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Deciphering Human Tumor Biology by Single-Cell Expression Profiling 通过单细胞表达谱解读人类肿瘤生物学
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055609
I. Tirosh, M. Suvà
Human tumors are complex ecosystems where diverse cancer and noncancer cells interact to determine tumor biology and response to therapies. Genomic and transcriptomic methods have traditionally profiled these intricate ecosystems as bulk samples, thereby masking individual cellular programs and the variability among them. Recent advances in single-cell profiling have paved the way for studying tumors at the resolution of individual cells, providing a compelling strategy to bridge gaps in our understanding of human tumors. Here, we review methodologies for single-cell expression profiling of tumors and the initial studies deploying them in clinical contexts. We highlight how these studies uncover new biology and provide insights into drug resistance, stem cell programs, metastasis, and tumor classifications. We also discuss areas of technology development in single-cell genomics that provide new tools to address key questions in cancer biology. These emerging studies and technologies have the potential to revolutionize our understanding and management of human malignancies.
人类肿瘤是一个复杂的生态系统,不同的癌细胞和非癌细胞相互作用,决定肿瘤生物学和对治疗的反应。基因组学和转录组学方法传统上将这些复杂的生态系统作为大样本进行分析,从而掩盖了单个细胞程序和它们之间的可变性。单细胞分析的最新进展为在单个细胞的分辨率下研究肿瘤铺平了道路,为我们对人类肿瘤的理解提供了一个令人信服的策略。在这里,我们回顾了肿瘤单细胞表达谱的方法以及在临床环境中应用它们的初步研究。我们强调这些研究如何揭示新的生物学,并为耐药性、干细胞程序、转移和肿瘤分类提供见解。我们还讨论了单细胞基因组学的技术发展领域,为解决癌症生物学中的关键问题提供了新的工具。这些新兴的研究和技术有可能彻底改变我们对人类恶性肿瘤的理解和管理。
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引用次数: 38
PARP Trapping Beyond Homologous Recombination and Platinum Sensitivity in Cancers PARP捕获超越同源重组和铂在癌症中的敏感性
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055914
J. Murai, Y. Pommier
Poly(ADP-ribose) polymerase inhibitors (PARPis) have recently been approved for the treatment of ovarian and breast cancers with BRCA mutations, as well as for maintenance therapies regardless of BRCA mutation for ovarian and primary peritoneal cancers that previously responded to platinum-based chemotherapy. The rationale of these indications is derived from the facts that cancer cells with BRCA mutations are defective in homologous recombination (HR), which confers synthetic lethality with PARPis, and that some of the sensitivity-determining factors for PARPis are shared with platinums. Although BRCA1 and BRCA2 are central for HR, more players within and beyond HR are emerging as response determinants to PARPis. Furthermore, there are similarities as well as differences in the DNA lesions and repair pathways induced by PARPis, platinums, and camptothecin topoisomerase 1 (TOP1) inhibitors. Here we review the sensitivity-determining factors for PARPis and the rationale for using PARPis as single agents and in combination therapy for cancers.
聚(adp -核糖)聚合酶抑制剂(PARPis)最近被批准用于治疗BRCA突变的卵巢癌和乳腺癌,以及先前对铂类化疗有反应的卵巢癌和原发性腹膜癌的维持治疗,无论BRCA突变如何。这些适应症的基本原理源于这样一个事实,即BRCA突变的癌细胞在同源重组(HR)中存在缺陷,从而赋予PARPis的合成致死率,并且PARPis的一些敏感性决定因素与铂类药物相同。尽管BRCA1和BRCA2是HR的核心,但HR内外的更多参与者正在成为parpi的反应决定因素。此外,PARPis、铂和喜树碱拓扑异构酶1 (TOP1)抑制剂诱导的DNA损伤和修复途径既有相似之处,也有差异。在这里,我们回顾了PARPis的敏感性决定因素,以及使用PARPis作为单一药物和联合治疗癌症的基本原理。
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引用次数: 59
Circulating Tumor DNA: Clinical Monitoring and Early Detection 循环肿瘤DNA的临床监测与早期检测
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055719
R. Corcoran
Roughly 70 years after the presence of cell-free DNA (cfDNA) in circulating blood was discovered, cfDNA has emerged as a transformative technology in clinical oncology. The ability to assess the presence, level, and composition of tumor DNA from a routine, noninvasive blood draw has opened the door to a broad array of high-impact clinical applications. While cfDNA is rapidly gaining clinical favor as a means of tumor mutational profiling without the need for an invasive biopsy, emerging applications in the areas of clinical monitoring and early cancer detection hold tremendous promise. These developing applications of cfDNA are reviewed herein.
在循环血液中存在无细胞DNA(cfDNA)大约70年后,cfDNA已成为临床肿瘤学中的一项变革性技术。通过常规非侵入性抽血评估肿瘤DNA的存在、水平和组成的能力为广泛的高影响力临床应用打开了大门。虽然cfDNA作为一种无需侵入性活组织检查的肿瘤突变谱分析方法正在迅速获得临床青睐,但在临床监测和癌症早期检测领域的新兴应用前景巨大。本文综述了cfDNA的应用进展。
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引用次数: 7
Dietary Fat and Sugar in Promoting Cancer Development and Progression 饮食中的脂肪和糖促进癌症的发生和发展
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055855
M. Goncalves, B. Hopkins, L. Cantley
The uncontrolled cellular growth that characterizes tumor formation requires a constant delivery of nutrients. Since the 1970s, researchers have wondered if the supply of nutrients from the diet could impact tumor development. Numerous studies have assessed the impact of dietary components, specifically sugar and fat, to increased cancer risk. For the most part, data from these trials have been inconclusive; however, this does not indicate that dietary factors do not contribute to cancer progression. Rather, the dietary contribution may be dependent on tumor, patient, and context, making it difficult to detect in the setting of large trials. In this review, we combine data from prospective cohort trials with mechanistic studies in mice to argue that fat and sugar can play a role in tumorigenesis and disease progression. We find that certain tumors may respond directly to dietary sugar (colorectal and endometrial cancers) and fat (prostate cancer) or indirectly to the obese state (breast cancer).
不受控制的细胞生长是肿瘤形成的特征,需要持续的营养输送。自20世纪70年代以来,研究人员一直想知道饮食中的营养供应是否会影响肿瘤的发展。许多研究已经评估了饮食成分,特别是糖和脂肪,对增加癌症风险的影响。在大多数情况下,这些试验的数据都是不确定的;然而,这并不表明饮食因素与癌症进展无关。相反,饮食的作用可能取决于肿瘤、患者和环境,这使得在大型试验中很难检测到。在这篇综述中,我们将前瞻性队列试验的数据与小鼠的机制研究相结合,认为脂肪和糖在肿瘤发生和疾病进展中发挥作用。我们发现,某些肿瘤可能直接与饮食中的糖(结肠直肠癌和子宫内膜癌)和脂肪(前列腺癌)有关,或间接与肥胖状态(乳腺癌)有关。
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引用次数: 25
Academic Discovery of Anticancer Drugs: Historic and Future Perspectives 抗癌药物的学术发现:历史与未来展望
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055645
A. Carugo, G. Draetta
The identification and prosecution of meritorious anticancer drug targets and the discovery of clinical candidates represent an extraordinarily time- and resource-intensive process, and the current failure rate of late-stage drugs is a critical issue that must be addressed. Relationships between academia and industry in drug discovery and development have continued to change over time as a result of technical and financial challenges and, most importantly, to the objective of translating impactful scientific discoveries into clinical opportunities. This Golden Age of anticancer drug discovery features an increased appreciation for the high-risk, high-innovation research conducted in the nonprofit sector, with the goals of infusing commercial drug development with intellectual capital and curating portfolios that are financially tenable and clinically meaningful. In this review, we discuss the history of academic-industry interactions in the context of antidrug discovery and offer a view of where these interactions are likely headed as we continue to reach new horizons in our understanding of the immense complexities of cancer biology.
有价值的抗癌药物靶点的识别和起诉以及临床候选药物的发现是一个非常耗时和资源密集的过程,目前晚期药物的失败率是一个必须解决的关键问题。随着时间的推移,由于技术和财政方面的挑战,以及最重要的是,为了将有影响力的科学发现转化为临床机会,学术界和工业界在药物发现和开发方面的关系不断发生变化。在这个抗癌药物发现的黄金时代,人们越来越重视高风险、高创新的研究,这些研究是在非营利部门进行的,其目标是为商业药物开发注入智力资本,并策划经济上可行、临床上有意义的投资组合。在这篇综述中,我们讨论了在抗药物发现的背景下学术界与工业界相互作用的历史,并提供了这些相互作用可能走向的观点,因为我们在对癌症生物学的巨大复杂性的理解中不断达到新的视野。
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引用次数: 15
Targeting Cancer at the Intersection of Signaling and Epigenetics 信号传导与表观遗传学交叉点靶向癌症
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030617-050400
S. Guerra, K. Cichowski
While mutations resulting in the chronic activation of signaling pathways drive human cancer, the epigenetic state of a cell ultimately dictates the biological response to any given oncogenic signal. Moreover, large-scale genomic sequencing efforts have now identified a plethora of mutations in chromatin regulatory genes in human tumors, which can amplify, modify, or complement traditional oncogenic events. Nevertheless, the co-occurrence of oncogenic and epigenetic defects appears to create novel therapeutic vulnerabilities, which can be targeted by specific drug combinations. Here we discuss general mechanisms by which oncogenic and epigenetic alterations cooperate in human cancer and synthesize the field's early efforts in developing promising therapeutic combinations. Collectively, these studies reveal common themes underlying potential chemical synthetic lethal interactions and support both the expansion and refinement of this type of therapeutic approach.
虽然导致信号通路慢性激活的突变驱动人类癌症,但细胞的表观遗传状态最终决定了对任何给定致癌信号的生物反应。此外,大规模的基因组测序工作现在已经在人类肿瘤中发现了大量染色质调节基因的突变,这些突变可以扩增、修饰或补充传统的致癌事件。然而,致癌和表观遗传缺陷的同时出现似乎产生了新的治疗漏洞,这些漏洞可以通过特定的药物组合来靶向。在这里,我们讨论了人类癌症中致癌和表观遗传改变相互作用的一般机制,并综合了该领域在开发有前景的治疗组合方面的早期努力。总之,这些研究揭示了潜在的化学合成致死相互作用的共同主题,并支持这类治疗方法的扩展和完善。
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引用次数: 5
Natural Killer Cells in Cancer Immunotherapy 癌症免疫治疗中的自然杀伤细胞
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055653
Jeffrey S. Miller, L. Lanier
Natural killer (NK) cells have evolved to complement T and B cells in host defense against pathogens and cancer. They recognize infected cells and tumors using a sophisticated array of activating, costimulatory, and inhibitory receptors that are expressed on NK cell subsets to create extensive functional diversity. NK cells can be targeted to kill with exquisite antigen specificity by antibody-dependent cellular cytotoxicity. NK and T cells share many of the costimulatory and inhibitory receptors that are currently under evaluation in the clinic for cancer immunotherapy. As with T cells, genetic engineering is being employed to modify NK cells to specifically target them to tumors and to enhance their effector functions. As the selective pressures exerted by immunotherapies to augment CD8+ T cell responses may result in loss of MHC class I, NK cells may provide an important fail-safe to eliminate these tumors by their capacity to eliminate tumors that are “missing self.”
自然杀伤(NK)细胞已经进化为在宿主防御病原体和癌症时补充T和B细胞。他们使用一系列复杂的激活、共刺激和抑制受体来识别感染细胞和肿瘤,这些受体在NK细胞亚群上表达,以创造广泛的功能多样性。NK细胞可以通过抗体依赖性细胞毒性以优异的抗原特异性被靶向杀伤。NK和T细胞共享许多共刺激和抑制受体,这些受体目前正在癌症免疫疗法的临床中进行评估。与T细胞一样,基因工程正被用于修饰NK细胞,使其特异性靶向肿瘤,并增强其效应器功能。由于免疫疗法为增强CD8+T细胞反应而施加的选择性压力可能导致MHC I类的丧失,NK细胞可能通过其消除“自我缺失”肿瘤的能力,为消除这些肿瘤提供了一个重要的故障安全机制
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引用次数: 84
Targeting Therapies for the p53 Protein in Cancer Treatments 癌症治疗中p53蛋白的靶向治疗
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055455
A. Levine
Half of all human cancers contain TP53 mutations, and in many other cancers, the function of the p53 protein is compromised. The diversity of these mutations and phenotypes presents a challenge to the development of drugs that target p53 mutant cancer cells. This review describes the rationale for many different approaches in the development of p53 targeted therapies: ( a) viruses and gene therapies, ( b) increased levels and activity of wild-type p53 proteins in cancer cells, ( c) p53 protein gain-of-function inhibitors, ( d) p53 protein loss-of-function structural correctors, ( e) mutant p53 protein synthetic lethal drugs interfering with the p53 pathway, and ( f) cellular immune responses to mutant p53 protein antigens. As these types of therapies are developed, tested, and evaluated, the best of them will have a significant impact upon cancer treatments and possibly prevention.
一半的人类癌症含有TP53突变,在许多其他癌症中,p53蛋白的功能受到损害。这些突变和表型的多样性对靶向p53突变癌细胞的药物开发提出了挑战。这篇综述描述了开发p53靶向治疗的许多不同方法的基本原理:(a)病毒和基因疗法,(b)癌细胞中野生型p53蛋白的水平和活性增加,(c) p53蛋白功能获得抑制剂,(d) p53蛋白功能丧失结构校正器,(e)突变型p53蛋白合成致命药物干扰p53通路,(f)突变型p53蛋白抗原的细胞免疫反应。随着这些治疗方法的开发、测试和评估,其中最好的将对癌症治疗和可能的预防产生重大影响。
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引用次数: 65
HSP90: Enabler of Cancer Adaptation 热休克蛋白90:癌症适应的推动者
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055533
Alex M. Jaeger, L. Whitesell
The stability and function of many oncogenic mutant proteins depend on heat shock protein 90 (HSP90). This unique activity has inspired the exploration of HSP90 as an anticancer target for over two decades. Unfortunately, while clinical trials of highly optimized HSP90 inhibitors have demonstrated modest benefit for patients with advanced cancers, most commonly stabilization of disease, no HSP90 inhibitor has demonstrated sufficient efficacy to achieve FDA approval to date. This review discusses potential reasons for the limited success of these agents and how our increasingly sophisticated understanding of HSP90 suggests alternative, potentially more effective strategies for targeting it to treat cancers. First, we focus on insights gained from model organisms that suggest a fundamental role for HSP90 in supporting the adaptability and heterogeneity of cancers, key factors underlying their ability to evolve and acquire drug resistance. Second, we examine how HSP90’s role in promoting the stability of mutant proteins might be targeted in genetically unstable tumor cells to reveal their aberrant, foreign proteome to the immune system. Both of these emerging aspects of HSP90 biology suggest that the most effective use of HSP90 inhibitors may not be at high doses with the intent to kill cancer cells, but rather in combination with other molecularly targeted therapies at modest, non-heat shock-inducing exposures that limit the adaptive capacity of cancers.
许多致癌突变蛋白的稳定性和功能依赖于热休克蛋白90(HSP90)。这种独特的活性激发了20多年来HSP90作为抗癌靶点的探索。不幸的是,尽管高度优化的HSP90抑制剂的临床试验已证明对晚期癌症患者(最常见的是疾病的稳定)有适度的益处,但迄今为止,没有任何HSP90抑制剂显示出足够的疗效来获得美国食品药品监督管理局的批准。这篇综述讨论了这些药物有限成功的潜在原因,以及我们对HSP90日益复杂的理解如何为靶向其治疗癌症提供替代的、潜在的更有效的策略。首先,我们关注从模式生物中获得的见解,这些见解表明HSP90在支持癌症的适应性和异质性方面发挥着根本作用,这是癌症进化和获得耐药性的关键因素。其次,我们研究了HSP90在促进突变蛋白稳定性中的作用如何在遗传不稳定的肿瘤细胞中被靶向,以向免疫系统揭示其异常的外源蛋白质组。HSP90生物学的这两个新兴方面都表明,HSP90抑制剂的最有效使用可能不是高剂量杀死癌症细胞,而是与其他分子靶向治疗相结合,在适度的非热休克暴露下,限制癌症的适应能力。
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引用次数: 50
Organoid Models for Cancer Research 癌症研究的类器官模型
IF 7.7 2区 医学 Q1 ONCOLOGY Pub Date : 2019-03-04 DOI: 10.1146/ANNUREV-CANCERBIO-030518-055702
H. Clevers, D. Tuveson
Organoid cultures have emerged as powerful model systems accelerating discoveries in cellular and cancer biology. These three-dimensional cultures are amenable to diverse techniques, including high-throughput genome and transcriptome sequencing, as well as genetic and biochemical perturbation, making these models well suited to answer a variety of questions. Recently, organoids have been generated from diverse human cancers, including breast, colon, pancreas, prostate, bladder, and liver cancers, and studies involving these models are expanding our knowledge of the etiology and characteristics of these malignancies. Co-cultures of cancer organoids with non-neoplastic stromal cells enable investigation of the tumor microenvironment. In addition, recent studies have established that organoids have a place in personalized medicine approaches. Here, we describe the application of organoid technology to cancer discovery and treatment.
类器官培养已经成为强大的模型系统,加速了细胞和癌症生物学的发现。这些三维培养适用于各种技术,包括高通量基因组和转录组测序,以及遗传和生化扰动,使这些模型非常适合回答各种问题。最近,从多种人类癌症中产生了类器官,包括乳腺癌、结肠癌、胰腺癌、前列腺癌、膀胱癌和肝癌,涉及这些模型的研究正在扩大我们对这些恶性肿瘤的病因和特征的认识。肿瘤类器官与非肿瘤间质细胞的共培养使研究肿瘤微环境成为可能。此外,最近的研究已经确定,类器官在个性化医疗方法中占有一席之地。在这里,我们描述了类器官技术在癌症发现和治疗中的应用。
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引用次数: 42
期刊
Annual Review of Cancer Biology-Series
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