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Integrating Syndromic Molecular Assays into Routine Diagnostic Microbiology: Benefits and Challenges. 将综合征分子分析纳入常规诊断微生物学:益处和挑战。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-07 DOI: 10.3390/antibiotics15020182
Sara Comini, Anna Maria Priori, Francesco Coppari, Matteo Sabbatini, Concetta Bruno, Matteo Boattini, Gabriele Bianco, Francesca Brecciaroli

Background/Objectives: Rapid pathogen identification is essential to optimize antimicrobial therapy and improve patient outcomes, particularly in severe infections. Syndromic molecular diagnostics have been introduced to overcome the limitations of conventional culture-based methods. This study evaluated the diagnostic performance and real-life implementation of BioFire® FilmArray® syndromic panels compared with routine microbiological diagnostics. Methods: A total of 955 clinical specimens collected between 2022 and June 2025 were retrospectively analyzed, including positive blood cultures (n = 400), lower respiratory tract samples (n = 309), cerebrospinal fluid (n = 158) and stool specimens (n = 88). FilmArray® BCID2, Pneumonia Plus, Meningitis/Encephalitis and Gastrointestinal panels were performed on the Biofire Fimarray® instrument according to clinical indication and compared with conventional culture-based identification and phenotypic antimicrobial susceptibility testing. Results: Overall diagnostic concordance between BioFire® FilmArray® syndromic panels and conventional methods was high across all specimen types, with the highest positive percent agreement (PPA) observed for bloodstream infections (97.7%) and gastrointestinal pathogens (100%). In respiratory samples, the Pneumonia Plus panel detected a considerable number of microorganisms that could not be identified by culture, including viral pathogens and fastidious bacteria. Molecular detection of antimicrobial resistance markers showed excellent concordance with phenotypic profiles, with 100% agreement for CTX-M, carbapenemases (KPC, NDM, OXA-48-like, IMP), and vanA/B, while lower concordance was observed for mecA/C in staphylococci. In parallel, semi-quantitative bacterial loads provided by the Pneumonia Plus panel showed a strong essential agreement with culture-based quantification (97.4%, ±1 log10). Across all panels, syndromic testing significantly reduced diagnostic turnaround time. Conclusions: Syndromic molecular panels provide rapid and reliable simultaneous detection of pathogens, as well as early resistance marker detection, thereby supporting timely antimicrobial optimization and stewardship when integrated with conventional microbiological diagnostics.

背景/目的:快速病原体鉴定对于优化抗菌药物治疗和改善患者预后至关重要,特别是在严重感染中。综合征分子诊断已被引入,以克服传统的基于培养的方法的局限性。本研究评估了BioFire®FilmArray®综合征面板与常规微生物诊断的诊断性能和实际应用情况。方法:回顾性分析2022年至2025年6月收集的955例临床标本,包括阳性血培养标本400例、下呼吸道标本309例、脑脊液标本158例、粪便标本88例。根据临床适应症,在Biofire firarray®仪器上进行FilmArray®bccid2、Pneumonia Plus、脑膜炎/脑炎和胃肠道组,并与传统的基于培养的鉴定和表型抗菌药敏试验进行比较。结果:在所有标本类型中,BioFire®FilmArray®综合征面板与常规方法的诊断一致性很高,在血液感染(97.7%)和胃肠道病原体(100%)中观察到最高的阳性率一致性(PPA)。在呼吸道样本中,肺炎Plus小组检测到相当数量的微生物无法通过培养识别,包括病毒性病原体和挑剔的细菌。分子检测结果显示,耐药标记与葡萄球菌表型具有良好的一致性,CTX-M、碳青霉烯酶(KPC、NDM、oxa -48样、IMP)和vanA/B的一致性为100%,而mecA/C的一致性较低。与此同时,Pneumonia Plus小组提供的半定量细菌负荷与基于培养的定量显示出强烈的基本一致性(97.4%,±1 log10)。在所有小组中,综合征检测显著缩短了诊断周转时间。结论:综合征分子板提供快速可靠的病原体同时检测,以及早期耐药性标记检测,从而支持与传统微生物学诊断相结合的及时抗菌药物优化和管理。
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引用次数: 0
Knowledge and Attitudes of Community Pharmacists Towards Antibiotic Use and Antimicrobial Resistance in Western Greece. 西希腊社区药师对抗生素使用和耐药性的知识和态度。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-07 DOI: 10.3390/antibiotics15020184
Maria Sarri, Despoina Gkentzi, Stelios F Assimakopoulos, Markos Marangos, Maria Lagadinou

Background: Antibiotic misuse and overuse remain a critical driver of antimicrobial resistance (AMR), a global health threat associated with increased morbidity, mortality, and healthcare costs. In Greece, where antibiotic consumption and resistance rates are among the highest in Europe, community pharmacists are well-positioned to contribute to antimicrobial stewardship efforts.

Objective: This study aimed to assess the knowledge and attitudes of community pharmacists in Achaia, Western Greece, regarding antibiotic use and AMR, in order to identify knowledge gaps and inform future educational interventions.

Methods: A cross-sectional survey was conducted between May and July 2023 among 207 pharmacists using a structured, self-administered questionnaire. The survey assessed demographics, knowledge of antibiotic indications, dispensing practices, and awareness of AMR. Statistical analysis included Chi-square tests and multivariate logistic regression.

Results: Pharmacists demonstrated high levels of knowledge regarding appropriate antibiotic use in conditions such as sore throat (95%), bronchitis (76%), influenza (77.5%), and diarrhea (95%). However, knowledge was lower for rhinitis (60%) and sinusitis (56%). Almost all pharmacists (99%) were aware of AMR, and 86% perceived it as a significant public health issue in Greece. Logistic regression showed that pharmacists with 5-10 years of experience were significantly less likely to believe that antibiotics are always effective (OR = 0.08, p = 0.042).

Conclusion: Pharmacists in Western Greece are generally well-informed about antibiotic use and AMR, yet misconceptions persist, especially for viral infections. Targeted educational interventions, interprofessional collaboration, and stricter enforcement of prescription regulations are needed to strengthen the role of pharmacists in combating AMR at the community level.

背景:抗生素滥用和过度使用仍然是抗菌素耐药性(AMR)的关键驱动因素,是与发病率、死亡率和医疗费用增加相关的全球健康威胁。在希腊,抗生素消费量和耐药率是欧洲最高的,社区药剂师处于有利地位,可以为抗菌素管理工作做出贡献。目的:本研究旨在评估希腊西部亚该亚地区社区药师对抗生素使用和抗生素耐药性的知识和态度,以确定知识差距,为未来的教育干预提供信息。方法:于2023年5月至7月对207名药师进行横断面调查,采用结构化自填问卷。调查评估了人口统计、抗生素适应症知识、配药做法和对抗菌素耐药性的认识。统计分析包括卡方检验和多元逻辑回归。结果:药师对咽喉痛(95%)、支气管炎(76%)、流感(77.5%)和腹泻(95%)等病症的适当抗生素使用表现出较高的知识水平。然而,对鼻炎(60%)和鼻窦炎(56%)的了解程度较低。几乎所有的药剂师(99%)都知道抗菌素耐药性,86%的药剂师认为这是希腊的一个重大公共卫生问题。Logistic回归分析结果显示,具有5 ~ 10年工作经验的药师认为抗生素总是有效的可能性明显较低(OR = 0.08, p = 0.042)。结论:西希腊的药剂师普遍对抗生素使用和抗菌素耐药性知情,但误解仍然存在,特别是对病毒感染。需要有针对性的教育干预、专业间合作和更严格地执行处方法规,以加强药剂师在社区一级抗击抗生素耐药性方面的作用。
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引用次数: 0
Barriers and Facilitators in the Implementation of a Syndromic Antibiogram for Pediatric Patients Hospitalized in Maputo, Mozambique: A Qualitative Study Using the Dynamic Adaptation Process (DAP) Framework. 莫桑比克马普托住院儿科患者实施综合征抗生素谱的障碍和促进因素:一项使用动态适应过程(DAP)框架的定性研究。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.3390/antibiotics15020178
Darlenne B Kenga, Troy D Moon, Mohsin Sidat, Valéria Chicamba, Andrea Ntanga Kenga, Yara Manjate, Dércio Nhanala, Inês C Caetano, Ramígio Pololo, Olga Cambaco, Jahit Sacarlal

Introduction: The global rise in antimicrobial resistance poses a growing threat to public health, particularly in low- and middle-income countries where diagnostic capacity and surveillance systems remain limited. In these settings, optimizing empiric antibiotic prescribing is critical, and syndromic antibiograms offer a promising approach to support evidence-based decision-making. This study examines anticipated barriers and facilitators to the adoption of syndromic antibiograms from the perspectives of pediatric clinicians and laboratory professionals at Maputo Central Hospital in Mozambique. Methods: Guided by the Dynamic Adaptation Process (DAP) framework, this qualitative study used semi-structured interviews with eighteen healthcare professionals to explore empiric antibiotic prescribing practices, perceptions of syndromic antibiograms, and system-level barriers and facilitators. Data were analyzed thematically using deductive codes derived from the DAP framework alongside inductive codes generated from participants' narratives. Results: Barriers were identified at individual, organizational, and systems levels. Individual barriers included limited awareness, reliance on traditional practices, and resistance to change. Organizational barriers included weak leadership support, insufficient training, poor communication between clinicians and laboratory staff, suboptimal sample collection, heavy workloads, and staff shortages. Systems-level barriers comprised shortages of laboratory supplies and medicines, delays in laboratory results, and weak monitoring mechanisms. Facilitators included health worker motivation for evidence-based practice, organizational collaboration, peer and team support, and the presence of influential champions. Systems-level enablers included functional laboratory services, supportive institutional environments, alignment with clinical guidelines, and recognition of clinical utility. Conclusions: Successful implementation of syndromic antibiograms in LMIC will require addressing systemic and organizational barriers while fostering professional motivation, collaboration, and institutional support. Sustainable integration will depend on coordinated strategies-including resource strengthening, continuous training, supportive leadership, and structured monitoring-that collectively strengthen antimicrobial stewardship and inform health policy.

导言:全球抗菌素耐药性上升对公共卫生构成越来越大的威胁,特别是在诊断能力和监测系统仍然有限的低收入和中等收入国家。在这些情况下,优化经验性抗生素处方至关重要,而症候群抗生素谱为支持循证决策提供了一种有希望的方法。本研究从莫桑比克马普托中心医院儿科临床医生和实验室专业人员的角度考察了采用综合征抗生素图的预期障碍和促进因素。方法:在动态适应过程(DAP)框架的指导下,本定性研究采用半结构化访谈,对18名医疗保健专业人员进行访谈,探讨经经验抗生素处方实践,对综合征抗生素图的看法,以及系统层面的障碍和促进因素。使用从DAP框架中导出的演绎代码和从参与者的叙述中生成的归纳代码对数据进行主题分析。结果:在个人、组织和系统层面确定了障碍。个体障碍包括有限的认识、对传统做法的依赖以及对变革的抵制。组织障碍包括领导支持薄弱、培训不足、临床医生和实验室工作人员之间沟通不畅、样本收集不理想、工作量大和人员短缺。系统层面的障碍包括实验室用品和药品短缺、实验室结果延迟以及监测机制薄弱。促进因素包括卫生工作者对循证实践的积极性、组织协作、同伴和团队支持以及有影响力的倡导者的出席。系统级的推动因素包括功能性实验室服务、支持性机构环境、与临床指南的一致性以及对临床效用的认可。结论:在低收入和中等收入国家成功实施综合征抗生素谱需要解决系统和组织障碍,同时培养专业动机、合作和机构支持。可持续整合将取决于协调一致的战略,包括资源加强、持续培训、支持性领导和结构化监测,这些战略共同加强抗微生物药物管理并为卫生政策提供信息。
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引用次数: 0
Unbound and Periprostatic Adipose Tissue Cefazolin Pharmacokinetics in Robotic-Assisted Radical Prostatectomy. 头孢唑林在机器人辅助根治性前列腺切除术中的药代动力学。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.3390/antibiotics15020181
Toshiaki Komatsu, Yuki Takahashi, Yoko Takayama, Yuto Akamada, Masaomi Ikeda, Hideyasu Tsumura, Daisuke Ishii, Kazumasa Matsumoto, Masatsugu Iwamura, Hirotsugu Okamoto, Hideaki Hanaki, Katsuya Otori

Background/Objectives: This study aimed to describe the population pharmacokinetics of cefazolin (CFZ) using unbound serum and periprostatic adipose tissue concentrations and to optimize dosing regimens for patients undergoing robotic-assisted radical prostatectomy (RARP). Methods: We investigated the population pharmacokinetics of CFZ using 295 unbound serum and 67 periprostatic adipose tissue samples from 67 individuals. CFZ concentrations were determined in all samples. A nonlinear mixed-effects model was developed. The pharmacodynamic target was defined as maintaining unbound trough and periprostatic adipose tissue concentrations exceeding the minimum inhibitory concentration (MIC) against methicillin-susceptible Staphylococcus aureus (MSSA) for over 90% of the dosing interval (MIC90; 0.5 mg/L). Results: Systemic clearance of unbound CFZ was significantly associated with creatinine clearance (CLcr). In patients with normal renal function, simulations showed that a 1 g CFZ infusion over 15 min maintained unbound concentrations exceeding the MSSA MIC90 for >90% of the 3 h interval after the initial dose. Notably, in patients with mild renal impairment (CLcr ≤ 80 mL/min), a 5 h dosing interval also achieved a >90% probability of maintaining the target CFZ concentration. Conclusions: The simulations demonstrated that the probability of target attainment of >90% was maintained for up to 5 h in patients with mild renal impairment (CLcr ≤ 80 mL/min). These findings provide a pharmacokinetic rationale suggesting that the standard additional dose may not be necessary for this subgroup; however, future clinical studies are needed to validate safety and efficacy.

背景/目的:本研究旨在通过未结合血清和前列腺周围脂肪组织浓度来描述头孢唑林(CFZ)的人群药代动力学,并优化机器人辅助根治性前列腺切除术(RARP)患者的给药方案。方法:利用67例患者的295份未结合血清和67份前列腺周围脂肪组织样本,研究CFZ的群体药代动力学。测定所有样品的CFZ浓度。建立了非线性混合效应模型。药效学目标定义为维持未结合谷和前列腺周围脂肪组织浓度超过对甲氧西林敏感金黄色葡萄球菌(MSSA)的最低抑制浓度(MIC)超过90%的给药间隔(MIC90; 0.5 mg/L)。结果:全身游离CFZ清除率与肌酐清除率(CLcr)显著相关。在肾功能正常的患者中,模拟显示1 g CFZ输注超过15分钟,在初始剂量后3小时间隔的90%内,未结合浓度保持超过MSSA MIC90。值得注意的是,在轻度肾功能损害患者(CLcr≤80 mL/min)中,5小时的给药间隔也实现了维持CFZ目标浓度的约90%的概率。结论:模拟表明,轻度肾功能损害患者(CLcr≤80 mL/min)达到>90%的概率可维持5小时。这些发现提供了一个药代动力学原理,表明该亚组可能不需要标准的额外剂量;然而,需要进一步的临床研究来验证安全性和有效性。
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引用次数: 0
A Century-Old Solution for 21st Century Challenges: Current Applications with a Focus on Biocontrol, Environmental Impacts, and Regulatory Perspectives. 21世纪挑战的百年解决方案:关注生物防治、环境影响和监管前景的当前应用。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.3390/antibiotics15020180
Anaelle Baud, Inès Rougis, Franck Bertolla

In the face of rising antimicrobial resistance, food insecurity, and climate change, bacteriophages are gaining renewed attention as promising biological alternatives to antibiotics across human, animal, and plant health sectors. Their high specificity, self-replicating capacity, and biodegradability make them valuable tools for combating antimicrobial or pesticide resistance and promoting sustainable biocontrol. This review discusses commonly accepted selection criteria for therapeutic phages, such as avoiding temperate types and screening for undesirable genes, while acknowledging ongoing debates and exceptions in specific clinical or ecological contexts. An overview of phage-based applications within a One Health framework is provided, spanning human medicine, veterinary practice, aquaculture, food safety and crop protection. Particular attention is given to agricultural biocontrol, where several successful plant protection strategies are highlighted, illustrating the feasibility and diversity of phage-based approaches. Despite their potential, key challenges remain regarding phage stability, formulation, and persistence under environmental conditions. Emerging innovations such as encapsulation, carrier bacteria, and protective formulations aim to enhance field performance. Furthermore, this review emphasizes the need to assess the environmental safety of phage applications, particularly their impacts on natural ecosystems, microbial communities, and ecological functions. Finally, the regulatory and policy challenges that currently limit the large-scale deployment of phages, particularly in the European Union, where they remain evaluated under conventional chemical pesticide frameworks are discussed. The development of dedicated regulatory pathways, better adapted to the specificities of phages, is argued to be essential for supporting their integration into agroecological transition strategies and next-generation antimicrobial policies.

面对日益严重的抗菌素耐药性、粮食不安全和气候变化,噬菌体作为人类、动物和植物卫生部门抗生素的有希望的生物替代品正重新受到关注。它们的高特异性、自我复制能力和可生物降解性使其成为对抗抗菌素或农药耐药性和促进可持续生物防治的宝贵工具。这篇综述讨论了普遍接受的治疗性噬菌体的选择标准,如避免温带类型和筛选不需要的基因,同时承认在特定的临床或生态背景下正在进行的争论和例外。概述了“同一个健康”框架下基于噬菌体的应用,涵盖人类医学、兽医实践、水产养殖、食品安全和作物保护。特别关注农业生物防治,重点介绍了几种成功的植物保护战略,说明了基于噬菌体的方法的可行性和多样性。尽管它们具有潜力,但在噬菌体的稳定性、配方和环境条件下的持久性方面仍然存在关键挑战。新兴的创新技术,如封装、细菌载体和保护配方,旨在提高现场性能。此外,本文强调有必要评估噬菌体应用的环境安全性,特别是其对自然生态系统、微生物群落和生态功能的影响。最后,讨论了目前限制噬菌体大规模部署的监管和政策挑战,特别是在欧盟,它们仍然在传统化学农药框架下进行评估。研究人员认为,开发能够更好地适应噬菌体特异性的专用调控途径对于支持噬菌体融入农业生态转型战略和下一代抗菌药物政策至关重要。
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引用次数: 0
Liposomal Encapsulation Reduces the Cytotoxic Effects of Gramicidin S in Monolayer and Spheroid Fibroblast Cultures. 脂质体包封降低革兰杀菌素S在单层和球形成纤维细胞培养中的细胞毒性作用。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.3390/antibiotics15020177
Ihor Perepelytsia, Galyna Bozhok, Volodymyr Berest, Valentina Gallo, Marco Pizzi, Larysa Sichevska, Oleksii Skorokhod

Background/Objectives: Gramicidin S (GS) is a cyclic antimicrobial peptide with strong antibacterial activity but significant cytotoxicity toward mammalian cells. This study evaluated GS-induced cytotoxicity in L929 fibroblast cells using both traditional 2D monolayer cultures and more physiologically relevant 3D spheroid models, and assessed whether liposomal encapsulation could mitigate toxicity and improve biocompatibility. Methods: L929 cells were cultured in monolayers and spheroids and treated with free GS or GS encapsulated in liposomes of varying lipid compositions. Cell viability and morphology were evaluated after 24 h of exposure using standard cytotoxicity assays. Results: Control liposomes, regardless of tested lipid type or concentration, showed no adverse effects on cell morphology or viability. Free GS caused pronounced, dose-dependent cytotoxicity in monolayers, decreasing viability to 11.0 ± 1.9% and 0.5 ± 1.1% at 50 and 75 µg/mL, respectively. By contrast, encapsulation in liposomes significantly reduced toxicity (p < 0.05), preserving 80.3-82.2% viability at 75 µg/mL depending on formulation, corresponding to protection factors exceeding 160-fold (80.3% vs. 0.5%). Spheroid cultures showed slightly higher resistance to GS; free GS reduced viability to 2.9%, while liposomal GS preserved it above 84.8%, depending on lipid composition. Conclusions: Liposomal encapsulation effectively reduces GS-induced cytotoxicity, likely by limiting direct membrane disruption. Moreover, spheroid models provide a more physiologically relevant and predictive platform for toxicity testing, while the results support nanoliposomes as a practical delivery strategy to enhance the safety of antimicrobial peptides during preclinical development.

背景/目的:Gramicidin S (GS)是一种具有较强抗菌活性的环状抗菌肽,但对哺乳动物细胞具有明显的细胞毒性。本研究使用传统的2D单层培养和更具有生理学相关性的3D球体模型来评估gs诱导的L929成纤维细胞的细胞毒性,并评估脂质体包封是否可以减轻毒性和改善生物相容性。方法:将L929细胞培养成单层和球形细胞,分别用不同脂质组成的脂质体包裹的游离GS或GS处理。暴露24小时后用标准细胞毒性试验评估细胞活力和形态。结果:无论测试的脂质类型或浓度如何,对照脂质体对细胞形态或活力均无不良影响。游离GS在单层细胞中引起明显的剂量依赖性细胞毒性,在50和75µg/mL时,细胞活力分别下降到11.0±1.9%和0.5±1.1%。相比之下,脂质体包封显著降低了毒性(p < 0.05),在75µg/mL时,根据配方的不同,保留了80.3-82.2%的活力,相应的保护系数超过160倍(80.3% vs. 0.5%)。球形培养对GS的抗性略高;游离GS使活力降低至2.9%,而脂质体GS使活力保持在84.8%以上,这取决于脂质组成。结论:脂质体包封有效地降低了gs诱导的细胞毒性,可能是通过限制直接的膜破坏。此外,球形模型为毒性测试提供了一个更具生理学相关性和预测性的平台,而研究结果支持纳米脂质体作为一种实用的递送策略,在临床前开发过程中提高抗菌肽的安全性。
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引用次数: 0
Clinical Outcomes and Healthcare Resource Utilization of Ceftolozane/Tazobactam in Vulnerable Patient Populations. 头孢唑烷/他唑巴坦在弱势患者群体中的临床疗效和医疗资源利用
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.3390/antibiotics15020179
Emre Yücel, Alex Soriano, Florian Thalhammer, Stefan Kluge, Mike Allen, Jessica Levy, Huina Yang, Sunny Kaul

Background: AMR is a public health concern which leads to high global morbidity and mortality. Immunocompromised patients, who are more susceptible to contracting potentially life-threatening infections, are faced with reduced treatment options due to emerging AMR. Ceftolozane/tazobactam is a novel β-lactam/β-lactamase inhibitor which displays effectiveness against resistant Gram-negative infections. Methods: SPECTRA was a multinational, observational study conducted in seven countries including 617 patients who received ≥48 h of ceftolozane/tazobactam. Medical-record data were collected up to 6 months before treatment and 30 days after the final dose or until death. This analysis describes clinical outcomes and healthcare resource use in patients with sepsis or who were immunocompromised, specifically in patients with hematologic malignancy with and without solid tumor, febrile neutropenia, and solid organ transplant patients. Results: Clinical success ranged from 50.0% in patients with hematologic malignancy and solid tumor to 69.4% in 38 patients with febrile neutropenia. All-cause in-hospital mortality was 23.1-42.9%, with the lowest rates in patients with solid organ transplant. ICU admission was 46.4-68.2% across subpopulations (excluding febrile neutropenia) with the lowest rates in patients with hematologic malignancy. ICU length of stay was lowest within transplant patients (9 days) and highest within the hematologic malignancy and solid tumor population (32 days). Conclusions: The results from this sub analysis of SPECTRA showed that ceftolozane/tazobactam was associated with clinical success in the selected immunocompromised and sepsis patient populations and may lead to reduced morbidity, mortality, and healthcare-resource use. Further research is required to standardize treatment protocols and improve patient outcomes.

背景:抗生素耐药性是一个公共卫生问题,导致全球高发病率和死亡率。免疫功能低下的患者更容易感染可能危及生命的感染,由于新出现的抗菌素耐药性,他们面临着减少治疗选择的问题。头孢唑烷/他唑巴坦是一种新型β-内酰胺/β-内酰胺酶抑制剂,对耐药革兰氏阴性感染具有有效的抑制作用。方法:SPECTRA是一项在7个国家进行的多国观察性研究,包括617名接受头孢唑烷/他唑巴坦治疗≥48小时的患者。医疗记录数据收集至治疗前6个月和末次给药后30天或直至死亡。本分析描述了脓毒症患者或免疫功能低下患者的临床结果和医疗资源使用情况,特别是伴有或不伴有实体瘤的血液恶性肿瘤患者、发热性中性粒细胞减少症患者和实体器官移植患者。结果:38例发热性中性粒细胞减少患者的临床成功率从血液恶性肿瘤和实体瘤患者的50.0%到69.4%不等。全因住院死亡率为23.1-42.9%,实体器官移植患者死亡率最低。各亚群(不包括发热性中性粒细胞减少症)的ICU住院率为46.4-68.2%,血液恶性肿瘤患者的住院率最低。ICU住院时间在移植患者中最短(9天),在血液恶性肿瘤和实体瘤患者中最长(32天)。结论:SPECTRA的亚分析结果显示,在选定的免疫功能低下和脓毒症患者群体中,头孢唑烷/他唑巴坦与临床成功相关,并可能导致发病率、死亡率降低和医疗资源使用减少。需要进一步的研究来规范治疗方案并改善患者的预后。
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引用次数: 0
Genomic Characterisation of Antibiotic-Resistant Escherichia coli from an Intensive Poultry Production System in the uMgungundlovu District, KwaZulu-Natal, South Africa: A Snapshot. 来自南非夸祖鲁-纳塔尔省uMgungundlovu地区集约化家禽生产系统的耐抗生素大肠杆菌的基因组特征:快照。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.3390/antibiotics15020174
Nelisiwe S Gumede, Joshua Mbanga, Charles Hunter, Melissa Ramtahal, Sabiha Y Essack, Linda A Bester

Background: Intensive poultry production systems can act as reservoirs for antibiotic-resistant and multidrug-resistant (MDR) Escherichia coli, posing a public health risk through food and environmental transmission. Methods: This study investigated the genomic characteristics of antibiotic-resistant E. coli isolated from an intensive poultry production system in the uMgungundlovu District, KwaZulu-Natal, South Africa. Chicken litter, wastewater, and floor swab samples were collected over three consecutive production cycles. Putative E. coli isolates were detected using the Colilert-18 system, cultured on eosin methylene blue agar, and genomically confirmed by quantitative PCR (q-PCR) targeting the uidA gene. Whole genome sequencing was performed using the Illumina MiSeq platform, followed by bioinformatic analyses to assess resistance genes, mobile genetic elements, and phylogenetic relationships. Results: Of 150 presumptive E. coli, 70 were genomically confirmed as E. coli and resistant to at least one antibiotic, with 74% exhibiting multidrug resistance. Resistance was highest to tetracycline (100%), ampicillin (94%), and trimethoprim-sulfamethoxazole (76%), while ciprofloxacin resistance was rare (3%). Genomic analysis identified multiple antibiotic resistance genes conferring resistance to fluoroquinolones, β-lactams, aminoglycosides, amphenicols, fosfomycin, and sulfonamides, as well as the disinfectant resistance gene qacI. These genes were frequently associated with mobile genetic elements, including plasmids, integrons, transposons, and insertion sequences. Predominant sequence types included ST155, ST48, ST1286, and ST602, with phylogenetic relatedness to poultry-associated isolates from Cameroon, Ghana, Nigeria, and Tanzania, as well as environmental E. coli strains previously identified in South Africa and Ghana. Conclusions: The detection of diverse, mobile MDR E. coli lineages in poultry environments clearly signals a substantial risk for resistance gene dissemination into the food chain and surrounding ecosystems. Immediate attention and intervention are warranted to mitigate public health threats.

背景:集约化家禽生产系统可成为耐抗生素和耐多药大肠杆菌(MDR)的宿主,通过食物和环境传播构成公共卫生风险。方法:本研究调查了从南非夸祖鲁-纳塔尔省uMgungundlovu地区集约化家禽生产系统中分离出的耐抗生素大肠杆菌的基因组特征。在连续三个生产周期内收集鸡粪、废水和地板拭子样本。使用Colilert-18系统检测推定的大肠杆菌分离株,在伊红亚甲基蓝琼脂上培养,并通过针对uidA基因的定量PCR (q-PCR)进行基因组鉴定。使用Illumina MiSeq平台进行全基因组测序,然后进行生物信息学分析以评估抗性基因,移动遗传元件和系统发育关系。结果:在150例推定的大肠杆菌中,70例经基因组学证实为大肠杆菌并对至少一种抗生素耐药,其中74%表现出多药耐药。耐药性最高的是四环素(100%)、氨苄西林(94%)和甲氧苄啶-磺胺甲恶唑(76%),而环丙沙星耐药性罕见(3%)。基因组分析确定了对氟喹诺酮类药物、β-内酰胺类药物、氨基糖苷类药物、霉素类药物、磷霉素类药物和磺胺类药物以及消毒剂耐药基因qacI具有耐药性的多种抗生素耐药基因。这些基因通常与可移动的遗传元件相关,包括质粒、整合子、转座子和插入序列。主要序列类型包括ST155、ST48、ST1286和ST602,与喀麦隆、加纳、尼日利亚和坦桑尼亚的禽类相关分离株以及之前在南非和加纳发现的环境大肠杆菌菌株具有系统发育亲缘关系。结论:在家禽环境中检测到多种多样的、可移动的耐多药大肠杆菌谱系清楚地表明,耐药基因传播到食物链和周围生态系统的风险很大。必须立即予以关注和干预,以减轻公共卫生威胁。
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引用次数: 0
Cost Analysis of the Belgian National Antimicrobial Resistance Monitoring in Livestock: Effects on Sampling Design and Statistical Performance. 比利时国家家畜抗菌素耐药性监测的成本分析:对抽样设计和统计性能的影响。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.3390/antibiotics15020172
Maria Eleni Filippitzi, Adrien de Fraipont, Mickaël Cargnel, Céline Guillaume, Jean Baptiste Hanon

Background/objectives: As part of the European Union's harmonized monitoring framework, Belgium conducts antimicrobial resistance (AMR) monitoring in commensal bacteria from livestock. The aim of this study was to conduct a cost analysis of the national AMR monitoring in livestock, and to explore sampling size scenarios in relation to their associated costs and statistical performance (power and confidence) of monitoring.

Methods: To our knowledge, this is the first published cost evaluation using unit cost aggregation of a national AMR monitoring program in animals.

Results: The testing of the different sample size scenarios showed that if the sample size increases, the costs increase linearly. A sample size increase of 10 samples/isolates (e.g., from 170 to 180) can increase the yearly total costs per animal species by 5.2%. Moreover, the testing of the different scenarios showed that if the sample size increases, the power and the confidence level also increase, providing a higher level of trust in the results of the monitoring program. The highest total monitoring costs per animal category were estimated for fattening pigs, broilers and veal calves (over 18% of total costs each, using 2024 data). Among the various monitoring activities, antimicrobial susceptibility testing emerged as the costliest component, representing 50.2% of the total monitoring costs.

Conclusions: The approach presented allows it to be used by other countries aiming to estimate the cost of their national AMR monitoring in animals or other similar activities. This economic and scenario testing analysis can be used to suggest informed suggestions to improve AMR monitoring in animals.

背景/目标:作为欧盟统一监测框架的一部分,比利时对来自牲畜的共生细菌进行抗菌素耐药性(AMR)监测。本研究的目的是对国家牲畜抗菌素耐药性监测进行成本分析,并探讨与监测的相关成本和统计性能(功率和置信度)相关的样本量方案。方法:据我们所知,这是首次发表的使用单位成本汇总的国家动物抗菌素耐药性监测项目的成本评估。结果:不同样本量情景的检验表明,样本量增加,成本呈线性增加。每增加10个样本/分离株(例如,从170个增加到180个),每个动物物种的年总成本就会增加5.2%。此外,对不同场景的测试表明,如果样本量增加,则功率和置信度也会增加,从而对监测程序的结果提供更高的信任度。根据2024年的数据,肥猪、肉鸡和小牛肉的每种动物类别的监测总成本估计最高(占每种动物总成本的18%以上)。在各种监测活动中,抗菌药物敏感性试验是最昂贵的组成部分,占监测总费用的50.2%。结论:所提出的方法可被其他国家用于估计其国家动物抗菌素耐药性监测或其他类似活动的成本。这种经济和情景测试分析可用于提出明智的建议,以改进动物抗菌素耐药性监测。
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引用次数: 0
Acquisition Origin Matters: Clinical, Microbiological and Immunological Characteristics and Treatment Effects in Community- vs. Hospital-Acquired Septic Shock. 感染来源:社区获得性感染性休克与医院获得性感染性休克的临床、微生物学和免疫学特征及治疗效果。
IF 4.6 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.3390/antibiotics15020169
Irene Coloretti, Martina Tosi, Emanuela Biagioni, Federica Morselli, Elena Munari, Jacopo Bertolini, Sara Ferrari, Marianna Meschiari, Erica Franceschini, Nathan D Nielsen, Stefano Busani, Massimo Girardis

Background: Septic shock is a leading cause of mortality worldwide, with community-acquired (CA) and hospital-acquired (HA) infections representing distinct clinical entities. The differences in clinical characteristics, immune response profiles, and effects of sepsis treatments between CA and HA septic shock have not been fully elucidated. Methods: This retrospective cohort study included 726 adults with septic shock who were admitted to two ICUs at Modena University Hospital between January 2006 and September 2024. Patients were classified as having CA or HA septic shock based on the origin of the infection. Clinical, microbiological, and immunological data, treatments, and outcomes were analysed. Immune cell dynamics were assessed during the first week after the onset of the shock. Multivariable Cox regression models were used to identify predictors and the effects of treatment on ICU mortality. Results: Among 344 patients with CA and 382 with HA septic shock, those with CA had higher severity scores but lower ICU and in-hospital mortality. Patients with HA exhibited a higher prevalence of multidrug-resistant organisms and more comorbidities. Immunologically, CA survivors showed increasing lymphocyte counts over time, whereas HA survivors mainly demonstrated recovery in T helper cells. Therapeutic strategies were similar between groups; however, continuous renal replacement therapy was more frequent in patients with HA. Neither appropriate empiric antibiotics nor steroids or immunoglobulin therapy independently improved mortality in the multivariate analyses. Conclusions: CA and HA septic shock differ significantly in terms of clinical severity, microbiological aetiology, immune recovery patterns, and outcomes. The lack of mortality benefit from standard treatments highlights the need for personalised management strategies that integrate clinical, immunological, and microbiological data to optimise care in septic shock subpopulations.

背景:脓毒性休克是世界范围内死亡的主要原因,社区获得性(CA)和医院获得性(HA)感染代表不同的临床实体。CA和HA感染性休克的临床特征、免疫反应谱和脓毒症治疗效果的差异尚未完全阐明。方法:本回顾性队列研究纳入了2006年1月至2024年9月期间入住摩德纳大学医院两个icu的726例感染性休克成人患者。根据感染的来源将患者分为CA或HA感染性休克。分析了临床、微生物学和免疫学数据、治疗方法和结果。在休克发生后的第一周内评估免疫细胞动力学。采用多变量Cox回归模型确定预测因素和治疗对ICU死亡率的影响。结果:在344例CA患者和382例HA脓毒性休克患者中,CA患者的严重程度评分较高,但ICU和住院死亡率较低。HA患者表现出更高的多药耐药菌患病率和更多的合并症。免疫方面,随着时间的推移,CA幸存者的淋巴细胞计数增加,而HA幸存者主要表现为T辅助细胞的恢复。两组间治疗策略相似;然而,持续肾脏替代治疗在HA患者中更为常见。在多变量分析中,适当的经验性抗生素、类固醇或免疫球蛋白治疗都不能单独改善死亡率。结论:CA和HA感染性休克在临床严重程度、微生物病因、免疫恢复模式和结局方面存在显著差异。标准治疗缺乏死亡率益处,这突出了个性化管理策略的必要性,该策略应整合临床、免疫学和微生物学数据,以优化感染性休克亚群的护理。
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引用次数: 0
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Antibiotics-Basel
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