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Trimeric complexes of Antp-TBP with TFIIEβ or Exd modulate transcriptional activity Antp-TBP与TFIIEβ或Exd的三聚体复合物可调节转录活性
IF 2.7 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-30 DOI: 10.1186/s41065-022-00239-8
Gustavo Jiménez-Mejía, Rubén Montalvo-Méndez, Carolina Hernández-Bautista, Claudia Altamirano-Torres, M. Vázquez, M. Zurita, D. Reséndez-Pérez
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引用次数: 1
Insights into AIM-InDel diversities in Yunnan Miao and Hani ethnic groups of China for forensic and population genetic purposes. 洞察中国云南苗族和哈尼族的 AIM-InDel 多样性,用于法医和人口遗传学目的。
IF 2.1 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-20 DOI: 10.1186/s41065-022-00238-9
Wei Cui, Shengjie Nie, Yating Fang, Man Chen, Ming Zhao, Qiong Lan, Chunmei Shen, Bofeng Zhu

Background: Ancestry informative markers are regarded as useful tools for inferring the ancestral information of an individual, which have been widely used in the criminal investigations and population genetic studies. Previously, a multiplex amplification panel containing 39 AIM-InDel loci was constructed. This study aims to investigate the genetic polymorphisms of these 39 AIM-InDel loci in Yunnan Hani and Miao ethnic groups, and to uncover their genetic affinities with reference populations based on the AIM-InDel markers.

Materials and methods: In this research, 39 AIM-InDel profiles of 203 unrelated Miao individuals and 203 unrelated Hani individuals in Yunnan province of China were acquired. Additionally, we evaluated the genetic polymorphisms of 39 InDel loci in Yunnan Miao and Hani groups. Moreover, the genetic relationships among Yunnan Miao, Hani and reference populations were also clarified based on Nei's genetic distances, pairwise fixation indexes, principal component analyses, phylogenetic analyses, and STRUCTURE analyses.

Results: Genetic diversity analyses demonstrated that these InDel loci showed varying degrees of genetic polymorphisms, and could be utilized in forensic identifications in Yunnan Miao and Hani groups. The results of principal component analyses, phylogenetic analyses and Structure analyses revealed that Yunnan Miao and Hani groups had closer genetic relationships with East Asian populations, especially with the populations from Southern China. This research enriched the genetic data of Chinese ethnic minority, and provided ancestral information of Yunnan Miao and Hani groups from the perspective of population genetics.

背景:祖先信息标记被认为是推断个体祖先信息的有用工具,已被广泛应用于犯罪调查和群体遗传研究。此前,我们构建了一个包含 39 个 AIM-InDel 位点的多重扩增面板。本研究旨在研究这 39 个 AIM-InDel 位点在云南哈尼族和苗族中的遗传多态性,并根据 AIM-InDel 标记揭示其与参考人群的遗传亲缘关系:本研究获得了中国云南省 203 个无亲缘关系的苗族个体和 203 个无亲缘关系的哈尼族个体的 39 个 AIM-InDel 图谱。此外,我们还评估了云南苗族和哈尼族中 39 个 InDel 位点的遗传多态性。此外,我们还根据内氏遗传距离、配对固定指数、主成分分析、系统发生分析和 STRUCTURE 分析,阐明了云南苗族、哈尼族和参照种群之间的遗传关系:结果:遗传多样性分析表明,这些 InDel 位点表现出不同程度的遗传多态性,可用于云南苗族和哈尼族的法医鉴定。主成分分析、系统发育分析和结构分析的结果显示,云南苗族和哈尼族与东亚人群,尤其是中国南方人群的遗传关系更为密切。该研究丰富了中国少数民族的遗传数据,从群体遗传学的角度提供了云南苗族和哈尼族的祖先信息。
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引用次数: 0
SKA3 is a prognostic biomarker and associated with immune infiltration in bladder cancer SKA3是一种预后生物标志物,与膀胱癌免疫浸润相关
IF 2.7 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-11 DOI: 10.1186/s41065-022-00234-z
Chenyang Wang, Shasha Liu, Xinhong Zhang, Yan Wang, P. Guan, Fanyou Bu, Hao Wang, Dawen Wang, Yisheng Fan, Sichuan Hou, Zhilei Qiu
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引用次数: 0
The Prevalence and Significance of Leukopenia Induced by Intravenous Iron Therapy in a Large Cohort of Females with Iron Deficiency Anemia (IDA). 缺铁性贫血 (IDA) 女性大样本中静脉注射铁剂诱发白细胞减少症的发生率及意义。
3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-11 DOI: 10.23750/abm.v93i2.11978
Vincenzo De Sanctis, Ashraf T Soliman, Mohamed A Yassin

Introduction: Iron deficiency anemia (IDA) is the most common cause of anemia in both developed and developing countries. Leukopenia is an infrequent side effect of iron therapy reported in the literature as sporadic cases.

Objective: To assess the prevalence of leukopenia, neutropenia and/or lymphocytopenia and its possible clinical impact if any, after intravenous iron therapy in adult patients with IDA.

Patients and methods: This is a retrospective study conducted in Hamad Medical Corporation, Doha (Qatar). The clinical and biochemical data of 1.567 females (mean age: 29.5 years) with IDA who attended the Hematology Clinic and were treated with intravenous (i.v.) iron therapy were collected and analysed. Complete and differential blood counts and iron profile were studied before and after i.v. iron therapy. In addition, cases who developed infections during the time of leukopenia were noted and checked for possible complications.

Results: 30 cases (1.91%) developed leukopenia,15 cases (0.95%) developed neutropenia and 12 cases (0.76%) developed lymphocytopenia. All had normal white blood cell counts before treatment. Two patients (6.66%) had infection. One had upper respiratory tract infection and the other had urinary tract infection, the latter was treated with antibiotics. There was no reported other infection during or after i.v. iron therapy.

Conclusions: Leukopenia in form of neutropenia or lymphocytopenia may occur as a side effect of i.v. iron therapy, however, its clinical significance appears to be limited.

导言:缺铁性贫血(IDA)是发达国家和发展中国家最常见的贫血原因。白细胞减少症是铁剂治疗的一种不常见的副作用,文献中仅有零星病例报道:评估IDA成人患者静脉注射铁剂治疗后白细胞减少症、中性粒细胞减少症和/或淋巴细胞减少症的发病率及其可能的临床影响:这是一项在多哈(卡塔尔)哈马德医疗公司进行的回顾性研究。研究收集并分析了 1.567 名女性 IDA 患者(平均年龄:29.5 岁)的临床和生化数据,这些患者曾在血液病诊所就诊并接受静脉注射铁剂治疗。对静脉注射铁剂治疗前后的全血细胞计数、微分血细胞计数和铁概况进行了研究。此外,还记录了在白细胞减少期间出现感染的病例,并检查了可能出现的并发症:30例(1.91%)出现白细胞减少症,15例(0.95%)出现中性粒细胞减少症,12例(0.76%)出现淋巴细胞减少症。所有患者在治疗前白细胞计数均正常。两名患者(6.66%)出现感染。其中一人患有上呼吸道感染,另一人患有泌尿道感染,后者接受了抗生素治疗。在静脉注射铁剂治疗期间或之后,没有其他感染的报道:结论:中性粒细胞减少或淋巴细胞减少的白细胞减少症可能是静脉注射铁剂治疗的副作用,但其临床意义似乎有限。
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引用次数: 0
N6-methyladenosine-related lncRNAs is a potential marker for predicting prognosis and immunotherapy in ovarian cancer n6 -甲基腺苷相关lncrna是预测卵巢癌预后和免疫治疗的潜在标志物
IF 2.7 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-03-18 DOI: 10.1186/s41065-022-00222-3
Xin Nie, Jichun Tan
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引用次数: 3
LPAR2 correlated with different prognosis and immune cell infiltration in head and neck squamous cell carcinoma and kidney renal clear cell carcinoma LPAR2与头颈部鳞状细胞癌和肾透明细胞癌的不同预后及免疫细胞浸润相关
IF 2.7 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-03-04 DOI: 10.1186/s41065-022-00229-w
K. Sun, Riyu Chen, Jing-zhang Li, Zhanxiong Luo
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引用次数: 0
Bringing the Second Event to Light (on a Light Box): Cerebral Vasospasm After Aneurysmal Rupture. 让第二事件(在灯箱上)发光:动脉瘤破裂后的脑血管痉挛。
IF 3.5 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-03-04 DOI: 10.1007/s12028-022-01456-9
Eelco F M Wijdicks
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引用次数: 0
Adaptation of the Oxygen Sensing System during Lung Development. 肺发育过程中氧传感系统的适应性
3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2022-02-18 eCollection Date: 2022-01-01 DOI: 10.1155/2022/9714669
Karin M Kirschner, Simon Kelterborn, Herrmann Stehr, Johanna L T Penzlin, Charlotte L J Jacobi, Stefanie Endesfelder, Miriam Sieg, Jochen Kruppa, Christof Dame, Lina K Sciesielski

During gestation, the most drastic change in oxygen supply occurs with the onset of ventilation after birth. As the too early exposure of premature infants to high arterial oxygen pressure leads to characteristic diseases, we studied the adaptation of the oxygen sensing system and its targets, the hypoxia-inducible factor- (HIF-) regulated genes (HRGs) in the developing lung. We draw a detailed picture of the oxygen sensing system by integrating information from qPCR, immunoblotting, in situ hybridization, and single-cell RNA sequencing data in ex vivo and in vivo models. HIF1α protein was completely destabilized with the onset of pulmonary ventilation, but did not coincide with expression changes in bona fide HRGs. We observed a modified composition of the HIF-PHD system from intrauterine to neonatal phases: Phd3 was significantly decreased, while Hif2a showed a strong increase and the Hif3a isoform Ipas exclusively peaked at P0. Colocalization studies point to the Hif1a-Phd1 axis as the main regulator of the HIF-PHD system in mouse lung development, complemented by the Hif3a-Phd3 axis during gestation. Hif3a isoform expression showed a stepwise adaptation during the periods of saccular and alveolar differentiation. With a strong hypoxic stimulus, lung ex vivo organ cultures displayed a functioning HIF system at every developmental stage. Approaches with systemic hypoxia or roxadustat treatment revealed only a limited in vivo response of HRGs. Understanding the interplay of the oxygen sensing system components during the transition from saccular to alveolar phases of lung development might help to counteract prematurity-associated diseases like bronchopulmonary dysplasia.

在妊娠过程中,氧气供应最剧烈的变化发生在出生后开始通气时。由于早产儿过早暴露于高动脉氧压会导致特征性疾病,我们研究了发育中肺部氧传感系统及其靶标--低氧诱导因子(HIF)调控基因(HRGs)的适应性。通过整合体内外模型中的 qPCR、免疫印迹、原位杂交和单细胞 RNA 测序数据,我们描绘了氧传感系统的详细图景。随着肺通气的开始,HIF1α蛋白完全失稳,但与真正的HRGs的表达变化并不一致。我们观察到,从宫内到新生儿期,HIF-PHD 系统的组成发生了变化:Phd3 明显降低,而 Hif2a 则有较强的增长,Hif3a 同工酶 Ipas 在 P0 阶段达到峰值。共定位研究表明,Hif1a-Phd1 轴是小鼠肺发育过程中 HIF-PHD 系统的主要调节器,而妊娠期的 Hif3a-Phd3 轴则是其补充。Hif3a同工酶的表达在囊泡和肺泡分化期表现出逐步适应的过程。在强缺氧刺激下,肺脏体外器官培养物在每个发育阶段都显示出正常的HIF系统。全身性缺氧或洛伐司他(roxadustat)处理的方法只显示了HRGs的有限体内反应。了解肺发育从囊泡阶段向肺泡阶段过渡期间氧传感系统各组成部分之间的相互作用,可能有助于应对与早产有关的疾病,如支气管肺发育不良。
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引用次数: 0
Risk of Stillbirth for Fetuses With Specific Birth Defects. 有特定出生缺陷的胎儿死产的风险。
3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2020-01-01 DOI: 10.1097/AOG.0000000000003614
Dominique Heinke, Eirini Nestoridi, Sonia Hernandez-Diaz, Paige L Williams, Janet W Rich-Edwards, Angela E Lin, Carla M Van Bennekom, Allen A Mitchell, Wendy N Nembhard, Ruth C Fretts, Drucilla J Roberts, C Wes Duke, Suzan L Carmichael, Mahsa M Yazdy

Objective: To estimate the risk of stillbirth (fetal death at 20 weeks of gestation or more) associated with specific birth defects.

Methods: We identified a population-based retrospective cohort of neonates and fetuses with selected major birth defects and without known or strongly suspected chromosomal or single-gene disorders from active birth defects surveillance programs in nine states. Abstracted medical records were reviewed by clinical geneticists to confirm and classify all birth defects and birth defect patterns. We estimated risks of stillbirth specific to birth defects among pregnancies overall and among those with isolated birth defects; potential bias owing to elective termination was quantified.

Results: Of 19,170 eligible neonates and fetuses with birth defects, 17,224 were liveborn, 852 stillborn, and 672 electively terminated. Overall, stillbirth risks ranged from 11 per 1,000 fetuses with bladder exstrophy (95% CI 0-57) to 490 per 1,000 fetuses with limb-body-wall complex (95% CI 368-623). Among those with isolated birth defects not affecting major vital organs, elevated risks (per 1,000 fetuses) were observed for cleft lip with cleft palate (10; 95% CI 7-15), transverse limb deficiencies (26; 95% CI 16-39), longitudinal limb deficiencies (11; 95% CI 3-28), and limb defects due to amniotic bands (110; 95% CI 68-171). Quantified bias analysis suggests that failure to account for terminations may lead to up to fourfold underestimation of the observed risks of stillbirth for sacral agenesis (13/1,000; 95% CI 2-47), isolated spina bifida (24/1,000; 95% CI 17-34), and holoprosencephaly (30/1,000; 95% CI 10-68).

Conclusion: Birth defect-specific stillbirth risk was high compared with the U.S. stillbirth risk (6/1,000 fetuses), even for isolated cases of oral clefts and limb defects; elective termination may appreciably bias some estimates. These data can inform clinical care and counseling after prenatal diagnosis.

目的估算与特定出生缺陷相关的死胎(妊娠 20 周或更长时间的胎儿死亡)风险:方法:我们从美国九个州的出生缺陷监测项目中筛选出患有特定主要出生缺陷的新生儿和胎儿,这些新生儿和胎儿没有已知或强烈怀疑的染色体或单基因疾病。临床遗传学家对抽取的医疗记录进行了审查,以确认所有出生缺陷和出生缺陷模式并对其进行分类。我们估算了整体妊娠和孤立出生缺陷妊娠中因出生缺陷导致死胎的风险,并对选择性终止妊娠可能造成的偏差进行了量化:在 19170 名符合条件的新生儿和出生缺陷胎儿中,活产 17224 例,死产 852 例,选择性终止妊娠 672 例。总体而言,死胎风险从膀胱外翻的千分之十一(95% CI 0-57)到肢体-体壁复合体的千分之四百九十(95% CI 368-623)不等。在不影响主要重要器官的孤立出生缺陷中,观察到唇裂伴腭裂(10;95% CI 7-15)、横向肢体缺损(26;95% CI 16-39)、纵向肢体缺损(11;95% CI 3-28)和羊膜带导致的肢体缺损(110;95% CI 68-171)的风险升高(每千名胎儿)。量化偏差分析表明,如果不考虑终止妊娠,可能会导致骶骨发育不全(13/1,000;95% CI 2-47)、孤立性脊柱裂(24/1,000;95% CI 17-34)和全瘫(30/1,000;95% CI 10-68)的死胎风险被低估四倍:结论:与美国的死胎风险(6/1000)相比,出生缺陷特异性死胎风险很高,即使是孤立的口腔裂隙和肢体缺陷病例;选择性终止妊娠可能会明显偏离某些估计值。这些数据可为产前诊断后的临床护理和咨询提供参考。
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引用次数: 0
Identification of key microRNAs in the carotid arteries of ApoE−/− mice exposed to disturbed flow 暴露于血流紊乱的ApoE−/-小鼠颈动脉中关键微小RNA的鉴定
IF 2.7 3区 生物学 Q3 GENETICS & HEREDITY Pub Date : 2019-11-05 DOI: 10.1186/s41065-019-0112-x
Xinzhou Wang, Shuibo Gao, Liping Dai, Zhentao Wang, Hong Wu
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引用次数: 1
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Hereditas
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