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Morphology of male genitalia, legs, and wing venation reveals the classification of Mesozoic Zoraptera (Insecta). 雄性生殖器、腿和翅脉的形态揭示了中生代昆虫目的分类。
IF 2.6 2区 生物学 Q1 ZOOLOGY Pub Date : 2026-02-07 DOI: 10.1186/s12983-025-00595-x
Petr Kočárek, Ivona Kočárková, Robin Kundrata

The current classification of extant Zoraptera is based on the results of molecular phylogeny combined with the morphology of male genitalia and supplemented by the characters on the male abdomen and the number of metatibial spurs. However, fossil representatives of Zoraptera have not yet been classified into the modern system, and most of them remain in the catch-all genus Zorotypus Silvestri, 1913, because the genitalia are either not observable or have not been examined in detail. In this study, for the first time, we describe and critically evaluate the male genitalia and other principal diagnostic characters of all available Mesozoic Zoraptera. Our results have led to the first proposal of a generic classification of Mesozoic Zoraptera. We describe two new genera, Cretozoros gen. nov. and Burmazoros gen. nov., reinstate Paleospinosus Kaddumi, 2005, stat. restit. from synonymy with the subgenus Octozoros Engel, 2003 (in Zorotypus), and elevate Octozoros Engel, 2003 to the genus level. Cretozoros gen. nov., Paleospinosus Kaddumi, 2005, stat. restit., and Octozoros stat. nov. are classified in Spiralizoridae: Latinozorinae, whereas Burmazoros gen. nov. and Xenozorotypus Engel & Grimaldi, 2002 are classified in Zorotypidae: Zorotypinae. Altogether, it was possible to classify nine of the 11 currently recognized species of Mesozoic Zoraptera. To evaluate the phylogenetic relationships of fossil zorapterans, including the newly established taxa, we estimated the evolutionary histories of selected morphological features using ancestral character state reconstruction. The classification of Mesozoic Zoraptera within the modern system enables us to better understand the early evolution of this insect order.

目前对现存琐翅目的分类是根据分子系统发育的结果结合雄性生殖器的形态,并辅以雄性腹部的特征和跖刺的数量。然而,琐翅目的化石代表尚未被划入现代系统,它们中的大多数仍然属于Zorotypus Silvestri, 1913,因为生殖器要么不能观察到,要么没有被详细检查过。在这项研究中,我们首次描述和批判性地评价了所有已知的中生代琐翅目的雄性生殖器和其他主要诊断特征。我们的研究结果首次提出了中生代翅目的属分类。我们描述了两个新属,Cretozoros gen. nov和Burmazoros gen. nov., reinstate palespinosus kadumi, 2005, stat. restit。从与Octozoros Engel亚属同义(在Zorotypus中),并将Octozoros Engel, 2003提升到属水平。Cretozoros gen. nov.,古脊椎动物kadumi, 2005, stat. restit。,和Octozoros stat11 .被归为Spiralizoridae: Latinozorinae,而Burmazoros gen. 11 .和Xenozorotypus Engel & Grimaldi, 2002被归为Zorotypidae: Zorotypinae。总的来说,目前已知的11种中生代Zoraptera中有9种是可以分类的。为了评估化石zorapterans的系统发育关系,包括新建立的分类群,我们使用祖先特征状态重建估计了一些形态特征的进化史。在现代系统中对中生代琐翅目的分类使我们能够更好地理解这一昆虫目的早期进化。
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引用次数: 0
Where the wolf roams: ecological preferences and wild prey association in a changing Mediterranean landscape. 狼出没的地方:不断变化的地中海景观中的生态偏好和野生猎物关联。
IF 2.6 2区 生物学 Q1 ZOOLOGY Pub Date : 2026-02-05 DOI: 10.1186/s12983-026-00598-2
Maria Buglione, Domenico Fulgione, Tiziano Trasmondo, Benedetta De Francesco, Gabriele de Filippo, Eleonora Rivieccio

The wolf (Canis lupus) is a species of great conservation interest and has recently highlighted management challenges throughout Europe. Over the past 50 years, the establishment of National Parks, forest cover changes as well as the expansion of wild ungulates seem to have played a crucial role in shaping the demographic trend of the wolf. We investigated prey-predator associations in the Cilento, Vallo di Diano e Alburni National Park (Southern Italy), one of the most ecologically significant areas contributing to the recovery of wolf in Southern Apennine. During the wolf bottleneck in the 70's, the protected area hosted only a few wolves and wild prey were scarce, while nowadays the wolf population has exceeded two hundred individuals, the wild boar number has increased significantly, and both roe deer and red deer are steadily rising following reintroduction actions. We aim to examine the relationship between the wolf population and its three primary wild prey considering the environmental changes that have occurred over the past few decades to underpin the current and future complex ecological relationships in Mediterranean forest ecosystems. Overall, our study lays the groundwork for future management strategies aimed at reconciling large carnivore conservation with sustainable forest use and human-wildlife coexistence.

狼(Canis lupus)是一种非常有保护价值的物种,最近在整个欧洲都突出了管理挑战。在过去的50年里,国家公园的建立,森林覆盖的变化以及野生有蹄类动物的扩张似乎在塑造狼的人口趋势方面发挥了至关重要的作用。我们调查了意大利南部的Cilento, Vallo di Diano e Alburni国家公园的捕食者-捕食者关系,该公园是亚平宁南部狼恢复最重要的生态区域之一。在70年代的狼瓶颈时期,保护区内狼数量很少,野生猎物也很少,而现在狼的数量已经超过了200只,野猪的数量也有了明显的增加,鹿和马鹿的数量也在不断增加。我们的目标是研究狼种群与其三种主要野生猎物之间的关系,考虑到过去几十年发生的环境变化,以支持地中海森林生态系统当前和未来复杂的生态关系。总的来说,我们的研究为未来的管理策略奠定了基础,旨在协调大型食肉动物保护与可持续森林利用和人类与野生动物的共存。
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引用次数: 0
Transcriptomic basis underlying the evolution of female horn plasticity in scarab beetles. 金龟子雌性角可塑性进化的转录组学基础。
IF 2.6 2区 生物学 Q1 ZOOLOGY Pub Date : 2026-02-05 DOI: 10.1186/s12983-026-00597-3
Cuicui Qi, Wenqing Zhang, Yonggang Hu

Background: Exaggerated traits in insects often evolve through nutrition-sensitive growth, yet studies have focused largely on male exaggeration widespread in nature, leaving the developmental and evolutionary basis of female exaggeration and the extent to which plasticity differs between sexes poorly understood.

Results: Here, we investigated the transcriptomic basis of female horn plasticity in three Onthophagus beetles that differ in horn morphology and nutritional responsiveness. Phylogenetic analyses indicate that rudimentary female horns represent the ancestral condition, with exaggerated, nutrition-sensitive horns evolving in derived lineages. Comparative transcriptomics reveal that enhanced female horn plasticity arises primarily through the recruitment and modulation of conserved regulatory networks, with limited contributions from taxon-restricted genes. Despite the shared reliance on conserved modules in two species with enhanced female horn plasticity, the transcriptional repertoires underlying horn plasticity are largely lineage-specific. In O. rectecornutus, where both sexes bear exaggerated horns, sex comparisons demonstrate that males and females rely on the expression of largely distinct gene sets, with only a small fraction of shared nutrition-responsive genes.

Conclusions: Together, our results show that exaggerated female horns arise through a mosaic of conserved and lineage-specific regulatory mechanisms, with strong sex bias in transcriptional control. More generally, our findings highlight how conserved developmental toolkits can be rewired in lineage- and sex-specific ways to evolve novel, plastic, and exaggerated traits.

背景:昆虫的夸张特征通常是通过营养敏感型生长进化而来的,然而研究主要集中在自然界中普遍存在的雄性夸张,而对雌性夸张的发育和进化基础以及性别间可塑性差异的程度知之甚少。结果:本文研究了三种食蚁兽角形态和营养反应不同的雌性角可塑性的转录组学基础。系统发育分析表明,原始的雌性角代表了祖先的条件,在派生谱系中进化出了夸张的、营养敏感的角。比较转录组学显示,雌性角的可塑性增强主要是通过招募和调节保守的调节网络产生的,而分类群限制基因的贡献有限。尽管两种雌性角可塑性增强的物种都依赖于保守的模块,但角可塑性的转录谱在很大程度上是谱系特异性的。在O. rectecornutus中,两性都有夸张的角,性别比较表明,雄性和雌性依赖于很大程度上不同的基因集的表达,只有一小部分共享的营养反应基因。综上所述,我们的研究结果表明,雌性角的出现是通过一系列保守的和谱系特异性的调节机制,在转录控制中存在强烈的性别偏见。更一般地说,我们的发现强调了保守的发育工具包如何以谱系和性别特定的方式重新连接,以进化出新颖的、可塑的和夸张的特征。
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引用次数: 0
International workshop report on "Animal resilience and organismal response to environmental change: insights from basal metazoans", Tutzing (Germany), 22-25 September 2025. 国际研讨会报告“动物恢复力和对环境变化的有机体反应:来自基础后生动物的见解”,图津(德国),2025年9月22-25日。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2026-01-25 DOI: 10.1186/s12983-025-00592-0
Kim L de Luca,Yamini Ravichandran,Melanie Dörr,Christian R Voolstra
The 2025 Tutzing Workshop, held at the Evangelische Akademie on the shores of Lake Starnberg, continued a long tradition of highly integrative meetings focused on the biology and evolution of basal metazoans. The meeting was organized by Christian R. Voolstra (University of Konstanz, Germany) and Ulrich Technau (University of Vienna, Austria), with kind support from the German Research Foundation (DFG). Building on the successful 2023 event, this year's symposium brought together close to 100 participants from Europe, North America, Asia, and Australia, representing newest research and scientific insight ranging from molecular evolution and functional genomics to ecology, developmental biology, and symbiosis. The central theme "Animal resilience and organismal response to environmental change: insights from basal metazoans" reflects an ongoing effort to leverage early-branching animals such as cnidarians (hydrozoans, anemones, jellyfish, corals), sponges, and ctenophores to address fundamental questions about the origins of multicellularity, the mechanisms of tissue regeneration, and the processes by which organisms adapt to environmental change. The symposium was structured around thematic sessions, poster presentations, roundtable discussions, and an invited keynote lecture. Scientific highlights included new genome assemblies, advances in single-cell transcriptomics, insights into epigenetic regulation and transposable element activity, as well as exciting discoveries about nervous system evolution, biomechanics of tissue regeneration, and immune responses in cnidarians. Beyond the empirical advances, the meeting fostered interdisciplinary discussion and outlined clear priorities for future collaborative research.
在施塔恩贝格湖畔的Evangelische学院举行的2025年Tutzing研讨会延续了高度整合会议的悠久传统,重点关注基础后生动物的生物学和进化。会议由Christian R. Voolstra(德国康斯坦茨大学)和Ulrich Technau(奥地利维也纳大学)组织,得到了德国研究基金会(DFG)的大力支持。在2023年成功举办的基础上,今年的研讨会汇集了来自欧洲、北美、亚洲和澳大利亚的近100名与会者,代表了从分子进化和功能基因组学到生态学、发育生物学和共生的最新研究和科学见解。中心主题“动物的恢复力和对环境变化的有机体反应:来自基础后生动物的见解”反映了利用刺胞动物(水螅动物、海葵、水母、珊瑚)、海绵和栉水母等早期分支动物来解决有关多细胞起源、组织再生机制和生物体适应环境变化过程的基本问题的持续努力。研讨会的结构包括专题会议、海报展示、圆桌讨论和邀请主题演讲。科学亮点包括新的基因组组装,单细胞转录组学的进展,表观遗传调控和转座因子活性的见解,以及关于神经系统进化,组织再生的生物力学和刺胞动物免疫反应的令人兴奋的发现。除了经验上的进步,会议还促进了跨学科的讨论,并为未来的合作研究概述了明确的优先事项。
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引用次数: 0
Photoperiodic regulation of Wnts in spermatogenesis of Brandt's vole (Lasiopodomys brandtii). 布氏田鼠(Lasiopodomys brandtii)精子发生中wnt的光周期调控。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2026-01-21 DOI: 10.1186/s12983-026-00596-4
Lijuan Zhao,Jiajia Shi,Yan Liu,Lewen Wang,Junping Zhao,Yuhua Shi,Hong Sun,Dawei Wang,Zhenlong Wang
Photoperiod regulates spermatogenesis in seasonal breeders, yet its molecular mechanisms remain unclear. The Wnt signaling pathway is critical for spermatogenesis in non-seasonal breeders, but its role in photoperiodic spermatogenesis in seasonal breeders is unexplored. To investigate this, we exposed male Brandt's voles (Lasiopodomys brandtii), a strict seasonal breeder, to long-photoperiod (LP, 16L:8D) and short-photoperiod (SP, 8L:16D) from the embryonic stage. Testis volume was markedly larger in LP than in SP from 4 to 10 weeks after birth. RNA-seq analysis of 151 Wnt pathway genes revealed differential expression, with Wnt5a, Wnt6, Wnt7a, and Wnt9a downregulated and Wnt7a upregulated in LP compared to SP. RT-qPCR and Western blotting confirmed these patterns. Immunofluorescence analysis showed that WNT7A and WNT9A were localized to pachytene and diplotene spermatocytes at 4 weeks and to elongating spermatid heads at 10 weeks. WNT6 and WNT5A appeared as perinuclear foci in early spermatocytes at 4 weeks, with WNT6 subsequently shifting to spermatid nuclei at 10 weeks. These findings indicate that prenatal and postnatal photoperiodic exposure, potentially mediated through both maternal and direct pathways, is associated with distinct spatiotemporal expression patterns of WNT5A, WNT6, WNT7A, and WNT9A, suggesting their potential involvement in seasonal reproduction.
光周期调节季节性育种者的精子发生,但其分子机制尚不清楚。Wnt信号通路对非季节性育种者的精子发生至关重要,但其在季节性育种者的光周期精子发生中的作用尚不清楚。为了研究这一问题,我们将雄性勃兰特田鼠(Lasiopodomys brandtii)从胚胎期开始暴露在长光周期(LP, 16L:8D)和短光周期(SP, 8L:16D)下。出生后4 ~ 10周,LP组睾丸体积明显大于SP组。对151个Wnt通路基因的RNA-seq分析显示,与SP相比,LP中Wnt5a、Wnt6、Wnt7a和Wnt9a表达下调,Wnt7a表达上调。RT-qPCR和Western blotting证实了这些模式。免疫荧光分析显示,WNT7A和WNT9A在4周时定位于粗线精母细胞和双plotene精母细胞,在10周时定位于伸长的精母细胞头。WNT6和WNT5A在4周时出现在早期精母细胞的核周灶中,WNT6随后在10周时转移到精母细胞核。这些发现表明,产前和产后光周期暴露可能通过母体和直接途径介导,与WNT5A、WNT6、WNT7A和WNT9A不同的时空表达模式有关,表明它们可能参与季节性繁殖。
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引用次数: 0
Urbanization and landscape effects on taxonomic and functional wild bee diversity in small towns and rural areas. 城市化和景观对小城镇和农村地区野生蜜蜂多样性分类和功能的影响。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-12-12 DOI: 10.1186/s12983-025-00594-y
Weronika Banaszak-Cibicka,Łukasz Dylewski,Joanna Bajon,Joanna T Białas,Monika Fliszkiewicz
BACKGROUNDPlanning and managing urban landscapes for greater biodiversity and creating effective conservation strategies requires understanding the relationships between biodiversity and different types of urbanization. Here, we described the variation between small-town and rural areas in two dimensions of biodiversity - taxonomic and functional. We compared community composition and alpha and beta diversity levels of bees between small town and rural sites. We also analyzed the impact of landscape composition on bee communities.RESULTSOur results showed that bee abundance, species richness, Shannon-Wiener diversity index, and functional alpha diversity parameters did not differ between small towns and rural areas. Taxonomical overall beta diversity also did not show significant differences between the areas studied. However, we found higher taxonomical turnover and lower taxonomical nestedness for bees in urban areas than in rural areas. Simultaneously, the functional overall beta diversity was higher in rural than urban areas. Moreover, the results showed negative relationships between bees' abundance and species richness with the density of impervious surface area (ISA) and cropland cover.CONCLUSIONSOur results show that even very small towns can influence bee communities, causing decrease in dissimilarity at the functional level, and landscape changes such as increased urbanization and crop cover have a significant negative impact on bees.
背景:规划和管理城市景观以增加生物多样性,并制定有效的保护策略,需要了解生物多样性与不同类型城市化之间的关系。本文从生物多样性的分类和功能两个维度描述了小城镇与农村之间的差异。我们比较了小城镇和农村地区蜜蜂的群落组成和α和β多样性水平。我们还分析了景观组成对蜜蜂群落的影响。结果城镇和农村地区的蜜蜂丰度、物种丰富度、Shannon-Wiener多样性指数和功能性α多样性参数均无显著差异。总体β多样性在不同地区间也无显著差异。然而,我们发现城市地区蜜蜂的分类周转比农村地区高,分类巢度比农村地区低。同时,农村地区的功能总体β多样性高于城市地区。蜜蜂的丰度和物种丰富度与不透水面积密度和农田覆被呈负相关。结论即使非常小的城镇也会对蜜蜂群落产生影响,导致功能层面的差异性降低,城市化和作物覆盖等景观变化对蜜蜂有显著的负面影响。
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引用次数: 0
Neurogenesis in the trunk and brain of the milkweed bug Oncopeltus fasciatus: insights beyond holometabolan models. 筋膜Oncopeltus fasciatus马利筋虫躯干和大脑中的神经发生:超越全代谢模型的见解。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-12-10 DOI: 10.1186/s12983-025-00593-z
Nitzan Alon,Ariel D Chipman
Current research on insect neurogenesis is focused on Holometabola, which undergo a derived developmental mode that includes metamorphosis, leading to a partial representation of the range of neurogenesis patterns in the embryonic insect nervous system. In this paper, we investigate neurogenesis in the hemimetabolous insect Oncopeltus fasciatus, focusing on both the trunk and brain regions. Our findings reveal early neuroblast formation in the brain, followed by a second phase in the whole embryo. Notably, we did not find gene expression patterns consistent with pro-neural clusters in Oncopeltus, and the brain exhibits characteristics that do not exist in the trunk. We also highlight similarities between segmentation and neurogenesis, proposing that spatial cues play a key role in this differentiation, as both the head and the thorax segment simultaneously. Our analysis suggests that brain development follows a separate trajectory from trunk neurogenesis in at least one neuroblast population that develops earlier than their counterparts. These findings diverge from the commonly presented view of insect neurogenesis and offer new insights into the ancestral roles of key genes involved in neural development.
目前对昆虫神经发生的研究主要集中在全代谢虫,它们经历了包括变态在内的衍生发育模式,导致了胚胎昆虫神经系统中神经发生模式的部分代表。在本文中,我们研究了半代谢昆虫筋膜Oncopeltus fasciatus的神经发生,重点研究了躯干和大脑区域。我们的发现揭示了大脑中早期神经母细胞的形成,随后是整个胚胎的第二阶段。值得注意的是,我们没有发现Oncopeltus中与前神经簇一致的基因表达模式,并且大脑表现出树干中不存在的特征。我们还强调了分割和神经发生之间的相似性,提出空间线索在这种分化中发挥关键作用,同时作为头部和胸腔段。我们的分析表明,至少在一个神经母细胞群体中,大脑发育遵循一个与主干神经发生不同的轨迹,比他们的同行发育得更早。这些发现不同于通常提出的昆虫神经发生的观点,并为涉及神经发育的关键基因的祖先作用提供了新的见解。
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引用次数: 0
Convergent subgenome dominance but with lineage-specific functional divergence of homoeologs during cave adaptation: insights from full-length transcriptomes of Sinocyclocheilus species. 洞穴适应过程中同源物的趋同亚基因组优势但具有谱系特异性的功能分化:来自中华环藻物种全长转录组的见解。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-11-27 DOI: 10.1186/s12983-025-00591-1
Shaohua Xu,Mingming Zhang,Fanwei Meng,Chongnv Wang,Xinxin Li,Baocheng Guo
Allopolyploidy creates duplicated genomes that drives evolutionary innovation and adaptive diversification under extreme environmental pressures. Although subgenomic architecture is recognized as pivotal in post-polyploid evolution, the mechanisms by which divergent subgenome dynamics shape adaptive potential remain unclear. We investigated how subgenome evolution relates to environmental adaptation in Sinocyclocheilus cavefish, an allotetraploid lineage that repeatedly colonized caves across the karst landscapes of Southwest China. We integrated full-length and short-read transcriptomes from a surface-dwelling species (S. angustiporus) and two independently cave-adapted species (S. microphthalmus and S. furcodorsalis). The two cave dweller species showed consistent B-subgenome dominance in homoeolog expression, whereas the surface species showed balanced expression. Functional enrichment analyses identified lineage-specific functional divergence of dominantly expressed homoeologs. In S. microphthalmus, subgenome-dominant genes were significantly enriched in immunological elements, suggesting an evolutionary shift in immune investment. In S. furcodorsalis, subgenome-dominant genes were significantly enriched in neuromodulatory and metabolic pathways, consistent with energy conservation and sensory regression in nutrient-poor caves. Together, these findings suggest that polyploidy can promote diversification through convergent subgenome dominance. Biased repurposing of distinct stress-responsive modules resolves ancestral genomic conflicts. This, in turn, drives the emergence of lineage-specific functions and links genome duplication to ecological adaptation.
异源多倍体产生重复的基因组,在极端的环境压力下驱动进化创新和适应性多样化。虽然亚基因组结构被认为是多倍体后进化的关键,但不同的亚基因组动力学形成适应潜力的机制尚不清楚。我们研究了Sinocyclocheilus洞穴鱼的亚基因组进化与环境适应的关系,Sinocyclocheilus洞穴鱼是一种异源四倍体谱系,在中国西南喀斯特景观中反复殖民洞穴。我们整合了一个地表生活物种(S. angustiporus)和两个独立的洞穴适应物种(S. microphthalmus和S. furcodorsalis)的全长和短读转录组。两个穴居种在同源表达上表现出一致的b亚基因组优势,而地表种在同源表达上表现出平衡。功能富集分析确定了优势表达同源基因的谱系特异性功能分化。在小眼盲蝽中,亚基因组优势基因在免疫元件中显著富集,提示免疫投资的进化转变。在洞穴中,亚基因组优势基因在神经调节和代谢途径中显著富集,与营养贫乏洞穴中的能量保存和感觉退化一致。总之,这些发现表明多倍体可以通过聚合亚基因组优势促进多样化。有偏见地重新利用不同的应激反应模块解决了祖先基因组的冲突。这反过来又推动了谱系特异性功能的出现,并将基因组复制与生态适应联系起来。
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引用次数: 0
Natural variability of trace-amine associated receptors in wild meerkats. 野生猫鼬微量胺相关受体的自然变异。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-11-27 DOI: 10.1186/s12983-025-00590-2
Johannes Fähnle,Kerstin Wilhelm,Benedikt Wiese,Marta Manser,Tim Clutton-Brock,Simone Sommer,Nadine Müller-Klein
BACKGROUNDThe study of olfaction as a sensory modality has been relatively neglected in comparison to other sensory cues, particularly in wildlife research. Furthermore, the genetic basis of olfaction remains poorly understood in non-model species. Recently, receptors belonging to trace amine-associated receptor (TAAR) family have been identified, and they exhibit considerable natural diversity and copy number variations across a range of species. As such, they represent a promising avenue for exploring olfactory processes, particularly in conjunction with more established olfactory receptors. In meerkats (Suricata suricatta), olfaction plays a significant role in foraging, social communication and predator defence. However, no prior research has investigated the genetics of meerkat olfaction. In this study, we leveraged the extensive longitudinal dataset from the Kalahari Meerkat Project, using samples from 398 individuals alive between 1996 and 2023, to develop a high-throughput sequencing approach for assessing TAAR diversity in wild meerkats.RESULTSA total of nine TAAR-loci were identified in meerkats, with both copy number variations and allelic polymorphisms observed for TAAR6 and TAAR8. Two distinct paralogues of TAAR6 and eleven distinct amino acid alleles across these paralogues were identified. Additionally, three paralogues of TAAR8, containing 14 distinct amino acid alleles, were discovered. Within each paralogue of both TAAR loci, a single allele is present in almost all individuals, while additional alleles show a markedly higher degree of variability in frequency. A similar pattern emerges in the relative abundance of TAAR alleles throughout the course of the study, which spanned more than 20 years. In line with the high prevalence of specific alleles and the considerable number of synonymous nucleotide exchanges, we found evidence for multiple sites under purifying selection in TAAR6 and TAAR8.CONCLUSIONThis is the first study to examine TAAR diversity in a cooperative breeder. Investigating the genetic basis of olfaction and inter-individual natural variation in TAAR diversity has the potential to expand the toolbox for integrative zoological research. Such insights could help elucidate the genetic underpinnings of behaviour, such as social communication, mate choice, and life-history strategies all in relation to TAAR diversity.
与其他感官线索相比,嗅觉作为一种感觉方式的研究相对被忽视,特别是在野生动物研究中。此外,嗅觉的遗传基础在非模式物种中仍然知之甚少。近年来,痕量胺相关受体(TAAR)家族的受体已被发现,它们在多种物种中表现出相当大的自然多样性和拷贝数差异。因此,它们代表了探索嗅觉过程的一个有前途的途径,特别是与更成熟的嗅觉受体结合。在狐獴(Suricata suricatta)中,嗅觉在觅食、社交和防御捕食者中起着重要作用。然而,之前没有研究调查猫鼬嗅觉的遗传学。在这项研究中,我们利用来自喀拉哈里猫鼬项目的广泛纵向数据集,使用1996年至2023年之间398个个体的样本,开发了一种高通量测序方法来评估野生猫鼬的TAAR多样性。结果在猫鼬中共鉴定出9个taar位点,TAAR6和TAAR8位点存在拷贝数变异和等位基因多态性。鉴定出TAAR6的两个不同的同源基因和11个不同的氨基酸等位基因。此外,还发现了TAAR8的3个同源基因,包含14个不同的氨基酸等位基因。在这两个TAAR基因座的每个平行序列中,几乎所有个体都存在单个等位基因,而其他等位基因在频率上表现出明显更高的变异性。在20多年的研究过程中,TAAR等位基因的相对丰度也出现了类似的模式。根据特异等位基因的高流行率和相当数量的同义核苷酸交换,我们在TAAR6和TAAR8中发现了多个位点处于纯化选择的证据。结论本研究首次对合作育种者TAAR多样性进行了研究。研究嗅觉的遗传基础和TAAR多样性的个体间自然变异有可能扩大综合动物学研究的工具箱。这些见解有助于阐明行为的遗传基础,如社会交流、配偶选择和生活史策略,这些都与TAAR多样性有关。
{"title":"Natural variability of trace-amine associated receptors in wild meerkats.","authors":"Johannes Fähnle,Kerstin Wilhelm,Benedikt Wiese,Marta Manser,Tim Clutton-Brock,Simone Sommer,Nadine Müller-Klein","doi":"10.1186/s12983-025-00590-2","DOIUrl":"https://doi.org/10.1186/s12983-025-00590-2","url":null,"abstract":"BACKGROUNDThe study of olfaction as a sensory modality has been relatively neglected in comparison to other sensory cues, particularly in wildlife research. Furthermore, the genetic basis of olfaction remains poorly understood in non-model species. Recently, receptors belonging to trace amine-associated receptor (TAAR) family have been identified, and they exhibit considerable natural diversity and copy number variations across a range of species. As such, they represent a promising avenue for exploring olfactory processes, particularly in conjunction with more established olfactory receptors. In meerkats (Suricata suricatta), olfaction plays a significant role in foraging, social communication and predator defence. However, no prior research has investigated the genetics of meerkat olfaction. In this study, we leveraged the extensive longitudinal dataset from the Kalahari Meerkat Project, using samples from 398 individuals alive between 1996 and 2023, to develop a high-throughput sequencing approach for assessing TAAR diversity in wild meerkats.RESULTSA total of nine TAAR-loci were identified in meerkats, with both copy number variations and allelic polymorphisms observed for TAAR6 and TAAR8. Two distinct paralogues of TAAR6 and eleven distinct amino acid alleles across these paralogues were identified. Additionally, three paralogues of TAAR8, containing 14 distinct amino acid alleles, were discovered. Within each paralogue of both TAAR loci, a single allele is present in almost all individuals, while additional alleles show a markedly higher degree of variability in frequency. A similar pattern emerges in the relative abundance of TAAR alleles throughout the course of the study, which spanned more than 20 years. In line with the high prevalence of specific alleles and the considerable number of synonymous nucleotide exchanges, we found evidence for multiple sites under purifying selection in TAAR6 and TAAR8.CONCLUSIONThis is the first study to examine TAAR diversity in a cooperative breeder. Investigating the genetic basis of olfaction and inter-individual natural variation in TAAR diversity has the potential to expand the toolbox for integrative zoological research. Such insights could help elucidate the genetic underpinnings of behaviour, such as social communication, mate choice, and life-history strategies all in relation to TAAR diversity.","PeriodicalId":55142,"journal":{"name":"Frontiers in Zoology","volume":"29 1","pages":"37"},"PeriodicalIF":2.8,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145613290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome resequencing reveals chromosomal fusion-driven early stages of XY chromosomes evolution in the darkbarbel catfish (Tachysurus vachellii) 全基因组重测序揭示了暗刺鲶鱼XY染色体早期进化阶段的染色体融合驱动
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-11-18 DOI: 10.1186/s12983-025-00588-w
Jianjun Liu, Min Tang, Guoqing Duan, Huan Wang, Siqi Liu, Liuwang Nie, Huaxing Zhou
This study investigates the early stages of putative sex chromosome evolution in the darkbarbel catfish (Tachysurus vachellii) through whole-genome resequencing of 31 individuals. We identified the sex-determining region (SDR) on chromosome 3 (chr3), with an FST value of 0.5, indicating the presence of relatively putative young XY sex chromosomes. Our analyses revealed significant genetic differentiation between male and female groups, suggesting that these young sex chromosomes contribute to observed genetic divergence. Notably, among SDR, pseudoautosomal region (PAR), and autosomes, PAR exhibits the highest synonymous substitutions (dS) values. And the significantly reduced ratio of nonsynonymous-to-synonymous substitutions (dN/dS) in SDR demonstrates intense purifying selection acting on this region, and the progressive dN/dS gradient (SDR < PAR < autosomes) reveals an incipient differentiation continuum from PAR to SDR. Our findings provide valuable insights into the dynamics of sex chromosome evolution in fish and underscore the need for further research to explore these mechanisms.
本研究通过31个个体的全基因组重测序,研究了暗刺鲶鱼(Tachysurus vachellii)性染色体进化的早期阶段。我们在3号染色体(chr3)上发现了性别决定区(SDR), FST值为0.5,表明存在相对假定的年轻XY性染色体。我们的分析揭示了男性和女性群体之间显著的遗传差异,表明这些年轻的性染色体有助于观察到的遗传差异。值得注意的是,在SDR、假常染色体区域(PAR)和常染色体中,PAR具有最高的同义替换(dS)值。SDR中非同义取代比(dN/dS)的显著降低表明该区域发生了强烈的净化选择,且dN/dS梯度的递进(SDR < PAR <常染色体)揭示了从PAR到SDR的分化连续体。我们的发现为鱼类性染色体进化的动力学提供了有价值的见解,并强调了进一步研究探索这些机制的必要性。
{"title":"Whole-genome resequencing reveals chromosomal fusion-driven early stages of XY chromosomes evolution in the darkbarbel catfish (Tachysurus vachellii)","authors":"Jianjun Liu, Min Tang, Guoqing Duan, Huan Wang, Siqi Liu, Liuwang Nie, Huaxing Zhou","doi":"10.1186/s12983-025-00588-w","DOIUrl":"https://doi.org/10.1186/s12983-025-00588-w","url":null,"abstract":"This study investigates the early stages of putative sex chromosome evolution in the darkbarbel catfish (Tachysurus vachellii) through whole-genome resequencing of 31 individuals. We identified the sex-determining region (SDR) on chromosome 3 (chr3), with an FST value of 0.5, indicating the presence of relatively putative young XY sex chromosomes. Our analyses revealed significant genetic differentiation between male and female groups, suggesting that these young sex chromosomes contribute to observed genetic divergence. Notably, among SDR, pseudoautosomal region (PAR), and autosomes, PAR exhibits the highest synonymous substitutions (dS) values. And the significantly reduced ratio of nonsynonymous-to-synonymous substitutions (dN/dS) in SDR demonstrates intense purifying selection acting on this region, and the progressive dN/dS gradient (SDR < PAR < autosomes) reveals an incipient differentiation continuum from PAR to SDR. Our findings provide valuable insights into the dynamics of sex chromosome evolution in fish and underscore the need for further research to explore these mechanisms.","PeriodicalId":55142,"journal":{"name":"Frontiers in Zoology","volume":"147 5 1","pages":""},"PeriodicalIF":2.8,"publicationDate":"2025-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145535433","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Frontiers in Zoology
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