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[The role of long non-coding RNAs in hematologic malignancies]. [长链非编码rna在血液恶性肿瘤中的作用]。
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-11-01 DOI: 10.16288/J.YCZZ.15-261
H. Wanli, G. Ai
With the rapid development of molecular biology technology, researchers have got much deeper understanding of the role of long non-coding RNA (lncRNA). It is not only indispensable for biological processes, but also plays an important role in human diseases especially in tumor. Previous studies have shown that a variety of lncRNAs are closely associated with hematologic malignancies. These lncRNAs are involved in diseases through diverse functions including affecting the expression of tumor suppressor gene p15, regulating p53 protein function, and interacting with miRNAs. In this review, we summarize the hematological tumor-associated lncRNAs and focus on p15, p53 and miRNA-related lncRNAs as well as the role of their interaction in hematological malignancies, which may provide a comprehensive understanding of the role of hematological tumor-associated lncRNAs and some insights for research, diagnosis and treatment of hematologic malignancies.
随着分子生物学技术的飞速发展,研究人员对长链非编码RNA (lncRNA)的作用有了更深入的认识。它不仅在生物过程中不可或缺,而且在人类疾病特别是肿瘤中也起着重要作用。以往的研究表明,多种lncrna与血液恶性肿瘤密切相关。这些lncRNAs通过影响肿瘤抑制基因p15的表达、调节p53蛋白功能、与mirna相互作用等多种功能参与疾病。本文综述了血液学肿瘤相关lncrna,重点介绍了p15、p53和mirna相关lncrna及其相互作用在血液学恶性肿瘤中的作用,以期对血液学肿瘤相关lncrna的作用有一个全面的认识,为血液学恶性肿瘤的研究、诊断和治疗提供一些见解。
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引用次数: 1
[Genetic basis of immune response of lymphocyte-like cells in the mucosal immune system of Lampetra japonica]. [日本七鳃鳗粘膜免疫系统淋巴细胞样细胞免疫应答的遗传基础]。
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-11-01 DOI: 10.16288/j.yczz.15-108
Xin Liu, Xueying Song, Xiaoping Zhang, Ying-lun Han, Ting Zhu, R. Xiao, Qing-wei Li
In recent years, the antigen recognition mechanism based on variable lymphocyte receptors (VLRs) was found in agnathan lamprey. To illuminate the genetic basis of immune response of lymphocyte-like cells in the mucosal immune system of lamprey and explore the evolutionary relationship of adaptive immune responses between the jawless and jawed vertebrates, we constructed cDNA libraries of lamprey (Lampetra japonica) gills before and after stimulation, and then performed high-throughput transcriptome sequencing and analysis. Through functional annotation of 88 525 assembled unigenes, 21 704 and 9769 unigenes were annotated in Gene Ontology (GO) and Kyto Encyclopedia of Genes and Genomes (KEGG) databases, respectively. Among 999 unigenes involved in multiple pathways of immune system, 184 unigenes were highly homologous to 51 TCR (T cell receptor) and BCR (B cell receptor) signalling molecules in higher vertebrates, indicating that molecules involved in adaptive immune signalling pathways in higher vertebrates also exist in lampreys. In addition, identification of five VLRA, seven VLRB and four VLRC molecules suggest that at least three types of lymphocyte subsets are distributed in lamprey gill mucosal immune tissues. The results of real-time fluorescence quantitative PCR showed that the expression levels of Lck, Fyn and Zap70 were up-regulated after immune stimulation while those of Syk, Btk and Blnk were not changed significantly, indicating the activation of TCR-like signal transduction pathway after antigen stimulation in lamprey gill tissues. Our studies preliminaryly proved that two parallel adaptive immune systems in jawless and jawed vertebrates have common genetic basis, and also provided valuable clues to the exploration of signalling processes of VLRA⁺, VLRB⁺, and VLRC⁺ lymphocyte-like cells in response to antigens.
近年来在七鳃鳗中发现了基于可变淋巴细胞受体(VLRs)的抗原识别机制。为了阐明七鳃鳗粘膜免疫系统中淋巴细胞样细胞免疫应答的遗传基础,探索无颌和有颌脊椎动物之间适应性免疫应答的进化关系,我们构建了刺激前后七鳃鳗(Lampetra japonica)鳃的cDNA文库,并进行了高通量转录组测序和分析。通过对88 525个组装的unigenes进行功能标注,分别在Gene Ontology (GO)和Kyto Encyclopedia of Genes and Genomes (KEGG)数据库中标注了21 704个和9769个unigenes。在参与免疫系统多通路的999个unique igenes中,184个unique igenes与51个高等脊椎动物的TCR (T细胞受体)和BCR (B细胞受体)信号分子高度同源,说明参与高等脊椎动物适应性免疫信号通路的分子在七鳃鳗中也存在。此外,5个VLRA、7个VLRB和4个VLRC分子的鉴定表明,在七鳃鳗鳃黏膜免疫组织中至少分布着3种类型的淋巴细胞亚群。实时荧光定量PCR结果显示,免疫刺激后Lck、Fyn和Zap70的表达水平上调,而Syk、Btk和Blnk的表达水平变化不明显,表明抗原刺激后七鳃鱼鳃组织中tcr样信号转导通路被激活。我们的研究初步证明了无颌和有颌脊椎动物两种平行的适应性免疫系统具有共同的遗传基础,也为探索VLRA +、VLRB +、VLRC +淋巴细胞样细胞对抗原反应的信号传导过程提供了有价值的线索。
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引用次数: 2
Resurrection of Hereditas, a journal with almost 100 years of tradition 《赫里达斯的复活》一本有近百年历史的杂志
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-10-22 DOI: 10.1186/s41065-015-0003-8
S. Baumgartner
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引用次数: 1
Analysis of genetic diversity of Tunisian caprifig (Ficus carica L.) accessions using simple sequence repeat (SSR) markers 利用SSR标记分析突尼斯无花果(Ficus carica L.)遗传多样性
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-10-22 DOI: 10.1186/s41065-015-0002-9
Awatef Essid, F. Aljane, A. Ferchichi, J. Hormaza
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引用次数: 29
The Trp719Arg polymorphism of the KIF6 gene and coronary heart disease risk: systematic review and meta-analysis KIF6基因Trp719Arg多态性与冠心病风险:系统回顾和荟萃分析
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-10-22 DOI: 10.1186/s41065-015-0004-7
David Ruiz-Ramos, Yazmín Hernández-Díaz, C. Tovilla-Zárate, I. Juárez-Rojop, M. López-Narváez, T. González-Castro, M. E. Torres-Hernández, M. Baños-González
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引用次数: 3
Cloning and functional analysis of the cotton Trihelix transcription factor GhGT29 棉花三螺旋转录因子GhGT29的克隆及功能分析
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-28 DOI: 10.16288/J.YCZZ.15-320
L. Yue, L. Xiaodong, D. Yongmei, X. Zongming, Shou-yi Chen
Trihelix transcription factors are important proteins involved in response to abiotic stresses in plants. Understanding the molecular mechanisms of Trihelix in cottons will lay the foundation to improve stress tolerance by gene engineering. In this study, a gene encoding Trihelix transcription factor was isolated in upland cottons using reverse transcription PCR according to bioinformatic analysis. The gene was named as GhGT29 (GenBank accession No. JQ013097), which was 1 092 bp, contained a 1 089 bp open reading frame and encoded a protein of 363 amino acids with a predicted molecular weight of 40.9 kDa and a isoelectric point of 5.45. SMART analysis showed GhGT29 contained one typical SANT motif. Phylogenetic analysis showed that GhGT29 belonged to the SH4 subfamily of the Trihelix family and was most closely related to AtSH4-like1 and AtSH4-like2. Quantitative real-time PCR (qRT-PCR) analysis revealed that GhGT29 was induced by high salt, drought, cold and abscisic acid. The expression profile also revealed that GhGT29 was constitutively expressed in all tested tissues, such as roots, stems, leaves, flowers, ovules (0 DPA) and fibers (12 DPA). The expression level of GhGT29 was the highest in flowers and the lowest in stems. Using the Arabidopsis protoplasts assay system, we found that the GhGT29 protein was located in cell nuclei and had trans-activation activity. These results revealed that GhGT29 might be involved in the regulation of stress resistance-related genes in stress signaling pathways in upland cottons.
三螺旋转录因子是植物响应非生物胁迫的重要蛋白质。了解棉花三螺旋结构的分子机制将为通过基因工程提高棉花的抗逆性奠定基础。本研究通过生物信息学分析,利用反转录PCR技术从陆地棉中分离到一个编码三螺旋转录因子的基因。该基因被命名为GhGT29 (GenBank登录号:GhGT29)。JQ013097)全长1 092 bp,包含1 089 bp的开放阅读框,编码363个氨基酸,预测分子量为40.9 kDa,等电点为5.45。SMART分析显示GhGT29含有一个典型的SANT基序。系统发育分析表明,GhGT29属于Trihelix家族的SH4亚家族,与AtSH4-like1和AtSH4-like2亲缘关系最为密切。实时荧光定量PCR (qRT-PCR)分析显示,GhGT29受高盐、干旱、寒冷和脱落酸诱导。表达谱还显示GhGT29在根、茎、叶、花、胚珠(0 DPA)和纤维(12 DPA)等所有组织中均有组成性表达。GhGT29在花中的表达量最高,茎中的表达量最低。利用拟南芥原生质体分析系统,我们发现GhGT29蛋白位于细胞核中,具有反式活化活性。这些结果表明,GhGT29可能参与了旱棉胁迫信号通路中抗逆性相关基因的调控。
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引用次数: 2
绿色荧光蛋白在α-1,3半乳糖基转移酶敲除猪组织器官的表达分析 绿色荧光蛋白在α-1,3半乳糖基转移酶敲除猪组织器官的表达分析
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-08-12 DOI: 10.16288/J.YCZZ.15-160
李智方, 冯冲, 纪慧丽, 石宁宁, 宋小凤, 赵勤丽, 龙川, 潘登科, 杨小淦
The pig is an ideal source to provide organs because its organ size and physiology are similar to humans. However, an acute rejection will ensue after pig-to-human xenotransplantation. The α-1,3 galactosyltransferase gene knockout (GTKO) pigs were generated in recent years, and could solve the problem of hyperacute rejection. But due to lack of reporting genes, the rejection status of cells and organs post pig-to-human xenotransplantation cannot be visualized. In this study, we introduced the enhanced green fluorescent protein (EGFP) gene driven by the CAG promoter into GTKO porcine ear fibroblasts. Then we produced transgenic pigs expressing the EGFP gene by nuclear transfer technology. Expression levels of EGFP in different tissues and organs of the cloned pig were investigated by Nightsea DFP-1 Fluorescent Protein Flashlight, fluorescence microscope and quantitative PCR assays. The results showed that the protein and transcript of EGFP were expressed in all tissues and organs of the GTKO pig, but the expression was weak in the liver and central nervous system. In conclusion, we have successfully produced the transgenic GTKO pigs expressing EGFP in all tested tissues and organs, which builds up a good basis to track transplanted cells or tissues.
猪是提供器官的理想来源,因为它的器官大小和生理机能与人类相似。然而,猪与人异种移植后会出现急性排斥反应。α-1,3半乳糖转移酶基因敲除(GTKO)猪是近年来出现的,可以解决超急性排斥反应问题。但由于缺乏报告基因,细胞和器官在猪到人异种移植后的排斥状态无法可视化。本研究将CAG启动子驱动的增强型绿色荧光蛋白(EGFP)基因导入GTKO猪耳成纤维细胞。然后通过核移植技术制备表达EGFP基因的转基因猪。利用Nightsea DFP-1荧光蛋白手电筒、荧光显微镜和定量PCR检测EGFP在克隆猪不同组织器官中的表达水平。结果表明,EGFP蛋白及其转录本在GTKO猪的所有组织器官中均有表达,但在肝脏和中枢神经系统中表达较弱。综上所述,我们成功培育出在所有组织器官中表达EGFP的转基因GTKO猪,为追踪移植细胞或组织奠定了良好的基础。
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引用次数: 0
Wild Estonian and Russian sea trout (Salmo trutta) in Finnish coastal sea trout catches: results of genetic mixed-stock analysis 芬兰沿海捕捞的野生爱沙尼亚和俄罗斯海鳟(Salmo trutta):遗传混合种群分析的结果
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-14 DOI: 10.1111/hrd2.00070
Marja-Liisa Koljonen, Riho Gross, Jarmo Koskiniemi

For responsible fisheries management of threatened species, it is essential to know the composition of catches and the extent to which fisheries exploit weak wild populations. The threatened Estonian, Finnish and Russian sea trout populations in the Gulf of Finland are targets of mixed-stock fisheries. The fish may originate from rivers with varying production capacities, from different countries, and they may also have either a wild or hatchery origin. In order to resolve the composition of Finnish coastal sea trout catches, we created a standardized baseline dataset of 15 DNA microsatellite loci for 59 sea trout populations around the Gulf of Finland and tested its resolution for mixed-stock analysis of 1372 captured fish. The baseline dataset provided sufficient resolution for reliable mixture analysis at regional group level, and also for most of the individual rivers stocks. The majority (76–80%) of the total catch originated from Finnish sea trout populations, 6–9% came from Russian and 12–15% from Estonian populations. Nearly all Finnish trout in the catch were of hatchery origin, while the Russian and Estonian trout were mostly of wild origin. The proportion of fish in the Finnish catches that originated from rivers with natural production was at least one fifth (22%, 19–23%). Two different spotting patterns were observed among the captured trout, with a small and sparsely spotted form being markedly more common among individuals of Russian (28%) and Estonian origin (22%) than among fish assigned to a Finnish origin (0.7%).

为了对受威胁物种进行负责任的渔业管理,必须了解渔获量的组成和渔业利用脆弱野生种群的程度。芬兰湾受到威胁的爱沙尼亚、芬兰和俄罗斯海鳟鱼种群是混合种群渔业的目标。这些鱼可能来自不同国家、具有不同生产能力的河流,也可能来自野生或孵化场。为了解决芬兰沿海海鳟鱼捕捞的组成,我们为芬兰湾周围的59个海鳟鱼种群创建了15个DNA微卫星位点的标准化基线数据集,并测试了其对1372条捕获鱼的混合种群分析的分辨率。基线数据集提供了足够的分辨率,可以在区域群水平上进行可靠的混合分析,也可以对大多数单个河流种群进行分析。总捕捞量的大多数(76-80%)来自芬兰海鳟种群,6-9%来自俄罗斯,12-15%来自爱沙尼亚种群。几乎所有捕获的芬兰鳟鱼都来自孵化场,而俄罗斯和爱沙尼亚的鳟鱼大多来自野生。在芬兰的渔获量中,来自自然生产的河流的鱼的比例至少为五分之一(22%,19-23%)。在捕获的鳟鱼中观察到两种不同的斑点模式,小而稀疏的斑点形式在俄罗斯(28%)和爱沙尼亚(22%)的个体中明显比在芬兰(0.7%)的个体中更常见。
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引用次数: 29
An improved MALDI-TOF mass spectrometry procedure and a novel DNA marker for identifying over-expressed Bx7 glutenin protein subunit in wheat 一种改进的MALDI-TOF质谱方法和一种鉴定小麦过表达Bx7谷蛋白亚基的新型DNA标记
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-14 DOI: 10.1111/hrd2.00069
Ke Wang, Shahidul Islam, Junhong Ma, Masood Anwar, Jing Chen, Yueming Yan, Rudi Appels, Wujun Ma

Wheat bread-making quality is mainly determined by glutenin proteins in the grain, which exist in a wide range of variable alleles with differential influence on processing attributes. A recently identified allele, Bx7 over-expression (Bx7oe), has been showing highly significant positive effects on wheat dough strength over the normally expressed Bx7 allele. SDS-PAGE and normal RP-HPLC procedures failed to separate the two alleles. In the current study, an extensively optimised MALDI-TOF based procedure and a refined DNA based marker for efficiently differentiating Bx7oe from normal Bx7 allele were established. Results indicated that the MALDI-TOF procedure is cost effective, high throughput, and proven reliable, while the refined PCR marker only amplifies Bx7oe allele, a clear advantage over the previously developed codominant marker.

小麦面包的品质主要由籽粒中的谷蛋白决定,谷蛋白存在于广泛的可变等位基因中,对加工属性有不同的影响。最近发现的一个等位基因Bx7过表达(Bx7oe)对小麦面团强度的影响显著高于正常表达的Bx7等位基因。SDS-PAGE和常规反相高效液相色谱法无法分离这两个等位基因。在目前的研究中,我们建立了一个广泛优化的基于MALDI-TOF的程序和一个改进的基于DNA的标记,用于有效区分Bx7oe和正常Bx7等位基因。结果表明,MALDI-TOF方法具有成本效益、高通量和可靠性,而改进的PCR标记仅扩增Bx7oe等位基因,与先前开发的共显性标记相比具有明显优势。
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引用次数: 4
Genetic polymorphism of 15 Y chromosomal STR loci and haplotypes of Henan Han population 河南汉族人群15个Y染色体STR位点的遗传多态性及单倍型分析
IF 2.7 3区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-14 DOI: 10.1111/hrd2.00067
Xiu-Hua Zhang, Wen-Bo Zhang, Xue-Hui Fan

We studied and established a DNA database of 15 Y-STRs (DYS438, DYS446, DYS391, DYS390, DYS458, DYS534, DYS426, DYS626, DYS504, DYS505, DYS576, DYS532, DYS594, DYS522, DYS540) in a population sample of 102 unrelated, healthy, male individuals of Henan Han population. Allelic frequencies and statistical parameters of Han population were calculated. Totally 90 alleles were observed, with the corresponding allelic frequencies ranging from 0.0098 to 0.9020. 102 haplotypes were found in the studied group, the haplotype diversity for 15 Y-STR loci was 1. The results of present study were valuable for human identification and paternity tests routine forensic applications in the region.

研究并建立了河南省汉族人群102例无亲缘关系健康男性个体的15个Y-STRs (DYS438、DYS446、DYS391、DYS390、DYS458、DYS534、DYS426、DYS626、DYS504、DYS505、DYS576、DYS532、DYS594、DYS522、DYS540) DNA数据库。计算汉族人群的等位基因频率和统计参数。共检测到90个等位基因,对应的等位基因频率范围为0.0098 ~ 0.9020。共发现102个单倍型,其中15个Y-STR基因座的单倍型多样性为1。本研究的结果对人类鉴定和亲子鉴定在该地区的常规法医应用具有价值。
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引用次数: 3
期刊
Hereditas
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