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Coarse-Grained Clustering Dynamics of Heterogeneously Coupled Neurons. 异构耦合神经元的粗粒度聚类动力学。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-01-12 DOI: 10.1186/2190-8567-5-2
Sung Joon Moon, Katherine A Cook, Karthikeyan Rajendran, Ioannis G Kevrekidis, Jaime Cisternas, Carlo R Laing

The formation of oscillating phase clusters in a network of identical Hodgkin-Huxley neurons is studied, along with their dynamic behavior. The neurons are synaptically coupled in an all-to-all manner, yet the synaptic coupling characteristic time is heterogeneous across the connections. In a network of N neurons where this heterogeneity is characterized by a prescribed random variable, the oscillatory single-cluster state can transition-through [Formula: see text] (possibly perturbed) period-doubling and subsequent bifurcations-to a variety of multiple-cluster states. The clustering dynamic behavior is computationally studied both at the detailed and the coarse-grained levels, and a numerical approach that can enable studying the coarse-grained dynamics in a network of arbitrarily large size is suggested. Among a number of cluster states formed, double clusters, composed of nearly equal sub-network sizes are seen to be stable; interestingly, the heterogeneity parameter in each of the double-cluster components tends to be consistent with the random variable over the entire network: Given a double-cluster state, permuting the dynamical variables of the neurons can lead to a combinatorially large number of different, yet similar "fine" states that appear practically identical at the coarse-grained level. For weak heterogeneity we find that correlations rapidly develop, within each cluster, between the neuron's "identity" (its own value of the heterogeneity parameter) and its dynamical state. For single- and double-cluster states we demonstrate an effective coarse-graining approach that uses the Polynomial Chaos expansion to succinctly describe the dynamics by these quickly established "identity-state" correlations. This coarse-graining approach is utilized, within the equation-free framework, to perform efficient computations of the neuron ensemble dynamics.

研究了相同霍奇金-赫胥黎神经元网络中振荡相簇的形成及其动态行为。神经元的突触耦合是全对全的,但突触耦合的特征时间在不同的连接上是不均匀的。在由N个神经元组成的网络中,这种异质性由一个规定的随机变量来表征,振荡的单簇状态可以通过[公式:见文本](可能受到干扰)周期加倍和随后的分岔过渡到各种多簇状态。本文从细粒度和粗粒度两个层面对聚类动态行为进行了计算研究,并提出了一种可以研究任意大尺度网络中粗粒度动态的数值方法。在形成的许多簇态中,由几乎相等的子网络大小组成的双簇被认为是稳定的;有趣的是,每个双簇组件中的异质性参数倾向于与整个网络中的随机变量一致:给定双簇状态,排列神经元的动态变量可以导致组合大量不同但相似的“精细”状态,这些状态在粗粒度级别上看起来几乎相同。对于弱异质性,我们发现在每个簇内,神经元的“身份”(其自身的异质性参数值)与其动态状态之间的相关性迅速发展。对于单簇和双簇状态,我们展示了一种有效的粗粒度方法,该方法使用多项式混沌展开,通过这些快速建立的“同一性状态”相关性来简洁地描述动力学。在无方程框架内,利用这种粗粒度方法来执行神经元集合动力学的有效计算。
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引用次数: 10
Extensive Four-Dimensional Chaos in a Mesoscopic Model of the Electroencephalogram. 脑电图介观模型中广泛的四维混沌。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-08-12 DOI: 10.1186/s13408-015-0028-3
Mathew P Dafilis, Federico Frascoli, Peter J Cadusch, David T J Liley

Background: In a previous work (Dafilis et al. in Chaos 23(2):023111, 2013), evidence was presented for four-dimensional chaos in Liley's mesoscopic model of the electroencephalogram. The study was limited to one parameter set of the model equations.

Findings: In this report we expand that result by presenting evidence for the extension of four-dimensional chaotic behavior to a large area of the biologically admissible parameter space. A two-parameter bifurcation analysis highlights the complexity of the dynamical landscape involved in the creation of such chaos.

Conclusions: The extensive presence of high-order chaos in a well-established physiological model of electrorhythmogenesis further emphasizes the applicability and relevance of mean field mesoscopic models in the description of brain activity at theoretical, experimental, and clinical levels.

背景:在之前的一项研究中(Dafilis et al. In Chaos 23(2):023111, 2013), Liley的脑电图介观模型提供了四维混沌的证据。研究仅限于模型方程的一个参数集。发现:在本报告中,我们通过提出四维混沌行为扩展到生物可接受参数空间的大面积的证据来扩展该结果。双参数分岔分析强调了产生这种混沌所涉及的动态景观的复杂性。结论:在一个完善的心律失常生理模型中广泛存在高阶混沌,进一步强调了平均场介观模型在理论、实验和临床水平上描述脑活动的适用性和相关性。
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引用次数: 5
Orientation Maps in V1 and Non-Euclidean Geometry. V1 和非欧几里得几何中的方位图。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-06-17 DOI: 10.1186/s13408-015-0024-7
Alexandre Afgoustidis

In the primary visual cortex, the processing of information uses the distribution of orientations in the visual input: neurons react to some orientations in the stimulus more than to others. In many species, orientation preference is mapped in a remarkable way on the cortical surface, and this organization of the neural population seems to be important for visual processing. Now, existing models for the geometry and development of orientation preference maps in higher mammals make a crucial use of symmetry considerations. In this paper, we consider probabilistic models for V1 maps from the point of view of group theory; we focus on Gaussian random fields with symmetry properties and review the probabilistic arguments that allow one to estimate pinwheel densities and predict the observed value of π. Then, in order to test the relevance of general symmetry arguments and to introduce methods which could be of use in modeling curved regions, we reconsider this model in the light of group representation theory, the canonical mathematics of symmetry. We show that through the Plancherel decomposition of the space of complex-valued maps on the Euclidean plane, each infinite-dimensional irreducible unitary representation of the special Euclidean group yields a unique V1-like map, and we use representation theory as a symmetry-based toolbox to build orientation maps adapted to the most famous non-Euclidean geometries, viz. spherical and hyperbolic geometry. We find that most of the dominant traits of V1 maps are preserved in these; we also study the link between symmetry and the statistics of singularities in orientation maps, and show what the striking quantitative characteristics observed in animals become in our curved models.

在初级视觉皮层中,信息处理利用的是视觉输入中的方向分布:神经元对刺激物中某些方向的反应比对其他方向的反应更大。在许多物种中,方位偏好以一种显著的方式映射在皮层表面,这种神经群的组织似乎对视觉处理非常重要。目前,关于高等哺乳动物方位偏好图的几何形状和发展的现有模型都对对称性的考虑作了重要的利用。在本文中,我们从群论的角度考虑了 V1 地图的概率模型;我们将重点放在具有对称特性的高斯随机场上,并回顾了允许我们估计针轮密度和预测观察到的π值的概率论证。然后,为了检验一般对称论证的相关性,并引入可用于曲线区域建模的方法,我们根据群表示理论(对称的典型数学)重新考虑了该模型。我们表明,通过对欧几里得平面上的复值映射空间进行 Plancherel 分解,特殊欧几里得群的每个无限维不可还原单元表示都会产生一个独特的 V1 类映射,我们利用表示理论作为基于对称性的工具箱,建立了适应最著名的非欧几里得几何(即球面和双曲几何)的方向映射。我们发现,V1 地图的大多数主要特征在这些地图中都得到了保留;我们还研究了对称性与方位图中奇点统计之间的联系,并展示了在动物身上观察到的惊人定量特征在我们的曲面模型中变成了什么。
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引用次数: 0
On the Effects on Cortical Spontaneous Activity of the Symmetries of the Network of Pinwheels in Visual Area V1. 视觉 V1 区风车网络的对称性对皮层自发活动的影响
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-05-30 DOI: 10.1186/s13408-015-0023-8
Romain Veltz, Pascal Chossat, Olivier Faugeras

This paper challenges and extends earlier seminal work. We consider the problem of describing mathematically the spontaneous activity of V1 by combining several important experimental observations including (1) the organization of the visual cortex into a spatially periodic network of hypercolumns structured around pinwheels, (2) the difference between short-range and long-range intracortical connections, the first ones being rather isotropic and producing naturally doubly periodic patterns by Turing mechanisms, the second one being patchy, and (3) the fact that the Turing patterns spontaneously produced by the short-range connections and the network of pinwheels have similar periods. By analyzing the PO maps, we are able to classify all possible singular points (the pinwheels) as having symmetries described by a small subset of the wallpaper groups. We then propose a description of the spontaneous activity of V1 using a classical voltage-based neural field model that features isotropic short-range connectivities modulated by non-isotropic long-range connectivities. A key observation is that, with only short-range connections and because the problem has full translational invariance in this case, a spontaneous doubly periodic pattern generates a 2-torus in a suitable functional space which persists as a flow-invariant manifold under small perturbations, for example when turning on the long-range connections. Through a complete analysis of the symmetries of the resulting neural field equation and motivated by a numerical investigation of the bifurcations of their solutions, we conclude that the branches of solutions which are stable over an extended range of parameters are those that correspond to patterns with an hexagonal (or nearly hexagonal) symmetry. The question of which patterns persist when turning on the long-range connections is answered by (1) analyzing the remaining symmetries on the perturbed torus and (2) combining this information with the Poincaré-Hopf theorem. We have developed a numerical implementation of the theory that has allowed us to produce the predicted patterns of activities, the planforms. In particular we generalize the contoured and non-contoured planforms predicted by previous authors.

本文挑战并扩展了之前的开创性工作。我们考虑了用数学方法描述 V1 自发活动的问题,结合了几个重要的实验观察结果,包括:(1) 将视觉皮层组织成一个围绕风车结构的超视柱空间周期性网络;(2) 皮层内短程连接和长程连接的区别、(3) 短程连接和风车网络自发产生的图灵模式具有相似的周期。通过分析 PO 映射,我们能够将所有可能的奇异点(风车)归类为具有由一小部分壁纸组描述的对称性。然后,我们提出了一种基于电压的经典神经场模型来描述 V1 的自发活动,该模型的特点是各向同性的短程连接性受到非各向同性的长程连接性的调制。一个关键的观察结果是,在只有短程连接的情况下,由于问题在这种情况下具有完全的平移不变性,自发的双周期模式会在一个合适的功能空间中产生一个 2-torus,该 2-torus在微小的扰动下(例如在打开长程连接时)作为流动不变的流形持续存在。通过对由此产生的神经场方程的对称性进行全面分析,并通过对其解的分岔进行数值研究,我们得出结论:在参数的扩展范围内保持稳定的解的分支是那些与具有六边形(或近似六边形)对称性的模式相对应的分支。至于在打开长程连接时哪些模式会持续存在,我们可以通过以下方法来回答:(1)分析扰动环上的剩余对称性;(2)将这些信息与波恩卡莱-霍普夫定理相结合。我们开发了该理论的数值实现方法,使我们能够生成预测的活动模式--平面图。特别是,我们将前人预测的轮廓平面图和非轮廓平面图进行了概括。
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引用次数: 0
Conditions for Multi-functionality in a Rhythm Generating Network Inspired by Turtle Scratching. 受乌龟抓挠启发的节奏生成网络的多功能性条件。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-07-17 DOI: 10.1186/s13408-015-0026-5
Abigail C Snyder, Jonathan E Rubin

Rhythmic behaviors such as breathing, walking, and scratching are vital to many species. Such behaviors can emerge from groups of neurons, called central pattern generators, in the absence of rhythmic inputs. In vertebrates, the identification of the cells that constitute the central pattern generator for particular rhythmic behaviors is difficult, and often, its existence has only been inferred. For example, under experimental conditions, intact turtles generate several rhythmic scratch motor patterns corresponding to non-rhythmic stimulation of different body regions. These patterns feature alternating phases of motoneuron activation that occur repeatedly, with different patterns distinguished by the relative timing and duration of activity of hip extensor, hip flexor, and knee extensor motoneurons. While the central pattern generator network responsible for these outputs has not been located, there is hope to use motoneuron recordings to deduce its properties. To this end, this work presents a model of a previously proposed central pattern generator network and analyzes its capability to produce two distinct scratch rhythms from a single neuron pool, selected by different combinations of tonic drive parameters but with fixed strengths of connections within the network. We show through simulation that the proposed network can achieve the desired multi-functionality, even though it relies on hip unit generators to recruit appropriately timed knee extensor motoneuron activity, including a delay relative to hip activation in rostral scratch. Furthermore, we develop a phase space representation, focusing on the inputs to and the intrinsic slow variable of the knee extensor motoneuron, which we use to derive sufficient conditions for the network to realize each rhythm and which illustrates the role of a saddle-node bifurcation in achieving the knee extensor delay. This framework is harnessed to consider bistability and to make predictions about the responses of the scratch rhythms to input changes for future experimental testing.

有节奏的行为,如呼吸、行走和抓挠,对许多物种都是至关重要的。在没有节奏输入的情况下,这种行为可以从被称为中枢模式生成器的神经元群中产生。在脊椎动物中,识别构成特定节律行为的中心模式发生器的细胞是困难的,而且通常,它的存在只是推断出来的。例如,在实验条件下,完整的海龟产生几种有节奏的抓挠运动模式,对应于不同身体部位的非节奏性刺激。这些模式以反复发生的运动神经元激活的交替阶段为特征,通过髋伸肌、髋屈肌和膝关节伸肌运动神经元活动的相对时间和持续时间来区分不同的模式。虽然负责这些输出的中央模式生成器网络尚未定位,但有希望使用运动神经元记录来推断其特性。为此,本研究提出了先前提出的中央模式生成器网络的模型,并分析了其从单个神经元池中产生两种不同划动节奏的能力,这些划动节奏由不同的音调驱动参数组合选择,但网络内的连接强度固定。我们通过模拟表明,所提出的网络可以实现所需的多功能,即使它依赖于髋关节单元生成器来招募适当时间的膝关节伸肌运动神经元活动,包括在吻侧划痕中相对于髋关节激活的延迟。此外,我们开发了一个相空间表示,重点关注膝关节伸肌运动神经元的输入和固有慢变量,我们使用它来推导网络实现每个节奏的充分条件,并说明了鞍节点分叉在实现膝关节伸肌延迟中的作用。这个框架被用来考虑双稳定性,并对划痕节奏对输入变化的反应做出预测,以供将来的实验测试。
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引用次数: 11
A Mechanistic Neural Field Theory of How Anesthesia Suppresses Consciousness: Synaptic Drive Dynamics, Bifurcations, Attractors, and Partial State Equipartitioning. 麻醉如何抑制意识的机械性神经场理论:突触驱动动力学、分岔、吸引子和部分状态均分。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-10-05 DOI: 10.1186/s13408-015-0032-7
Saing Paul Hou, Wassim M Haddad, Nader Meskin, James M Bailey

With the advances in biochemistry, molecular biology, and neurochemistry there has been impressive progress in understanding the molecular properties of anesthetic agents. However, there has been little focus on how the molecular properties of anesthetic agents lead to the observed macroscopic property that defines the anesthetic state, that is, lack of responsiveness to noxious stimuli. In this paper, we use dynamical system theory to develop a mechanistic mean field model for neural activity to study the abrupt transition from consciousness to unconsciousness as the concentration of the anesthetic agent increases. The proposed synaptic drive firing-rate model predicts the conscious-unconscious transition as the applied anesthetic concentration increases, where excitatory neural activity is characterized by a Poincaré-Andronov-Hopf bifurcation with the awake state transitioning to a stable limit cycle and then subsequently to an asymptotically stable unconscious equilibrium state. Furthermore, we address the more general question of synchronization and partial state equipartitioning of neural activity without mean field assumptions. This is done by focusing on a postulated subset of inhibitory neurons that are not themselves connected to other inhibitory neurons. Finally, several numerical experiments are presented to illustrate the different aspects of the proposed theory.

随着生物化学、分子生物学和神经化学的进步,在了解麻醉剂的分子特性方面取得了令人印象深刻的进展。然而,很少有人关注麻醉剂的分子特性如何导致观察到的定义麻醉状态的宏观特性,即对有害刺激缺乏反应。本文运用动力系统理论建立了神经活动的机械平均场模型,研究了当麻醉药浓度增加时从意识到无意识的突然转变。所提出的突触驱动发射速率模型预测了随着麻醉浓度的增加,神经兴奋性活动的特征是poincar - andronov - hopf分岔,清醒状态过渡到稳定的极限环,然后随后过渡到渐进稳定的无意识平衡状态。此外,我们在没有平均场假设的情况下解决了神经活动的同步和部分状态均分的更一般的问题。这是通过关注一个假设的抑制神经元子集来完成的,这些神经元本身与其他抑制神经元没有联系。最后,给出了几个数值实验来说明所提出理论的不同方面。
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引用次数: 2
Clarification and Complement to "Mean-Field Description and Propagation of Chaos in Networks of Hodgkin-Huxley and FitzHugh-Nagumo Neurons". 对“Hodgkin-Huxley和FitzHugh-Nagumo神经元网络中混沌的平均场描述和传播”的澄清和补充。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-09-01 DOI: 10.1186/s13408-015-0031-8
Mireille Bossy, Olivier Faugeras, Denis Talay

In this note, we clarify the well-posedness of the limit equations to the mean-field N-neuron models proposed in (Baladron et al. in J. Math. Neurosci. 2:10, 2012) and we prove the associated propagation of chaos property. We also complete the modeling issue in (Baladron et al. in J. Math. Neurosci. 2:10, 2012) by discussing the well-posedness of the stochastic differential equations which govern the behavior of the ion channels and the amount of available neurotransmitters.

在本文中,我们澄清了Baladron等人在J. Math中提出的平均场n神经元模型的极限方程的适定性。神经科学。2:10,2012),我们证明了混沌特性的相关传播。我们还在J. Math中完成了Baladron等人的建模问题。神经科学,2:10,2012)通过讨论控制离子通道行为和可用神经递质数量的随机微分方程的适定性。
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引用次数: 9
Neural Excitability and Singular Bifurcations. 神经兴奋性与奇异分岔。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-08-06 DOI: 10.1186/s13408-015-0029-2
Peter De Maesschalck, Martin Wechselberger

We discuss the notion of excitability in 2D slow/fast neural models from a geometric singular perturbation theory point of view. We focus on the inherent singular nature of slow/fast neural models and define excitability via singular bifurcations. In particular, we show that type I excitability is associated with a novel singular Bogdanov-Takens/SNIC bifurcation while type II excitability is associated with a singular Andronov-Hopf bifurcation. In both cases, canards play an important role in the understanding of the unfolding of these singular bifurcation structures. We also explain the transition between the two excitability types and highlight all bifurcations involved, thus providing a complete analysis of excitability based on geometric singular perturbation theory.

从几何奇异摄动理论的角度讨论了二维慢/快神经模型的兴奋性。我们关注慢/快神经模型固有的奇异性,并通过奇异分叉定义兴奋性。特别地,我们证明了I型兴奋性与一个新的奇异Bogdanov-Takens/SNIC分岔有关,而II型兴奋性与一个奇异Andronov-Hopf分岔有关。在这两种情况下,鸭翼在理解这些奇异分岔结构的展开方面发挥了重要作用。我们还解释了两种可激性类型之间的转换,并强调了所涉及的所有分岔,从而提供了基于几何奇异摄动理论的可激性的完整分析。
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引用次数: 43
The Minimal k-Core Problem for Modeling k-Assemblies. k-组件建模的最小k核问题。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-07-14 DOI: 10.1186/s13408-015-0027-4
Cynthia I Wood, Illya V Hicks

The concept of cell assembly was introduced by Hebb and formalized mathematically by Palm in the framework of graph theory. In the study of associative memory, a cell assembly is a group of neurons that are strongly connected and represent a "concept" of our knowledge. This group is wired in a specific manner such that only a fraction of its neurons will excite the entire assembly. We link the concept of cell assembly to the closure of a minimal k-core and study a particular type of cell assembly called k-assembly. The goal of this paper is to find all substructures within a network that must be excited in order to activate a k-assembly. Through numerical experiments, we confirm that fractions of these important subgroups overlap. To explore the problem, we present a backtracking algorithm to find all minimal k-cores of a given undirected graph, which belongs to the class of NP-hard problems. The proposed method is a modification of the Bron and Kerbosch algorithm for finding all cliques of an undirected graph. The results in the tested graphs offer insight in analyzing graph structure and help better understand how concepts are stored.

细胞集合的概念由Hebb提出,并由Palm在图论的框架内进行数学形式化。在联想记忆的研究中,细胞集合是一组紧密相连的神经元,代表了我们知识的一个“概念”。这个组以一种特殊的方式连接,只有一小部分神经元会激发整个集合。我们将细胞组装的概念与最小k核的闭合联系起来,并研究了一种称为k组装的特定类型的细胞组装。本文的目标是找出网络中所有必须被激发才能激活k组装的子结构。通过数值实验,我们证实了这些重要亚群的部分重叠。为了探索这一问题,我们提出了一种回溯算法来查找给定无向图的所有最小k核,这类问题属于np困难问题。该方法是对brown和Kerbosch算法的改进,用于寻找无向图的所有团。测试图中的结果提供了分析图结构的洞察力,并有助于更好地理解概念是如何存储的。
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引用次数: 10
A Simple Mechanism for Beyond-Pairwise Correlations in Integrate-and-Fire Neurons. 整合与发射神经元中的后对相关性的简单机制
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2015-12-01 Epub Date: 2015-09-01 DOI: 10.1186/s13408-015-0030-9
David A Leen, Eric Shea-Brown

The collective dynamics of neural populations are often characterized in terms of correlations in the spike activity of different neurons. We have developed an understanding of the circuit mechanisms that lead to correlations among cell pairs, but little is known about what determines the population firing statistics among larger groups of cells. Here, we examine this question for a simple, but ubiquitous, circuit feature: common fluctuating input arriving to spiking neurons of integrate-and-fire type. We show that this leads to strong beyond-pairwise correlations-that is, correlations that cannot be captured by maximum entropy models that extrapolate from pairwise statistics-as for earlier work with discrete threshold crossing (dichotomous Gaussian) models. Moreover, we find that the same is true for another widely used, doubly stochastic model of neural spiking, the linear-nonlinear cascade. We demonstrate the strong connection between the collective dynamics produced by integrate-and-fire and dichotomous Gaussian models, and show that the latter is a surprisingly accurate model of the former. Our conclusion is that beyond-pairwise correlations can be both broadly expected and possible to describe by simplified (and tractable) statistical models.

神经群的集体动力学通常以不同神经元尖峰活动的相关性为特征。我们已经对导致细胞对之间相关性的电路机制有了一定的了解,但对于是什么决定了更大细胞群之间的群体发射统计却知之甚少。在这里,我们针对一个简单但无处不在的电路特征研究了这一问题:到达整合-发射型尖峰神经元的共同波动输入。我们的研究表明,这将导致强烈的超越配对相关性--即最大熵模型无法捕捉的相关性,而最大熵模型是从配对统计中推断出来的--就像早先的离散阈值交叉(二分高斯)模型一样。此外,我们还发现,另一种广泛使用的神经尖峰脉冲双重随机模型--线性-非线性级联模型--也是如此。我们证明了集射模型和二分高斯模型所产生的集体动力学之间的紧密联系,并表明后者是前者的一个令人惊讶的精确模型。我们的结论是,超越配对相关性既可以被广泛预期,也可以用简化(和可操作)的统计模型来描述。
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引用次数: 0
期刊
Journal of Mathematical Neuroscience
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