我们的研究,阐明了染色体易位在癌症中的作用,并建立了基因工程小鼠肿瘤发生模型的价值。最后,我们概述了我们与许多才华横溢的亲密同事在细胞死亡调控方面的发现如何刺激了称为BH3模拟物的非凡新型抗癌药物的发展,这给人们带来了希望,即更多的恶性肿瘤将被控制甚至治愈。
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引用次数: 4
MiT/TFE Family of Transcription Factors, Lysosomes, and Cancer. 转录因子、溶酶体和癌症的MiT/TFE家族。
IF 4.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-01 Epub Date: 2018-11-28 DOI: 10.1146/annurev-cancerbio-030518-055835
Rushika M Perera, Chiara Di Malta, Andrea Ballabio

Cancer cells have an increased demand for energy sources to support accelerated rates of growth. When nutrients become limiting, cancer cells may switch to nonconventional energy sources that are mobilized through nutrient scavenging pathways involving autophagy and the lysosome. Thus, several cancers are highly reliant on constitutive activation of these pathways to degrade and recycle cellular materials. Here, we focus on the MiT/TFE family of transcription factors, which control transcriptional programs for autophagy and lysosome biogenesis and have emerged as regulators of energy metabolism in cancer. These new findings complement earlier reports that chromosomal translocations and amplifications involving the MiT/TFE genes contribute to the etiology and pathophysiology of renal cell carcinoma, melanoma, and sarcoma, suggesting pleiotropic roles for these factors in a wider array of cancers. Understanding the interplay between the oncogenic and stress-adaptive roles of MiT/TFE factors could shed light on fundamental mechanisms of cellular homeostasis and point to new strategies for cancer treatment.

癌症细胞对支持加速生长的能源的需求增加。当营养物质变得有限时,癌症细胞可能会转向非常规能源,这些能源通过包括自噬和溶酶体在内的营养物质清除途径动员。因此,几种癌症高度依赖于这些途径的组成型激活来降解和回收细胞材料。在这里,我们关注转录因子的MiT/TFE家族,其控制自噬和溶酶体生物发生的转录程序,并已成为癌症能量代谢的调节因子。这些新发现补充了早期的报道,即涉及MiT/TFE基因的染色体易位和扩增有助于肾细胞癌、黑色素瘤和肉瘤的病因和病理生理学,表明这些因素在更广泛的癌症中具有多效性作用。了解MiT/TFE因子的致癌和应激适应作用之间的相互作用,可以阐明细胞稳态的基本机制,并为癌症治疗提供新的策略。
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引用次数: 0
Aberrant RNA Splicing in Cancer. 癌症中的RNA剪接异常
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-01 Epub Date: 2018-11-28 DOI: 10.1146/annurev-cancerbio-030617-050407
Luisa Escobar-Hoyos, Katherine Knorr, Omar Abdel-Wahab

RNA splicing, the enzymatic process of removing segments of premature RNA to produce mature RNA, is a key mediator of proteome diversity and regulator of gene expression. Increased systematic sequencing of the genome and transcriptome of cancers has identified a variety of means by which RNA splicing is altered in cancer relative to normal cells. These findings, in combination with the discovery of recurrent change-of-function mutations in splicing factors in a variety of cancers, suggest that alterations in splicing are drivers of tumorigenesis. Greater characterization of altered splicing in cancer parallels increasing efforts to pharmacologically perturb splicing and early-phase clinical development of small molecules that disrupt splicing in patients with cancer. Here we review recent studies of global changes in splicing in cancer, splicing regulation of mitogenic pathways critical in cancer transformation, and efforts to therapeutically target splicing in cancer.

RNA 剪接是去除未成熟 RNA 片段以产生成熟 RNA 的酶切过程,是蛋白质组多样性的关键媒介和基因表达的调节器。通过对癌症基因组和转录组进行系统测序,发现了癌症中 RNA 剪接相对于正常细胞发生改变的多种途径。这些发现,结合在多种癌症中发现的剪接因子中反复出现的功能性突变,表明剪接的改变是肿瘤发生的驱动因素。在对癌症中剪接改变的特征进行深入研究的同时,人们也在不断努力对剪接进行药理扰乱,并在癌症患者中进行干扰剪接的小分子药物的早期临床开发。在此,我们回顾了近期关于癌症中剪接的整体变化、对癌症转化至关重要的有丝分裂通路的剪接调控以及针对癌症中剪接的治疗努力的研究。
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引用次数: 0
The Fanconi Anemia Pathway in Cancer. 癌症中的范可尼贫血途径。
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-01 DOI: 10.1146/annurev-cancerbio-030617-050422
Joshi Niraj, Anniina Färkkilä, Alan D D'Andrea

Fanconi anemia (FA) is a complex genetic disorder characterized by bone marrow failure (BMF), congenital defects, inability to repair DNA interstrand cross-links (ICLs), and cancer predisposition. FA presents two seemingly opposite characteristics: (a) massive cell death of the hematopoietic stem and progenitor cell (HSPC) compartment due to extensive genomic instability, leading to BMF, and (b) uncontrolled cell proliferation leading to FA-associated malignancies. The canonical function of the FA proteins is to collaborate with several other DNA repair proteins to eliminate clastogenic (chromosome-breaking) effects of DNA ICLs. Recent discoveries reveal that the FA pathway functions in a critical tumor-suppressor network to preserve genomic integrity by stabilizing replication forks, mitigating replication stress, and regulating cytokinesis. Homozygous germline mutations (biallelic) in 22 FANC genes cause FA, whereas heterozygous germline mutations in some of the FANC genes (monoallelic), such as BRCA1 and BRCA2, do not cause FA but significantly increase cancer susceptibility sporadically in the general population. In this review, we discuss our current understanding of the functions of the FA pathway in the maintenance of genomic stability, and we present an overview of the prevalence and clinical relevance of somatic mutations in FA genes.

范可尼贫血(FA)是一种复杂的遗传性疾病,其特征是骨髓衰竭(BMF)、先天性缺陷、无法修复DNA链间交联(ICLs)和癌症易感性。FA表现出两个看似相反的特征:(a)由于广泛的基因组不稳定性导致造血干细胞和祖细胞(HSPC)室大量细胞死亡,导致BMF; (b)不受控制的细胞增殖导致FA相关的恶性肿瘤。FA蛋白的典型功能是与其他几种DNA修复蛋白协同消除DNA ICLs的致裂性(染色体断裂)效应。最近的发现表明,FA通路在一个关键的肿瘤抑制网络中起作用,通过稳定复制分叉、减轻复制压力和调节细胞分裂来保持基因组的完整性。22个FANC基因的纯合子种系突变(双等位基因)导致FA,而一些FANC基因的杂合子种系突变(单等位基因),如BRCA1和BRCA2,不会导致FA,但在一般人群中会显著增加癌症易感性。在这篇综述中,我们讨论了我们目前对FA通路在维持基因组稳定性中的功能的理解,并概述了FA基因体细胞突变的患病率和临床相关性。
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引用次数: 239
Homology-Directed Repair and the Role of BRCA1, BRCA2, and Related Proteins in Genome Integrity and Cancer. 同源定向修复以及 BRCA1、BRCA2 和相关蛋白在基因组完整性和癌症中的作用。
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2018-03-01 Epub Date: 2017-12-01 DOI: 10.1146/annurev-cancerbio-030617-050502
Chun-Chin Chen, Weiran Feng, Pei Xin Lim, Elizabeth M Kass, Maria Jasin

Germ-line and somatic mutations in genes that promote homology-directed repair (HDR), especially BRCA1 and BRCA2, are frequently observed in several cancers, in particular, breast and ovary but also prostate and other cancers. HDR is critical for the error-free repair of DNA double-strand breaks and other lesions, and HDR factors also protect stalled replication forks. As a result, loss of BRCA1 or BRCA2 poses significant risks to genome integrity, leading not only to cancer predisposition but also to sensitivity to DNA-damaging agents, affecting therapeutic approaches. Here we review recent advances in our understanding of BRCA1 and BRCA2, including how they genetically interact with other repair factors, how they protect stalled replication forks, how they affect the response to aldehydes, and how loss of their functions links to mutation signatures. Importantly, given the recent advances with poly(ADP-ribose) polymerase inhibitors (PARPi) for the treatment of HDR-deficient tumors, we discuss mechanisms by which BRCA-deficient tumors acquire resistance to PARPi and other agents.

促进同源定向修复(HDR)的基因,特别是 BRCA1 和 BRCA2,经常在几种癌症中出现种系突变和体细胞突变,尤其是乳腺癌和卵巢癌,还有前列腺癌和其他癌症。HDR 对于无差错修复 DNA 双链断裂和其他病变至关重要,HDR 因子还能保护停滞的复制叉。因此,BRCA1 或 BRCA2 的缺失会对基因组的完整性构成重大风险,不仅会导致癌症易感性,还会导致对 DNA 损伤因子的敏感性,从而影响治疗方法。在此,我们回顾了最近在了解 BRCA1 和 BRCA2 方面取得的进展,包括它们如何与其他修复因子发生基因相互作用、它们如何保护停滞的复制叉、它们如何影响对醛的反应,以及它们的功能缺失如何与突变特征相关联。重要的是,鉴于聚(ADP-核糖)聚合酶抑制剂(PARPi)在治疗HDR缺陷肿瘤方面的最新进展,我们将讨论BRCA缺陷肿瘤对PARPi和其他药物产生耐药性的机制。
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引用次数: 0
Lineage Plasticity in Cancer Progression and Treatment. 癌症进展和治疗中的血统可塑性
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2018-03-01 Epub Date: 2017-12-01 DOI: 10.1146/annurev-cancerbio-030617-050224
Clémentine Le Magnen, Michael M Shen, Cory Abate-Shen

Historically, it has been widely presumed that differentiated cells are determined during development and become irreversibly committed to their designated fates. In certain circumstances, however, differentiated cells can display plasticity by changing their identity, either by dedifferentiation to a progenitor-like state or by transdifferentiation to an alternative differentiated cell type. Such cellular plasticity can be triggered by physiological or oncogenic stress, or it can be experimentally induced through cellular reprogramming. Notably, physiological stresses that promote plasticity, such as severe tissue damage, inflammation, or senescence, also represent hallmarks of cancer. Furthermore, key drivers of cellular plasticity include major oncogenic and tumor suppressor pathways and can be exacerbated by drug treatment. Thus, plasticity may help cancer cells evade detection and treatment. We propose that cancer can be considered as a disease of excess plasticity, a notion that has important implications for intervention and treatment.

一直以来,人们普遍认为分化细胞在发育过程中就已确定,并不可逆转地遵循其指定的命运。然而,在某些情况下,分化细胞可以通过改变其特性而表现出可塑性,要么是通过去分化而进入类似祖细胞的状态,要么是通过转分化而进入另一种分化细胞类型。这种细胞可塑性可由生理或致癌压力引发,也可通过细胞重编程实验诱导。值得注意的是,促进可塑性的生理压力,如严重的组织损伤、炎症或衰老,也是癌症的特征。此外,细胞可塑性的关键驱动因素包括主要的致癌和抑瘤通路,而且会因药物治疗而加剧。因此,可塑性可能有助于癌细胞逃避检测和治疗。我们建议将癌症视为一种可塑性过强的疾病,这一观点对干预和治疗具有重要意义。
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引用次数: 0
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Annual Review of Cancer Biology-Series
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