Pub Date : 2022-06-10DOI: 10.1080/14772000.2022.2062478
N. Wickramasinghe, L. Wickramasinghe, D. R. Vidanapathirana, K. H. Tennakoon, S. Samarakoon, D. Gower
Sri Lanka has a rich snake diversity, but the island’s scolecophidians (‘blindsnakes’) are poorly understood due to the cryptic, burrowing habits of these inconspicuous animals and lack of systematic field surveys and morphological and molecular analyses. Here we report findings from a systematic survey carried out over a decade across the island of Sri Lanka, focusing particularly on the globally widespread, parthenogenetic species Indotyphlops braminus. We report 780 locations across the island in which this species was recorded, at elevations of 1–1,424 m asl, and mostly <1,000 m (771 out of 780 localities). We provide a molecular-systematics perspective by reporting new DNA sequence data for 15 specimens from Sri Lanka, and new analyses of asiatyphlopine molecular genetic diversity and relationships. Based on molecular results, we conclude that (i) Indotyphlops, as originally conceived may not be monophyletic, (ii) phenotypically the I. braminus-like blindsnakes widespread across most of Sri Lanka are a single, genetically homogeneous species, and (iii) some populations from peninsular India are very similar in DNA sequence to I. braminus from Sri Lanka, but others are genetically highly distinct and unlikely to be conspecific. Based on the estimated phylogenetic relationships, we recommend that I. braminus is currently best recognized as a phenotypically exceptional species of Indotyphlops rather than, as recently proposed, the only species of a monotypic genus (Virgotyphlops).
斯里兰卡有丰富的蛇多样性，但由于这些不起眼的动物隐秘的洞穴习性，以及缺乏系统的实地调查、形态和分子分析，人们对该岛的Scolechophidians（“盲蛇”）知之甚少。在这里，我们报告了十多年来在斯里兰卡岛上进行的一项系统调查的结果，该调查特别关注全球广泛分布的单性生殖物种Indotyplops braminus。我们报告了全岛780个记录该物种的地点，海拔1-1424 m asl，大部分<1000 m（780个地点中有771个）。我们通过报道来自斯里兰卡的15个标本的新DNA序列数据，以及对亚洲斑蝥素分子遗传多样性和关系的新分析，提供了分子系统学的观点。根据分子结果，我们得出结论：（i）最初设想的Indotyplops可能不是单系的，（ii）在斯里兰卡大部分地区广泛分布的类似印度象的盲尾蛇在表型上是一个单一的、基因同源的物种，以及（iii）印度半岛的一些种群在DNA序列上与斯里兰卡的印度象非常相似，但其他物种在基因上高度不同，不太可能是同种的。根据估计的系统发育关系，我们建议braminus I.braminus目前被认为是Indotyplops的一个表型异常物种，而不是最近提出的唯一一个单型属（Virgotypops）物种。
{"title":"A molecular-genetics perspective on the systematics of the parthenogenetic flowerpot blindsnake Indotyphlops braminus (Daudin, 1803) (Squamata: Serpentes: Typhlopidae)","authors":"N. Wickramasinghe, L. Wickramasinghe, D. R. Vidanapathirana, K. H. Tennakoon, S. Samarakoon, D. Gower","doi":"10.1080/14772000.2022.2062478","DOIUrl":"https://doi.org/10.1080/14772000.2022.2062478","url":null,"abstract":"Sri Lanka has a rich snake diversity, but the island’s scolecophidians (‘blindsnakes’) are poorly understood due to the cryptic, burrowing habits of these inconspicuous animals and lack of systematic field surveys and morphological and molecular analyses. Here we report findings from a systematic survey carried out over a decade across the island of Sri Lanka, focusing particularly on the globally widespread, parthenogenetic species Indotyphlops braminus. We report 780 locations across the island in which this species was recorded, at elevations of 1–1,424 m asl, and mostly <1,000 m (771 out of 780 localities). We provide a molecular-systematics perspective by reporting new DNA sequence data for 15 specimens from Sri Lanka, and new analyses of asiatyphlopine molecular genetic diversity and relationships. Based on molecular results, we conclude that (i) Indotyphlops, as originally conceived may not be monophyletic, (ii) phenotypically the I. braminus-like blindsnakes widespread across most of Sri Lanka are a single, genetically homogeneous species, and (iii) some populations from peninsular India are very similar in DNA sequence to I. braminus from Sri Lanka, but others are genetically highly distinct and unlikely to be conspecific. Based on the estimated phylogenetic relationships, we recommend that I. braminus is currently best recognized as a phenotypically exceptional species of Indotyphlops rather than, as recently proposed, the only species of a monotypic genus (Virgotyphlops).","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 16"},"PeriodicalIF":1.9,"publicationDate":"2022-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43876728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-05-25DOI: 10.1080/14772000.2022.2046199
Haitham Alnaqeb, S. Greiman, K. Vandegrift, M. Campbell, Shawn Meagher, F. Jiménez
A new species of Heligmosomoides Hall, 1916 is proposed for nematodes collected from deer mice, Peromyscus maniculatus, in western Canada. The unequivocal diagnostic character for this species is the presence of two internal bursal membranes. Only four species, Heligmosomoides bullosus, Heligmosomoides douglasi, Heligmosomoides montanus and Heligmosomoides vandegrifti, are characterized as possessing a single internal bursal membrane. The genetic distance between Heligmosomoides bibullosus sp. nov., and its putative sister clade Heligmosomoides vandegrifti is congruent with their geographic separation by the mountain range of the Rockies and 4000 km; both morphological difference as well as geography and genetic distance suggest isolation among the two species. Further, H. bibullosus sp. nov. infects deer mice (P. maniculatus) whereas H. vandegrifti is frequently collected in white-footed mice (P. leucopus). Finally, this study supports the taxonomic importance of the monodelphic/didelphic condition as a diagnostic trait within the family, the paraphyly of Heligmosomoides, and reveals undocumented diversity of Heligmosomoides in Nearctic rodents of the Neotominae. The present taxon is the third species in members of this subfamily of rodents. http://www.zoobank.org/urn:lsid:zoobank.org:pub:DE78368D-2CDE-4F9D-AB85-A3CE20D957F4
{"title":"A molecular reconstruction of holarctic Heligmosomidae reveals a new species of Heligmosomoides (Nematoda: Heligmosomidae) in Peromyscus maniculatus (Neotominae) from Canada","authors":"Haitham Alnaqeb, S. Greiman, K. Vandegrift, M. Campbell, Shawn Meagher, F. Jiménez","doi":"10.1080/14772000.2022.2046199","DOIUrl":"https://doi.org/10.1080/14772000.2022.2046199","url":null,"abstract":"A new species of Heligmosomoides Hall, 1916 is proposed for nematodes collected from deer mice, Peromyscus maniculatus, in western Canada. The unequivocal diagnostic character for this species is the presence of two internal bursal membranes. Only four species, Heligmosomoides bullosus, Heligmosomoides douglasi, Heligmosomoides montanus and Heligmosomoides vandegrifti, are characterized as possessing a single internal bursal membrane. The genetic distance between Heligmosomoides bibullosus sp. nov., and its putative sister clade Heligmosomoides vandegrifti is congruent with their geographic separation by the mountain range of the Rockies and 4000 km; both morphological difference as well as geography and genetic distance suggest isolation among the two species. Further, H. bibullosus sp. nov. infects deer mice (P. maniculatus) whereas H. vandegrifti is frequently collected in white-footed mice (P. leucopus). Finally, this study supports the taxonomic importance of the monodelphic/didelphic condition as a diagnostic trait within the family, the paraphyly of Heligmosomoides, and reveals undocumented diversity of Heligmosomoides in Nearctic rodents of the Neotominae. The present taxon is the third species in members of this subfamily of rodents. http://www.zoobank.org/urn:lsid:zoobank.org:pub:DE78368D-2CDE-4F9D-AB85-A3CE20D957F4","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 19"},"PeriodicalIF":1.9,"publicationDate":"2022-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44015732","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-05-23DOI: 10.1080/14772000.2022.2049391
A. Erst, A. Nikulin, V. Nikulin, A. L. Ebel, E.V. Zibzeev, M. T. Sharples, S. Baasanmunkh, H. Choi, M. Olonova, A. I. Pyak, I. I. Gureyeva, T. Erst, A. Kechaykin, A. Luferov, S. Maltseva, M. Nobis, L. Lian, W. Wang
The Altai Mountains of central Asia are biologically rich and comprise a wide diversity of ecosystems and lineages, including numerous endemic vascular plant species. Here we provide an updated checklist of the endemic vascular flora of the Altai Mountains with more taxa and higher geographic resolution than previously reported, as well as first molecular data and specimen images for many of these species. This flora is now known to contain 321 endemic species distributed in 34 families, many of which are narrowly restricted to one subregion of the Altai. The Fabaceae has given rise to the most endemic species in the Altai (74 spp.), and most of this diversity is found in the large and ecologically important genera Astragalus and Oxytropis. Approximately 60% of the endemic flora was imaged and successfully barcoded with at least one of three common DNA barcoding loci, and a phylogenetic tree based upon these loci is also presented to display the evolutionary breadth of endemism in the Altai. The distribution of each endemic species is presented in terms of a standard geographic subdivision of the Altai region, with general conservation priorities discussed based on areas currently afforded protected status.
{"title":"Distribution analysis, updated checklist, and DNA barcodes of the endemic vascular flora of the Altai mountains, a Siberian biodiversity hotspot","authors":"A. Erst, A. Nikulin, V. Nikulin, A. L. Ebel, E.V. Zibzeev, M. T. Sharples, S. Baasanmunkh, H. Choi, M. Olonova, A. I. Pyak, I. I. Gureyeva, T. Erst, A. Kechaykin, A. Luferov, S. Maltseva, M. Nobis, L. Lian, W. Wang","doi":"10.1080/14772000.2022.2049391","DOIUrl":"https://doi.org/10.1080/14772000.2022.2049391","url":null,"abstract":"The Altai Mountains of central Asia are biologically rich and comprise a wide diversity of ecosystems and lineages, including numerous endemic vascular plant species. Here we provide an updated checklist of the endemic vascular flora of the Altai Mountains with more taxa and higher geographic resolution than previously reported, as well as first molecular data and specimen images for many of these species. This flora is now known to contain 321 endemic species distributed in 34 families, many of which are narrowly restricted to one subregion of the Altai. The Fabaceae has given rise to the most endemic species in the Altai (74 spp.), and most of this diversity is found in the large and ecologically important genera Astragalus and Oxytropis. Approximately 60% of the endemic flora was imaged and successfully barcoded with at least one of three common DNA barcoding loci, and a phylogenetic tree based upon these loci is also presented to display the evolutionary breadth of endemism in the Altai. The distribution of each endemic species is presented in terms of a standard geographic subdivision of the Altai region, with general conservation priorities discussed based on areas currently afforded protected status.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 30"},"PeriodicalIF":1.9,"publicationDate":"2022-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42067408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-14DOI: 10.1080/14772000.2022.2046200
L. Negrete, M. Francavilla, C. Damborenea, F. Brusa
The morphological and molecular (mitochondrial cytochrome c oxidase subunit I, COI) characterization of a new species of the subfamily Geoplaninae (Geoplanidae) supports the erection of a new genus, Anophthalmoplana gen. nov. The most remarkable feature of Anophthalmoplana horticola sp. nov. is the absence of eyes, a feature so far only recorded in one species of Geoplaninae, Geobia subterranea. Other features of the species are: a narrow, ribbon-shaped body; a gonopore near the posterior tip; a creeping sole almost as wide as body width; cylindrical pharynx; voluminous extrabulbar prostatic vesicle; protrusible penis papilla occupying the whole male atrium; a common ovovitelline duct dorsal to the female atrium; the atrium being lined by an epithelium with a stratified appearance. Based on the mtDNA phylogeny, the specimens studied here form a separate clade from the genus Geobia, thus contradicting its inclusion in this genus or any other of the subfamily Geoplaninae. These results reinforce the morphological differences observed, regarding internal anatomy, from Geobia and other members of Geoplaninae. http://zoobank.org/urn:lsid:zoobank.org:pub:317A4055-BCC8-4B89-A9DC-F96F98E803A5
{"title":"A new genus of land planarian (Platyhelminthes, Geoplanidae) for a new ‘blind’ species","authors":"L. Negrete, M. Francavilla, C. Damborenea, F. Brusa","doi":"10.1080/14772000.2022.2046200","DOIUrl":"https://doi.org/10.1080/14772000.2022.2046200","url":null,"abstract":"The morphological and molecular (mitochondrial cytochrome c oxidase subunit I, COI) characterization of a new species of the subfamily Geoplaninae (Geoplanidae) supports the erection of a new genus, Anophthalmoplana gen. nov. The most remarkable feature of Anophthalmoplana horticola sp. nov. is the absence of eyes, a feature so far only recorded in one species of Geoplaninae, Geobia subterranea. Other features of the species are: a narrow, ribbon-shaped body; a gonopore near the posterior tip; a creeping sole almost as wide as body width; cylindrical pharynx; voluminous extrabulbar prostatic vesicle; protrusible penis papilla occupying the whole male atrium; a common ovovitelline duct dorsal to the female atrium; the atrium being lined by an epithelium with a stratified appearance. Based on the mtDNA phylogeny, the specimens studied here form a separate clade from the genus Geobia, thus contradicting its inclusion in this genus or any other of the subfamily Geoplaninae. These results reinforce the morphological differences observed, regarding internal anatomy, from Geobia and other members of Geoplaninae. http://zoobank.org/urn:lsid:zoobank.org:pub:317A4055-BCC8-4B89-A9DC-F96F98E803A5","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 16"},"PeriodicalIF":1.9,"publicationDate":"2022-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48104491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-12DOI: 10.1080/14772000.2022.2046198
M. López-Rodríguez, A. D. Asencio, Rosa M. Meijide, E. Torres
The species composition of cyanobacteria assemblages was studied in six thermo-mineral springs of spas in Atlantic environments of Galicia (NW Spain). Two are considered hot (Ta ≥ 40 °C), two intermediate (Ta 20–40 °C) and two cold (Ta ≤ 20 °C), and four contain hydrogen sulphide. A total of 21 taxa (14 genera) have been recorded. Two diversity indices, Shannon index and Evenness were determined. The Shannon–Wiener index ranged between 0.31 and 0.73 and the Evenness index between 0.44 and 0.88. nMDS ordination showed that cyanobacteria assemblage composition was influenced mostly by temperature. Of the species identified, the most diverse genus is Leptolyngbya with four species, followed by Chroococcus with three species and Aphanocapsa, Phormidium and Lyngbya with two species. The most abundant species was Jaaginema angustissimum, followed by Leptolyngbya laminosa and Symploca thermalis. In the two cold springs, seven different species were found, and only Aphanocapsa conferta was common to both springs. Cyanobacterial species were more numerous in the four hot springs, with 15 different species and only Calothrix thermalis common to these hot springs. It is difficult to establish characteristic cyanobacterial flora for the thermo-mineral waters of the Galician springs since there are significant differences in the communities from the six sites studied.
{"title":"Extremophilic cyanobacteria from thermo-mineral springs of spas in Atlantic environments","authors":"M. López-Rodríguez, A. D. Asencio, Rosa M. Meijide, E. Torres","doi":"10.1080/14772000.2022.2046198","DOIUrl":"https://doi.org/10.1080/14772000.2022.2046198","url":null,"abstract":"The species composition of cyanobacteria assemblages was studied in six thermo-mineral springs of spas in Atlantic environments of Galicia (NW Spain). Two are considered hot (Ta ≥ 40 °C), two intermediate (Ta 20–40 °C) and two cold (Ta ≤ 20 °C), and four contain hydrogen sulphide. A total of 21 taxa (14 genera) have been recorded. Two diversity indices, Shannon index and Evenness were determined. The Shannon–Wiener index ranged between 0.31 and 0.73 and the Evenness index between 0.44 and 0.88. nMDS ordination showed that cyanobacteria assemblage composition was influenced mostly by temperature. Of the species identified, the most diverse genus is Leptolyngbya with four species, followed by Chroococcus with three species and Aphanocapsa, Phormidium and Lyngbya with two species. The most abundant species was Jaaginema angustissimum, followed by Leptolyngbya laminosa and Symploca thermalis. In the two cold springs, seven different species were found, and only Aphanocapsa conferta was common to both springs. Cyanobacterial species were more numerous in the four hot springs, with 15 different species and only Calothrix thermalis common to these hot springs. It is difficult to establish characteristic cyanobacterial flora for the thermo-mineral waters of the Galician springs since there are significant differences in the communities from the six sites studied.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 15"},"PeriodicalIF":1.9,"publicationDate":"2022-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49464331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-11DOI: 10.1080/14772000.2022.2063964
A. Zamani, Davide Dal Pos, Z. Fric, A. Orfinger, Mark D. Scherz, A. Bartoňová, H. Gante
Roughly 18,000 species are described annually as new to science, while estimated extinction rates are comparable to or even exceeding these new discoveries. Considering the estimates of up to 15 million extant eukaryotic species on Earth, of which only about 2 million have been described so far, there has been a recent ‘boom’ of new potential approaches to more quickly discover and describe the millions of unknown species. This deficit is particularly noted in hyperdiverse taxa, as the current rate of species discovery is considered too slow. Recently, a ‘minimalist’ alpha taxonomic approach was proposed, relying solely on DNA barcoding and a habitus photograph, in a claimed effort to expedite the naming of new species to combat the so-called taxonomic impediment. In this paper, we point to limitations of minimalist taxonomy, present arguments in favour of the integrative approach, and finally explore a number of potential solutions to combat the taxonomic impediment in hyperdiverse taxa without sacrificing utility and quality for apparent speed and quantity.
{"title":"The future of zoological taxonomy is integrative, not minimalist","authors":"A. Zamani, Davide Dal Pos, Z. Fric, A. Orfinger, Mark D. Scherz, A. Bartoňová, H. Gante","doi":"10.1080/14772000.2022.2063964","DOIUrl":"https://doi.org/10.1080/14772000.2022.2063964","url":null,"abstract":"Roughly 18,000 species are described annually as new to science, while estimated extinction rates are comparable to or even exceeding these new discoveries. Considering the estimates of up to 15 million extant eukaryotic species on Earth, of which only about 2 million have been described so far, there has been a recent ‘boom’ of new potential approaches to more quickly discover and describe the millions of unknown species. This deficit is particularly noted in hyperdiverse taxa, as the current rate of species discovery is considered too slow. Recently, a ‘minimalist’ alpha taxonomic approach was proposed, relying solely on DNA barcoding and a habitus photograph, in a claimed effort to expedite the naming of new species to combat the so-called taxonomic impediment. In this paper, we point to limitations of minimalist taxonomy, present arguments in favour of the integrative approach, and finally explore a number of potential solutions to combat the taxonomic impediment in hyperdiverse taxa without sacrificing utility and quality for apparent speed and quantity.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 14"},"PeriodicalIF":1.9,"publicationDate":"2022-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44956988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-06DOI: 10.1080/14772000.2022.2046657
F. E. A. Coelho, Felipe Camurugi, Ricardo Marques, F. M. Magalhães, F. Werneck, A. A. Garda
The Atlantic and Amazon rainforests have a shared but unclear past, with intermittent connections resulting from historical climate change. We investigate these connections by studying the phylogeography and climatic niche of the disjunct distributed frog Lithobates palmipes. We sequenced two fragments of mitochondrial DNA from Atlantic Forest (AtF) and Amazonia (AmF) individuals and evaluated how genetic diversity is distributed in space and whether past demographic changes occurred. Also, we evaluated the existence of past suitable connections between biomes for L. palmipes through ecological niche models (ENM) and tested for niche divergence. The AtF group is nested within the AmF group and closely related to individuals from eastern Amazonia, a pattern recovered in many species that used northeast connection routes. We found evidence of recurrent use of connections in different directions and time during the Pleistocene, resulting in genetic structure between biomes, with no signal of demographic change and evidence of niche divergence across both genetic groups. ENMs indicated suitable areas connecting forests throughout northeastern Brazil during the Pleistocene. Mitochondrial lineages do not match biomes exactly. One lineage is composed of AtF populations and eastern Amazonia individuals. The other is composed of western Amazonia individuals, suggesting an effect of past climatic heterogeneity within the Amazonia forest. This is the first evidence that this route drove genetic and ecological diversity for amphibians recently, a group with habits and ecological requirements different from other vertebrates that have been shown to use this putative corridor.
{"title":"Historical connections between Atlantic Forest and Amazonia drove genetic and ecological diversity in Lithobates palmipes (Anura, Ranidae)","authors":"F. E. A. Coelho, Felipe Camurugi, Ricardo Marques, F. M. Magalhães, F. Werneck, A. A. Garda","doi":"10.1080/14772000.2022.2046657","DOIUrl":"https://doi.org/10.1080/14772000.2022.2046657","url":null,"abstract":"The Atlantic and Amazon rainforests have a shared but unclear past, with intermittent connections resulting from historical climate change. We investigate these connections by studying the phylogeography and climatic niche of the disjunct distributed frog Lithobates palmipes. We sequenced two fragments of mitochondrial DNA from Atlantic Forest (AtF) and Amazonia (AmF) individuals and evaluated how genetic diversity is distributed in space and whether past demographic changes occurred. Also, we evaluated the existence of past suitable connections between biomes for L. palmipes through ecological niche models (ENM) and tested for niche divergence. The AtF group is nested within the AmF group and closely related to individuals from eastern Amazonia, a pattern recovered in many species that used northeast connection routes. We found evidence of recurrent use of connections in different directions and time during the Pleistocene, resulting in genetic structure between biomes, with no signal of demographic change and evidence of niche divergence across both genetic groups. ENMs indicated suitable areas connecting forests throughout northeastern Brazil during the Pleistocene. Mitochondrial lineages do not match biomes exactly. One lineage is composed of AtF populations and eastern Amazonia individuals. The other is composed of western Amazonia individuals, suggesting an effect of past climatic heterogeneity within the Amazonia forest. This is the first evidence that this route drove genetic and ecological diversity for amphibians recently, a group with habits and ecological requirements different from other vertebrates that have been shown to use this putative corridor.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 19"},"PeriodicalIF":1.9,"publicationDate":"2022-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46243314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-29DOI: 10.1080/14772000.2022.2039319
A. Amarasinghe, S. Karunarathna, Patrick D. Campbell, A. Gayan, W. D. B. Ranasinghe, A. de Silva, Z. Mirza
The genus Cyrtodactylus has recently been classified phylogenetically into several clades, subclades, groups, and some into Sri Lankan Cyrtodactylus. Certain complexes from the Indian subcontinent have been assigned to the “C. triedrus group”. This group is comprised of medium-sized species (SVL 50.6–105.7 mm) and are composed of five major species complexes: fraenatus, triedrus, deccanensis, jeyporensis, and collegalensis. Among these complexes, the latter four are composed of ground and litter dwelling species, which were previously assigned to the genus Geckoella; and is currently being treated as a subgenus. Cyrtodactylus triedrus, an endemic species of Sri Lanka, has long been considered a widely distributed single species in this part of the world. Based on morphological and phylogenetic evidences, we demonstrate that C. (G.) triedrus is not a single species, but a species complex. We also describe a new species that is restricted to intermediate savanna-mixed dry lowland forested habitats. Furthermore, we resurrect Geckoella punctata, assign it to the genus Cyrtodactylus and designate a lectotype that we redescribe. The genetic divergence across species of the C. triedrus clade varies between 11–26% in the studied fragment of the mitochondrial NADH dehydrogenase subunit 2 gene. The molecular phylogeny of the ground dwelling radiation of the subgenus Geckoella indicates deep splits between the Indian species and Sri Lankan endemic C. (G.) triedrus sensu stricto, and between Indian dry and wet zone clades. Cyrtodactylus (G.). triedrus is restricted to the moist or submontane forests in the Central highlands of Sri Lanka and is redescribed herein based on its holotype. http://zoobank.org/urn:lsid:zoobank:org:pub:3B37037C-EE9F-4011-BEC9-47E1F3BB6779
近年来，在系统发育上已被划分为几个分支、亚分支、群，其中一些被划分为斯里兰卡的环趾足类。来自印度次大陆的某些综合体已被分配到“C”。triedrus集团”。该类群由中等种(SVL 50.6-105.7 mm)组成，由5个主要种群组成:fraenatus、triiedrus、deccanensis、jeyporensis和collealensis。在这些复合体中，后4种由地面和凋落物栖种组成，它们以前被归为壁虎属;目前被视为亚属。三爪蟹是斯里兰卡的特有物种，长期以来一直被认为是世界这一地区广泛分布的单一物种。基于形态学和系统发育的证据，我们证明了三叶瓢虫不是一个单一的物种，而是一个物种复合体。我们还描述了一种新物种，它局限于中间稀树草原-混合干低地森林栖息地。此外，我们复活了斑点壁虎，将其分配到Cyrtodactylus属，并指定了一个我们重新描述的选择型。线粒体NADH脱氢酶亚基2基因片段的遗传差异在11-26%之间。地面栖息辐射壁虎亚属的分子系统发育表明，其在印度种与斯里兰卡特有的c (g) triedrus sensu stricto之间，以及在印度干湿区分支之间存在着深刻的分裂。Cyrtodactylus (g)。三棱藓属植物仅生长在斯里兰卡中部高地的湿润或亚山地森林中，本文根据其全型重新描述。http://zoobank.org/urn:lsid:zoobank:org:pub:3B37037C-EE9F-4011-BEC9-47E1F3BB6779
{"title":"The hidden diversity and inland radiation of Sri Lanka’s ground-dwelling geckos of the genus Cyrtodactylus (Reptilia: Gekkonidae)","authors":"A. Amarasinghe, S. Karunarathna, Patrick D. Campbell, A. Gayan, W. D. B. Ranasinghe, A. de Silva, Z. Mirza","doi":"10.1080/14772000.2022.2039319","DOIUrl":"https://doi.org/10.1080/14772000.2022.2039319","url":null,"abstract":"The genus Cyrtodactylus has recently been classified phylogenetically into several clades, subclades, groups, and some into Sri Lankan Cyrtodactylus. Certain complexes from the Indian subcontinent have been assigned to the “C. triedrus group”. This group is comprised of medium-sized species (SVL 50.6–105.7 mm) and are composed of five major species complexes: fraenatus, triedrus, deccanensis, jeyporensis, and collegalensis. Among these complexes, the latter four are composed of ground and litter dwelling species, which were previously assigned to the genus Geckoella; and is currently being treated as a subgenus. Cyrtodactylus triedrus, an endemic species of Sri Lanka, has long been considered a widely distributed single species in this part of the world. Based on morphological and phylogenetic evidences, we demonstrate that C. (G.) triedrus is not a single species, but a species complex. We also describe a new species that is restricted to intermediate savanna-mixed dry lowland forested habitats. Furthermore, we resurrect Geckoella punctata, assign it to the genus Cyrtodactylus and designate a lectotype that we redescribe. The genetic divergence across species of the C. triedrus clade varies between 11–26% in the studied fragment of the mitochondrial NADH dehydrogenase subunit 2 gene. The molecular phylogeny of the ground dwelling radiation of the subgenus Geckoella indicates deep splits between the Indian species and Sri Lankan endemic C. (G.) triedrus sensu stricto, and between Indian dry and wet zone clades. Cyrtodactylus (G.). triedrus is restricted to the moist or submontane forests in the Central highlands of Sri Lanka and is redescribed herein based on its holotype. http://zoobank.org/urn:lsid:zoobank:org:pub:3B37037C-EE9F-4011-BEC9-47E1F3BB6779","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 25"},"PeriodicalIF":1.9,"publicationDate":"2022-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42157047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-17DOI: 10.1080/14772000.2022.2032460
L. Peixoto, R. Campos-da-Paz, N. Menezes, C. D. D. Santana, M. Triques, A. Datovo
A new species of the poorly known and critically endangered ghost knifefish Tembeassu is described from the upper Paraná and Araguari rivers, Brazil, using external anatomy and X-ray microcomputed tomography (µCT scan). Tembeassu titanicus sp. nov. is distinguished from its sole congener, T. marauna, by a unique set of morphometric and meristic characters, in addition to the absence of a tooth patch at the anterior portion of the roof of the oral cavity and the external corner of the mouth slightly passing the vertical through the posterior margin of the posterior nare. To test the monophyly of Tembeassu and reassess its phylogenetic position, a total-evidence approach was performed through a Bayesian inference (BI) and maximum-parsimony analysis (MP). Our results indicate that Tembeassu is monophyletic and the sister taxon of a clade formed by Apteronotus s.s., Megadontognathus, and Parapteronotus (BI); or as part of a large polytomy at the base of Apteronotidae (MP). Species of Tembeassu co-occur in the Paraná River basin, and the absence of the patch of accessory teeth in T. titanicus sp. nov. may indicate that this species accesses a different food resource, and also putatively occupies a different habitat than T. marauna. Comments on the evolution of the mandibular lobe in Gymnotiformes, dentition pattern in Tembeassu, and apteronotid diversity in the Paraná River are provided. http://zoobank.org/urn:lsid:zoobank.org:act:691CB9A5-5CDB-4BF9-8A6FEAE877563C12
{"title":"Systematics of Neotropical electric knifefish Tembeassu (Gymnotiformes, Apteronotidae)","authors":"L. Peixoto, R. Campos-da-Paz, N. Menezes, C. D. D. Santana, M. Triques, A. Datovo","doi":"10.1080/14772000.2022.2032460","DOIUrl":"https://doi.org/10.1080/14772000.2022.2032460","url":null,"abstract":"A new species of the poorly known and critically endangered ghost knifefish Tembeassu is described from the upper Paraná and Araguari rivers, Brazil, using external anatomy and X-ray microcomputed tomography (µCT scan). Tembeassu titanicus sp. nov. is distinguished from its sole congener, T. marauna, by a unique set of morphometric and meristic characters, in addition to the absence of a tooth patch at the anterior portion of the roof of the oral cavity and the external corner of the mouth slightly passing the vertical through the posterior margin of the posterior nare. To test the monophyly of Tembeassu and reassess its phylogenetic position, a total-evidence approach was performed through a Bayesian inference (BI) and maximum-parsimony analysis (MP). Our results indicate that Tembeassu is monophyletic and the sister taxon of a clade formed by Apteronotus s.s., Megadontognathus, and Parapteronotus (BI); or as part of a large polytomy at the base of Apteronotidae (MP). Species of Tembeassu co-occur in the Paraná River basin, and the absence of the patch of accessory teeth in T. titanicus sp. nov. may indicate that this species accesses a different food resource, and also putatively occupies a different habitat than T. marauna. Comments on the evolution of the mandibular lobe in Gymnotiformes, dentition pattern in Tembeassu, and apteronotid diversity in the Paraná River are provided. http://zoobank.org/urn:lsid:zoobank.org:act:691CB9A5-5CDB-4BF9-8A6FEAE877563C12","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 19"},"PeriodicalIF":1.9,"publicationDate":"2022-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44714124","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-17DOI: 10.1080/14772000.2022.2039320
Francesco Belluardo, Mark D. Scherz, Bárbara Santos, F. Andreone, A. Antonelli, F. Glaw, A. J. Munõz-Pajares, J. E. Randrianirina, A. P. Raselimanana, M. Vences, A. Crottini
The study of diamond frogs (genus Rhombophryne, endemic to Madagascar) has been historically hampered by the paucity of available specimens, because of their low detectability in the field. Over the last 10 years, 13 new taxa have been described, and 20 named species are currently recognized. Nevertheless, undescribed diversity within the genus is probably large, calling for a revision of the taxonomic identification of published records and an update of the known distribution of each lineage. Here we generate DNA sequences of the mitochondrial 16S rRNA gene of all specimens available to us, revise the genetic data from public databases, and report all deeply divergent mitochondrial lineages of Rhombophryne identifiable from these data. We also generate a multi-locus dataset (including five mitochondrial and eight nuclear markers; 9844 bp) to infer a species-level phylogenetic hypothesis for the diversification of this genus and revise the distribution of each lineage. We recognize a total of 10 candidate species, two of which are identified here for the first time. The genus Rhombophryne is here proposed to be divided into six main species groups, and phylogenetic relationships among some of them are not fully resolved. These frogs are primarily distributed in northern Madagascar, and most species are known from only few localities. A previous record of this genus from the Tsingy de Bemaraha (western Madagascar) is interpreted as probably due to a mislabelling and should not be considered further unless confirmed by new data. By generating this phylogenetic hypothesis and providing an updated distribution of each lineage, our findings will facilitate future species descriptions, pave the way for evolutionary studies, and provide valuable information for the urgent conservation of diamond frogs.
{"title":"Molecular taxonomic identification and species-level phylogeny of the narrow-mouthed frogs of the genus Rhombophryne (Anura: Microhylidae: Cophylinae) from Madagascar","authors":"Francesco Belluardo, Mark D. Scherz, Bárbara Santos, F. Andreone, A. Antonelli, F. Glaw, A. J. Munõz-Pajares, J. E. Randrianirina, A. P. Raselimanana, M. Vences, A. Crottini","doi":"10.1080/14772000.2022.2039320","DOIUrl":"https://doi.org/10.1080/14772000.2022.2039320","url":null,"abstract":"The study of diamond frogs (genus Rhombophryne, endemic to Madagascar) has been historically hampered by the paucity of available specimens, because of their low detectability in the field. Over the last 10 years, 13 new taxa have been described, and 20 named species are currently recognized. Nevertheless, undescribed diversity within the genus is probably large, calling for a revision of the taxonomic identification of published records and an update of the known distribution of each lineage. Here we generate DNA sequences of the mitochondrial 16S rRNA gene of all specimens available to us, revise the genetic data from public databases, and report all deeply divergent mitochondrial lineages of Rhombophryne identifiable from these data. We also generate a multi-locus dataset (including five mitochondrial and eight nuclear markers; 9844 bp) to infer a species-level phylogenetic hypothesis for the diversification of this genus and revise the distribution of each lineage. We recognize a total of 10 candidate species, two of which are identified here for the first time. The genus Rhombophryne is here proposed to be divided into six main species groups, and phylogenetic relationships among some of them are not fully resolved. These frogs are primarily distributed in northern Madagascar, and most species are known from only few localities. A previous record of this genus from the Tsingy de Bemaraha (western Madagascar) is interpreted as probably due to a mislabelling and should not be considered further unless confirmed by new data. By generating this phylogenetic hypothesis and providing an updated distribution of each lineage, our findings will facilitate future species descriptions, pave the way for evolutionary studies, and provide valuable information for the urgent conservation of diamond frogs.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 13"},"PeriodicalIF":1.9,"publicationDate":"2022-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44345078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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