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AI-driven transcriptomic biomarker discovery for early identification of pediatric deterioration in Acute Care 人工智能驱动的转录组生物标志物发现用于儿科急性护理恶化的早期识别。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-29 DOI: 10.1016/j.slast.2025.100357
Qing Wang , Lina Sun , Wei Meng , Chen Chen
Early detection of juvenile clinical deterioration in acute care settings remains a significant problem in modern healthcare. This paper presents an AI-powered predictive analytics platform that combines transcriptome biomarker signals with structured vital signs, laboratory data, and unstructured clinical notes to improve early warning capabilities. The system uses ClinicalBERT to extract insights from clinical narratives, XGBoost to analyze tabular clinical information, and long short-term memory (LSTM) networks to simulate temporal dynamics. A meta-classifier combines multimodal data to produce real-time risk ratings for clinical deterioration. The performance evaluation utilizing five-fold cross-validation showed great accuracy, with an AUROC of 0.91, AUPRC of 0.83, and an average early warning lead time of 5.6 hours. Predictive markers included higher lactate levels, heart rate patterns, SpO₂ variability, and transcriptome signals indicating systemic inflammatory activation. Ablation investigations proved the importance of multimodal data fusion in increasing prediction robustness. The suggested strategy provides a scalable, interpretable, and high-performing hospital integration system that enables biomarker-informed, precision-based pediatric intervention options.
早期发现青少年临床恶化在急性护理设置仍然是现代医疗保健的一个重大问题。本文介绍了一种基于人工智能的预测分析平台,该平台将转录组生物标志物信号与结构化生命体征、实验室数据和非结构化临床记录相结合,以提高早期预警能力。该系统使用ClinicalBERT从临床叙述中提取见解,使用XGBoost分析表格临床信息,使用长短期记忆(LSTM)网络模拟时间动态。meta分类器结合多模态数据产生临床恶化的实时风险评级。使用五重交叉验证的性能评估显示出很高的准确性,AUROC为0.91,AUPRC为0.83,平均预警提前时间为5.6小时。预测指标包括较高的乳酸水平、心率模式、SpO₂可变性和指示全身炎症激活的转录组信号。消融研究证明了多模态数据融合在提高预测稳健性方面的重要性。建议的策略提供了一个可扩展的、可解释的、高性能的医院集成系统,使生物标志物知情、基于精确的儿科干预选择成为可能。
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引用次数: 0
The RoboSeed facilitates automated extraction of cereal mature embryos RoboSeed有助于谷物成熟胚胎的自动提取。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-22 DOI: 10.1016/j.slast.2025.100355
R. Berenstein , V. Bloch , A. Beery , M.R. Prusty , J. Awwad , O. Amir-Segev , S. Miterani , M. Barak , G. Lidor , E. Fridman
To overcome a critical bottleneck in plant biotechnology workflows, a semiautomated system RoboSeed was developed to extract mature embryos from cereal grains such as barley. In contrast to the commonly used manual extraction, the robot employs a precision-controlled pressing rod which applies mechanical force along an optimal trajectory and angle to detach intact embryos. A custom image-processing pipeline determines grain orientation and morphology, enabling precise rod alignment at the optimal force application point. Validation experiments using two barley cultivars (Noga and Golden Promise) and soaking duration of 10 and 20 h revealed optimal force application point relative location in the range 0.5–0.6, achieving maximum extraction success rates of 56.2 % (Noga) and 36 % (GP) after 20 h soaking. RoboSeed operated with a median cycle time of 20.9 s per extraction, translating to 37.2 s per successful embryo, compared to 27.9 s with expert manual extraction. While current throughput is lower than conventional methods, RoboSeed offers significant advantages in consistency, reduced reliance on operator skill, and potential for scaling. Future improvements include full automation of grain singulation, robotic arms for post-extraction handling, and expanded testing across additional genotypes. RoboSeed’s modular design provides a robust foundation for scalable, high-throughput embryo extraction, with potential to accelerate cereal transformation, gene mapping studies, and tissue culture-based research.
为了克服植物生物技术工作流程中的一个关键瓶颈,开发了一种半自动系统RoboSeed,用于从谷物(如大麦)中提取成熟胚胎。与常用的人工提取不同,该机器人采用精密控制的压杆,沿着最佳的轨迹和角度施加机械力来分离完整的胚胎。定制的图像处理管道确定晶粒方向和形态,从而在最佳施力点实现精确的杆对齐。以Noga和Golden Promise两种大麦品种为研究对象,浸泡时间分别为10和20 h,结果表明,最佳施力点相对位置在0.5 ~ 0.6范围内,浸泡20 h后提取成功率分别为56.2% (Noga)和36% (GP)。RoboSeed每次提取的平均周期时间为20.9秒,每个成功胚胎的平均周期时间为37.2秒,而专家人工提取的平均周期时间为27.9秒。虽然目前的吞吐量低于传统方法,但RoboSeed在一致性,减少对操作人员技能的依赖以及扩展潜力方面具有显着优势。未来的改进包括谷物模拟的全自动、提取后处理的机械臂,以及对其他基因型的扩展测试。RoboSeed的模块化设计为可扩展、高通量的胚胎提取提供了坚实的基础,具有加速谷物转化、基因定位研究和组织培养研究的潜力。
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引用次数: 0
Application of high-resolution magnetic resonance imaging (MRI) in the evaluation of acupuncture effects in traditional Chinese medicine 高分辨率磁共振成像(MRI)在中医针灸疗效评价中的应用。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-19 DOI: 10.1016/j.slast.2025.100349
Yujiao Zhang , Zijiao Yang , Shuhua Huang , Sujiao Sun , Zhuxian Liang
In the evaluation of acupuncture effects in traditional Chinese medicine (TCM), the unclear interpretation of microscopic mechanisms and the difficulty in verifying acupoint specificity due to insufficient resolution of MRI (Magnetic Resonance Imaging) are the main reasons for the difficulty. This paper adopts 7T ultra-high field MRI combined with dynamic ASL (arterial spin labeling) technology, taking advantage of its high spatial resolution and quantitative blood perfusion imaging, to achieve dynamic visualization of microcirculation at acupuncture points in patients with ulcerative colitis. Ulcerative colitis is an ideal site to verify the feasibility of this method because its lesion site is clear and easy to correspond with the body surface acupoint. This paper establishes a high-resolution imaging protocol based on 7T magnetic resonance imaging, adopts 0.5mm spatial resolution, and optimizes scanning parameters to adapt to the microstructural imaging requirements of the acupoint area. This paper introduces pCASL (pseudo-continuous arterial spin labeling) technology, sets the labeling duration and perfusion delay time, captures the changes in perfusion volume before and after acupuncture over time, and obtains a dynamic perfusion sequence. This paper adopts umbilical moxibustion therapy, selects specific meridian acupoints, sets a standard acupuncture stimulation scheme (needle insertion depth, frequency, and needle retention time), and simultaneously performs MRI scanning to achieve real-time acupuncture imaging acquisition. The acquired multi-time point images can be rigidly registered and mapped with standard templates, the blood flow intensity change curve of the acupuncture-related area can be extracted, and the time-perfusion function can be constructed to analyze the local response pattern. The experimental results show that the ΔCBF (Delta Cerebral Blood Flow) of 7T-ASL at Shenque, Tianshu and Zhongwan are 0.15, 0.12 and 0.18 respectively, and it has high sensitivity in capturing tiny blood flow changes under sub-millimeter resolution. The SNR (Signal-to-Noise Ratio) at Shenque, Tianshu and Zhongwan are 22, 25 and 24 respectively, and the CNR (Contrast-to-Noise Ratio) is 6.2, 6.5 and 6.7 respectively, which has significant advantages in the spatial identification of sensitive areas of neural regulation and the identification of perfusion response. The average rising rate, peak time and recovery time in all acupoints were 2.44%/s, 7.2s and 11.5s respectively, and the acupuncture effect took effect faster in local areas.
在中医针灸疗效评价中,显微机制解释不清,且由于MRI(磁共振成像)分辨率不够难以验证穴位特异性,是造成评价困难的主要原因。本文采用7T超高场MRI结合动态ASL(动脉自旋标记)技术,利用其高空间分辨率和定量血液灌注成像的优势,实现溃疡性结肠炎患者穴位微循环的动态可视化。溃疡性结肠炎因其病变部位清晰,易于与体表穴位对应,是验证该方法可行性的理想部位。本文建立了基于7T磁共振成像的高分辨率成像方案,采用0.5mm空间分辨率,并优化扫描参数,以适应穴位区域的微结构成像要求。本文引入pCASL(伪连续动脉自旋标记)技术,设置标记时间和灌注延迟时间,捕捉针刺前后灌注量随时间的变化,得到动态灌注序列。本文采用脐灸疗法,选择特定经络穴位,设定标准针刺刺激方案(插针深度、频率、留针时间),同时进行MRI扫描,实现实时针刺成像采集。对获取的多时间点图像进行严格配准和标准模板映射,提取针灸相关区域血流强度变化曲线,构建时间灌注函数分析局部反应模式。实验结果表明,7T-ASL在神雀、天树和中湾的ΔCBF (Delta Cerebral Blood Flow)分别为0.15、0.12和0.18,在亚毫米分辨率下对微小血流变化的捕捉具有很高的灵敏度。神雀、天树和中湾的信噪比分别为22、25和24,CNR分别为6.2、6.5和6.7,在神经调节敏感区域的空间识别和灌注反应识别方面具有显著优势。各穴位的平均上升速率、峰值时间和恢复时间分别为2.44%/s、7.2s和11.5s,局部见效较快。
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引用次数: 0
Cognitive evaluation model and high-resolution medical images in sports injury rehabilitation under bone density changes 骨密度变化下运动损伤康复的认知评价模型和高分辨率医学图像。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-19 DOI: 10.1016/j.slast.2025.100350
Wenping Li , Zhiming Gu
In the study of bone density changes and sports injury rehabilitation, traditional image processing technology lacks accuracy in analysis, rehabilitation assessment methods lack quantitative and systematic analysis, and interdisciplinary comprehensive evaluation is lacking. This paper constructs an innovative cognitive assessment model that combines bone density changes, sports injury rehabilitation, and high-resolution medical image analysis. It uses high-resolution CT (Computed Tomography) images and X-ray images to extract bone density data. It uses image processing technology to remove noise, enhance, and standardize, providing accurate bone density values for subsequent input. GCN (Graph Convolutional Network) can be used to automatically identify and classify images of sports injury sites, extract features of the injured area, record and analyze the patient's physical activities during the rehabilitation stage, and evaluate the recovery process of sports injuries in real time. Combining bone density data with sports injury imaging features, XGBoost (Extreme Gradient Boosting) is used to build a cognitive evaluation model, which conducts a comprehensive analysis of multi-dimensional data and provides personalized rehabilitation evaluation. It can integrate technologies from fields such as medicine, engineering, and computer science to establish an interdisciplinary comprehensive evaluation system, achieve multi-angle and multi-dimensional analysis, and ensure the comprehensiveness and accuracy of the model. The experimental results show that the MAE (Mean Absolute Error) of the GCN in this paper is 0.131 in 10 different injury sites, and the average MSE (Mean Squared Error) is about 0.032, which has higher image analysis accuracy. The average accuracy and R² of XGBoost in six different samples are about 0.87 and 0.91, respectively, and the prediction effect of the cognitive evaluation model is apparent.
在骨密度变化与运动损伤康复的研究中,传统的图像处理技术在分析上缺乏准确性,康复评估方法缺乏定量和系统的分析,缺乏跨学科的综合评价。本文构建了一种结合骨密度变化、运动损伤康复和高分辨率医学图像分析的创新性认知评估模型。它使用高分辨率CT(计算机断层扫描)图像和x射线图像提取骨密度数据。它采用图像处理技术去噪、增强、标准化,为后续输入提供准确的骨密度值。GCN (Graph Convolutional Network)可以对运动损伤部位的图像进行自动识别和分类,提取损伤区域的特征,记录和分析患者在康复阶段的身体活动,实时评估运动损伤的恢复过程。结合骨密度数据和运动损伤影像特征,利用XGBoost (Extreme Gradient Boosting)构建认知评价模型,对多维数据进行综合分析,提供个性化康复评估。它可以整合医学、工程、计算机科学等领域的技术,建立跨学科的综合评价体系,实现多角度、多维度的分析,保证模型的全面性和准确性。实验结果表明,本文GCN在10个不同损伤部位的MAE (Mean Absolute Error)为0.131,平均MSE (Mean Squared Error)约为0.032,具有较高的图像分析精度。XGBoost在6个不同样本上的平均准确率和R²分别约为0.87和0.91,认知评价模型的预测效果明显。
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引用次数: 0
Construction of a nomogram prediction model for screening of serum markers for lower extremity vasculopathy secondary to type 2 diabetes mellitus 2型糖尿病继发下肢血管病变血清标志物Nomogram预测模型的建立
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-19 DOI: 10.1016/j.slast.2025.100352
Jingjing Yang , Jinyan Chen , Lanying Shen

Objective

To screen serum markers for secondary lower extremity angiopathy (LEAD) in patients with type 2 diabetes mellitus (T2DM) and construct a nomogram prediction model accordingly.

Methods

The clinical data of 200 T2DM patients admitted to the hospital from December 2022 to October 2024 were retrospectively collected. It was also divided into modeling group (n = 160) and internal validation group (n = 40) in a 4:1 ratio by using the leave-out method. As the external validation group, clinical data from 100 T2DM patients who were admitted to other hospitals within the same time period were also gathered. Combined with previous reports of collecting serum marker data related to LEAD secondary to T2DM, key serum markers were screened using LASSO regression. Moreover, multifactorial analysis helped to clarify independent risk factors, and a nomogram prediction model was built and tested for accuracy.

Results

The incidence of LEAD in 200 T2DM patients in the hospital was 21.00 % (42/200). A total of 14 variables were screened by LASSO regression analysis. After multifactorial analysis, it was found that disease duration, history of alcohol consumption, mean platelet volume, fasting blood glucose, fibrinogen, high-sensitivity C-reactive protein, insulin-like growth factor 1, nucleotide binding oligomerization domain like receptor protein 3 were independent risk factors for LEAD secondary to T2DM.The results of model validation showed AUCs of 0.971, 0.900, and 0.959 for the modeling cohort, internal validation cohort, and external validation cohort, respectively. The Hosmer-Lemeshow test was χ2=6.607, 7.962, and 6.585 (p > 0.05). Positive net benefits were obtained by intervening with patients using a nomogram model within the high-risk threshold of 0 to 0.9.

Conclusion

In this study, eight risk factors associated with LEAD secondary to T2DM are screened by LASSO regression and multifactorial analysis, and a nomogram prediction model is constructed.
目的:筛选2型糖尿病(T2DM)患者继发性下肢血管病变(LEAD)的血清标志物,并建立相应的nomogram预测模型。方法:回顾性收集2022年12月至2024年10月我院收治的200例T2DM患者的临床资料。采用省略法将其按4:1的比例分为建模组(n=160)和内部验证组(n=40)。作为外部验证组,收集同期在其他医院住院的100例T2DM患者的临床资料。结合以往报告收集的与T2DM继发铅相关的血清标志物数据,使用LASSO回归筛选关键血清标志物。此外,多因素分析有助于明确独立的危险因素,并建立了一个nomogram预测模型,并对其准确性进行了检验。结果:该院200例T2DM患者中铅的发生率为21.00%(42/200)。LASSO回归分析共筛选了14个变量。经多因素分析,发现病程、饮酒史、平均血小板体积、空腹血糖、纤维蛋白原、高敏c反应蛋白、胰岛素样生长因子1、核苷酸结合寡聚化结构域样受体蛋白3是T2DM继发铅的独立危险因素。模型验证结果显示,建模队列、内部验证队列和外部验证队列的auc分别为0.971、0.900和0.959。Hosmer-Lemeshow检验的χ2分别为6.607、7.962、6.585 (p < 0.05)。使用nomogram模型在0 - 0.9的高风险阈值范围内对患者进行干预,获得了正的净收益。结论:本研究通过LASSO回归和多因素分析筛选出8个与2型糖尿病继发铅相关的危险因素,并构建了nomogram预测模型。
{"title":"Construction of a nomogram prediction model for screening of serum markers for lower extremity vasculopathy secondary to type 2 diabetes mellitus","authors":"Jingjing Yang ,&nbsp;Jinyan Chen ,&nbsp;Lanying Shen","doi":"10.1016/j.slast.2025.100352","DOIUrl":"10.1016/j.slast.2025.100352","url":null,"abstract":"<div><h3>Objective</h3><div>To screen serum markers for secondary lower extremity angiopathy (LEAD) in patients with type 2 diabetes mellitus (T2DM) and construct a nomogram prediction model accordingly.</div></div><div><h3>Methods</h3><div>The clinical data of 200 T2DM patients admitted to the hospital from December 2022 to October 2024 were retrospectively collected. It was also divided into modeling group (<em>n</em> = 160) and internal validation group (<em>n</em> = 40) in a 4:1 ratio by using the leave-out method. As the external validation group, clinical data from 100 T2DM patients who were admitted to other hospitals within the same time period were also gathered. Combined with previous reports of collecting serum marker data related to LEAD secondary to T2DM, key serum markers were screened using LASSO regression. Moreover, multifactorial analysis helped to clarify independent risk factors, and a nomogram prediction model was built and tested for accuracy.</div></div><div><h3>Results</h3><div>The incidence of LEAD in 200 T2DM patients in the hospital was 21.00 % (42/200). A total of 14 variables were screened by LASSO regression analysis. After multifactorial analysis, it was found that disease duration, history of alcohol consumption, mean platelet volume, fasting blood glucose, fibrinogen, high-sensitivity C-reactive protein, insulin-like growth factor 1, nucleotide binding oligomerization domain like receptor protein 3 were independent risk factors for LEAD secondary to T2DM.The results of model validation showed AUCs of 0.971, 0.900, and 0.959 for the modeling cohort, internal validation cohort, and external validation cohort, respectively. The Hosmer-Lemeshow test was <em>χ<sup>2</sup></em>=6.607, 7.962, and 6.585 (<em>p</em> &gt; 0.05). Positive net benefits were obtained by intervening with patients using a nomogram model within the high-risk threshold of 0 to 0.9.</div></div><div><h3>Conclusion</h3><div>In this study, eight risk factors associated with LEAD secondary to T2DM are screened by LASSO regression and multifactorial analysis, and a nomogram prediction model is constructed.</div></div>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":"35 ","pages":"Article 100352"},"PeriodicalIF":3.7,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145115029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Low code, high impact: Application of low-code platforms to enable and democratize the development of laboratory digitalization and automation applications 低代码,高影响:低代码平台的应用,使实验室数字化和自动化应用的发展民主化。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-19 DOI: 10.1016/j.slast.2025.100353
Jonas Austerjost , Elias Knöchelmann , Thomas Kruse , Janina Kilian , Bastian Quaas , Michael W. Olszowy
Conventionally, the initialization of new prototypes and concepts in laboratory automation and life science software applications has required close collaboration between hardware and software experts, as well as lab personnel such as biologists, chemists, biotechnologists, or process engineers. This setup - still common today - often means that the ideas and requests of lab personnel must be translated into software applications by software developers, which frequently results in long development times. Low-Code Development Platforms (LCDPs) seek to address this challenge by providing a way to accelerate application development by reducing dependence on traditional software development methods, empowering lab personnel to build applications without writing extensive amount of code. By offering a visual, drag-and-drop interface, lab personnel can actively participate in the software development process. This helps democratize application creation and can lead to the quick setup of software solutions tailored to laboratory needs.
This study demonstrates the implementation of four different use cases in a bioprocessing laboratory environment using an open-source LCDP and commercially available upstream and downstream equipment. The LCDP facilitated the integration and control of different device types with varying communication protocols also enabling dashboarding, monitoring and data processing capabilities. This methodology highlights the suitability of LCDPs for rapidly prototyping and evaluating laboratory and bioprocess automation pipelines, potentially expediting the development of biotechnological production processes and products. All developed components are made available through a publicly accessible repository, facilitating reuse and further development by the scientific community.
通常,在实验室自动化和生命科学软件应用中,新原型和概念的初始化需要硬件和软件专家之间的密切合作,以及生物学家、化学家、生物技术专家或过程工程师等实验室人员。这种设置——今天仍然很常见——通常意味着实验室人员的想法和要求必须由软件开发人员转化为软件应用程序,这经常导致较长的开发时间。低代码开发平台(LCDPs)通过提供一种方法来减少对传统软件开发方法的依赖,从而加速应用程序开发,使实验室人员无需编写大量代码即可构建应用程序,从而寻求解决这一挑战。通过提供可视化的拖放界面,实验室人员可以积极地参与软件开发过程。这有助于实现应用程序创建的民主化,并可以快速设置适合实验室需求的软件解决方案。本研究演示了在生物处理实验室环境中使用开源LCDP和商用上游和下游设备的四种不同用例的实现。通过不同的通信协议,LCDP促进了不同设备类型的集成和控制,还实现了仪表板、监控和数据处理功能。该方法强调了LCDPs用于快速原型设计和评估实验室和生物过程自动化管道的适用性,潜在地加快了生物技术生产过程和产品的开发。所有开发的组件都可以通过一个公开访问的存储库获得,从而促进科学界的重用和进一步开发。
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引用次数: 0
Single-step purification and formulation of antibody-drug conjugates using a miniaturized tangential flow filtration system 使用小型切向流过滤系统的抗体-药物偶联物单步纯化和配方
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-19 DOI: 10.1016/j.slast.2025.100351
Muhammad Sajed , Zahoor Khan , Muhammad Usman Ashraf , Hafsa Iftikhar , Talha Bin Rahat , Samia Falak , Salman Fozail , Quiterie Gue , Raul Pardo , Lance Ramsey , Muhammad Saqib Shahzad
Antibody-drug conjugates (ADCs) are a promising therapeutic modality that enables the delivery of cytotoxic drugs to the target cells that express the corresponding antigen. However, the purification of ADCs while ensuring product safety, homogeneity, and stability is a challenging task due to their complex and fragile structure. Size exclusion chromatography (SEC), the conventional method for ADC purification, is time-consuming as it requires multiple column washes and equilibration steps. Moreover, subsequent formulation of ADCs, typically using dead-end filtration (DEF), further complicates the production workflow. We compared SEC+DEF with the µPulse®, a miniaturized and automated tangential flow filtration system, for purification and formulation of ADCs. Quality analysis revealed that both approaches were equally gentle as comparable drug-to-antibody ratios (DARs) and monomer purities were observed in the purified samples. Most importantly, both methods exhibited equivalent cleanup efficiency with a 99.8% reduction in free linker-drug concentration. The endotoxin loads comprised 0.11 EU mg-1 for the µPulse and 0.07 EU mg-1 for SEC+DEF, ensuring validation of the safe application of purified ADCs in living systems. However, the µPulse performed purification and formulation of ADCs simultaneously as compared to SEC+DEF, which required multiple manual interventions. Our results indicate that the µPulse is a gentle, single-step, and walk-away approach for the purification of ADCs.
抗体-药物偶联物(adc)是一种很有前途的治疗方式,可以将细胞毒性药物传递到表达相应抗原的靶细胞。然而,由于adc结构复杂和脆弱,在保证产品安全性、均匀性和稳定性的同时进行纯化是一项具有挑战性的任务。粒径排除色谱法(SEC)是ADC的常规纯化方法,由于需要多次清洗柱和平衡步骤,因此非常耗时。此外,adc的后续配方通常使用终端过滤(DEF),这进一步复杂化了生产流程。我们将SEC+DEF与µPulse®进行了比较,µPulse®是一种小型化、自动化的切向流过滤系统,用于adc的纯化和配方。质量分析表明,这两种方法都同样温和,因为在纯化的样品中观察到类似的药物-抗体比率(dar)和单体纯度。最重要的是,两种方法的清除效率相当,游离连接剂浓度降低99.8%。µPulse的内毒素负荷为0.11 EU mg-1, SEC+DEF的内毒素负荷为0.07 EU mg-1,确保了纯化adc在生命系统中的安全应用。然而,与SEC+DEF相比,µPulse可以同时进行adc的纯化和配制,后者需要多次人工干预。我们的研究结果表明,µPulse是一种温和的、单步的、走开的adc纯化方法。
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引用次数: 0
IoT-based approach for diabetes patient monitoring using machine learning 基于物联网的糖尿病患者机器学习监测方法
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-13 DOI: 10.1016/j.slast.2025.100348
Sarra Ayouni , Muhammad Hamza Khan , Muhammad Ibrahim , Mohamed Maddeh , Nadeem Sarwar , Nazik Alturki
This study presents an IoT-based framework for real-time diabetes monitoring and management, addressing key limitations identified in previous studies by integrating four datasets: BVH Dataset, PIMA Diabetes Dataset, Simulated Dataset, and an Integrated Dataset. The proposed approach ensures diverse demographic representation and a wide range of features including real-time vital signs (e.g., oxygen saturation, pulse rate, temperature) and subjective variables (e.g., skin color, moisture, consciousness level). Advanced preprocessing techniques, including Kalman Filtering for noise reduction, KNN imputation for addressing missing data, and SMOTE-ENN for improving data quality and class balance, were employed. These methods resulted in a 25 % improvement in Recall and a 20 % increase in the F1-score, demonstrating the model's effectiveness and robustness.
By applying PCA and SHAP for feature engineering, high-impact features were identified, enabling the tuning of models such as Random Forest, SVM, and Logistic Regression, which achieved an accuracy of 97 % and an F1-score of 0.98. A novel triage system, integrated with edge and cloud computing, classifies health status in real-time (Green, Yellow, Red, Black), reducing latency by 35 %. The proposed system sets a new benchmark for scalable, individualized diabetes care in IoT-based healthcare solutions, demonstrating significant improvements in accuracy, response time, and feature incorporation compared to prior works.
本研究提出了一个基于物联网的糖尿病实时监测和管理框架,通过整合四个数据集:BVH数据集、PIMA糖尿病数据集、模拟数据集和集成数据集,解决了先前研究中发现的关键局限性。所提出的方法确保了多样化的人口统计学表征和广泛的特征,包括实时生命体征(例如,氧饱和度、脉搏率、温度)和主观变量(例如,肤色、湿度、意识水平)。采用了先进的预处理技术,包括用于降噪的卡尔曼滤波,用于寻寻缺失数据的KNN输入,以及用于提高数据质量和类平衡的SMOTE-ENN。这些方法使召回率提高了25%,f1得分提高了20%,证明了模型的有效性和稳健性。通过应用PCA和SHAP进行特征工程,识别出高影响特征,实现随机森林、支持向量机和Logistic回归等模型的调优,准确率达到97%,f1得分为0.98。一种新型的分类系统,集成了边缘和云计算,实时分类健康状态(绿色、黄色、红色、黑色),减少了35%的延迟。该系统为基于物联网的医疗保健解决方案中可扩展的个性化糖尿病护理设定了新的基准,与之前的工作相比,在准确性、响应时间和功能整合方面有了显着改善。
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引用次数: 0
High-throughput cytokine detection platform for evaluation of chemical induced microglial activation 评价化学诱导的小胶质细胞活化的高通量细胞因子检测平台。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-10 DOI: 10.1016/j.slast.2025.100347
Shu Yang , Kelly E. Carstens , Ibukunoluwa Ipaye , Xing Chen , Helena T. Hogberg , Nicole Kleinstreuer , Thomas B. Knudsen , Menghang Xia
Environmental chemical exposure, such as pesticides and heavy metals, may contribute to neurodegenerative disorders through neuroinflammation. This study aims to identify suitable in vitro microglial models for assessing cytokine responses to potential neurotoxicants, particularly focusing on human induced pluripotent stem cell-derived microglia (hiMG). In this study, we evaluated the cytokine secretion profiles of four microglial cell types—hiMG, HMC3, IM-HM, and BV2—upon stimulation with lipopolysaccharides (LPS) using cytokine arrays. Our findings showed cytokine response patterns in hiMG cells that most closely resemble in vivo conditions, with significant increases in interleukin 6 (IL-6) and tumor necrosis factor-alpha (TNF-α) levels, the latter being uniquely expressed after LPS treatment. Consequently, we developed a homogeneous time-resolved fluorescence (HTRF) assay platform in a 1536-well plate format for high-throughput screening of environmental chemicals using hiMG cells. After LPS treatment, the assay window for secretion of IL-6 and TNF-α increased 3.71-fold and 2.62-fold over the vehicle control group, respectively, with respective EC50 values of approximately 50 ng/mL and 90 ng/mL for IL-6 and TNF-α. We also assessed the response activity of hiMG to other stimuli, including interferon gamma and various catecholamine compounds, and nine environmental chemicals with evidence of cytokine-inducing potential in other in vitro assays. While all nine tested agents stimulated IL-6 and TNF-α production, three compounds (e.g., picoxystrobin) showed significant stimulation of both cytokines. ​This study establishes a reliable high-throughput platform for detecting inflammatory effects of environmental toxicants in a microglial cell assay, contributing valuable insights into their neuroinflammatory potential and possible implications for neurodegenerative disorders.
环境中的化学物质暴露,如杀虫剂和重金属,可能通过神经炎症导致神经退行性疾病。本研究旨在确定合适的体外小胶质细胞模型,以评估细胞因子对潜在神经毒物的反应,特别是关注人诱导多能干细胞来源的小胶质细胞(hiMG)。在这项研究中,我们使用细胞因子阵列评估了四种小胶质细胞类型(himg, HMC3, IM-HM和bv2)在脂多糖(LPS)刺激下的细胞因子分泌谱。我们的研究结果显示,细胞因子在hiMG细胞中的反应模式与体内条件最相似,白细胞介素6 (IL-6)和肿瘤坏死因子α (TNF-α)水平显著升高,后者在LPS处理后唯一表达。因此,我们开发了1536孔板格式的均匀时间分辨荧光(htf)检测平台,用于使用hiMG细胞进行高通量筛选环境化学物质。LPS处理后,IL-6和TNF-α分泌的测定窗口分别比对照增加了3.71倍和2.62倍,IL-6和TNF-α的EC50值分别约为50 ng/mL和90 ng/mL。我们还评估了hiMG对其他刺激的反应活性,包括干扰素γ和各种儿茶酚胺化合物,以及在其他体外实验中具有细胞因子诱导潜力的九种环境化学物质。虽然所有九种被测试的药物都能刺激IL-6和TNF-α的产生,但三种化合物(如皮氧嘧啶)对这两种细胞因子都有显著的刺激作用。本研究建立了一个可靠的高通量平台,用于在小胶质细胞试验中检测环境毒物的炎症效应,为其神经炎症潜力和神经退行性疾病的可能含义提供了有价值的见解。
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引用次数: 0
Staining Triad: A fully automated and zero-waste flow cytometry staining system fostering the 3R to 4R transition 三合一染色:一个全自动和零浪费的流式细胞术染色系统,促进3R到4R的过渡。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-27 DOI: 10.1016/j.slast.2025.100345
Santosh Dhule , Eric Corriveau , Christopher Lepsy , Sophie Tourdot
Despite significant advances in instrumentation and robotics, the automation of cell staining in flow cytometry remains largely unaddressed. While sample acquisition in flow cytometry has been fully automated, sample staining continues to be a predominantly manual process—requiring substantial time, labor, and cost. Additionally, the repetitive nature of manual staining introduces monotony and increases the likelihood of human error. The Staining Triad presented here achieves full automation of the staining process, requiring only the input of samples and reagents, with no manual intervention. Staining performed using the Staining Triad showed a comparable biomarker profile to that of conventional manual staining. The modular and adaptable system design enables the flexibility to tailor throughput and accommodate assay-specific requirements, thereby extending its applicability to plate-based ligand binding assays. Moreover, the system eliminates the need for pipette tips, exemplifying a sophisticated and sustainable solution that enhances laboratory efficiency while reducing human error and the primary source of plastic waste in flow cytometry staining. Although 3R initiatives (Reduce, Reuse, Recycle) have helped decrease laboratory plastic waste volumes, substantial amounts are still incinerated or end up in landfills, where they persist in the environment for decades. This limitation underscores the need to incorporate a fourth R—"Remove/Replace"—into sustainability strategies. As flow cytometry becomes increasingly integral across various biotechnology disciplines, it is imperative to streamline associated workflows to accelerate drug discovery while preserving the environment that sustains life.
尽管在仪器和机器人技术方面取得了重大进展,但流式细胞术中细胞染色的自动化在很大程度上仍未得到解决。虽然流式细胞术中的样品采集已经完全自动化,但样品染色仍然是一个主要的人工过程-需要大量的时间,劳动力和成本。此外,手工染色的重复性引入了单调性,增加了人为错误的可能性。这里介绍的染色三合一实现了染色过程的完全自动化,只需要输入样品和试剂,无需人工干预。使用染色三合一进行的染色显示出与传统手工染色相当的生物标志物特征。模块化和适应性强的系统设计提供了灵活性,以定制吞吐量和适应分析特定的要求,从而扩展其适用于基于板的配体结合分析。此外,该系统消除了对移液头的需求,体现了一个复杂和可持续的解决方案,提高了实验室效率,同时减少了人为错误和流式细胞术染色中塑料废物的主要来源。尽管3R倡议(减少、再利用、再循环)帮助减少了实验室塑料废物的数量,但仍有大量塑料被焚烧或最终进入垃圾填埋场,在那里它们在环境中存留了几十年。这一限制强调了将第四个R——“移除/替换”——纳入可持续发展战略的必要性。随着流式细胞术在各种生物技术学科中越来越不可或缺,简化相关工作流程以加速药物发现,同时保护维持生命的环境势在必行。
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引用次数: 0
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SLAS Technology
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