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Sex differences in foraging ecology of a zooplanktivorous little auk Alle alle during the pre-laying period: insights from remote sensing and animal-tracking 产卵前期浮游动物Alle alle觅食生态的性别差异:遥感和动物追踪的启示
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-04-17 DOI: 10.1186/s12983-024-00534-2
Dariusz Jakubas, Katarzyna Wojczulanis-Jakubas, Lech Marek Iliszko
Energy and time allocation in seabirds differ between consecutive stages of breeding given various requirements of particular phases of the reproductive period. Theses allocations may also be sex-specific considering differential energetic or nutritional requirements of males and females and/or sexual segregation in foraging niches and/or areas. In this study we investigated the foraging ecology of an Arctic, zooplanktivorous seabird, the little auk Alle alle during the pre-laying period using remote sensing of the environment and GPS-TDR loggers deployed on birds. We compared foraging trips range and habitats of birds with other stages of the breeding period and between sexes. We found that little auks during the pre-laying period foraged exclusively in cold sea surface temperature zones (with temperatures < 5 ºC) but in various sea depth zones. They dived to similar depths ranging from -4.0 to -10.9 m, exploring various thermal microhabitats (with mean temperatures values ranging from 2.2 °C in Shelf sea depth zone to 5.9 °C in Deep sea depth zone). The majority of foraging trips and dives characteristics were similar to subsequent phases of breeding. However, home ranges during the pre-laying trips were wider compared to the incubation period. As expected, females exhibited wider foraging niches compared to males (wider range of sea surface temperature and sea depth in foraging locations), which could be explained by sex specific energetic and/or nutritional requirements (females producing an egg). We also delineated local foraging areas important for little auks during their whole breeding season. Protection of these areas is crucial for sustaining the local marine biodiversity. We found that little auks females during the pre-laying period explored wider foraging niches compared to males. These differences may be attributed to sex-specific nutritional or/and energetical constraints at this stage of breeding. The results of this study also emphasize the importance of shelf Arctic-type water masses as the foraging areas for little auks during successive stages of breeding.
由于繁殖期特定阶段的不同要求,海鸟在不同连续繁殖阶段的能量和时间分配也不同。考虑到雌性和雄性对能量或营养的不同需求和/或在觅食壁龛和/或区域的性别隔离,这些分配也可能具有性别特异性。在这项研究中,我们利用环境遥感和部署在鸟类身上的 GPS-TDR 记录仪,调查了北极地区的一种浮游动物海鸟--小赤麻鸭在产卵前期的觅食生态。我们比较了繁殖期其他阶段和不同性别鸟类的觅食行程范围和栖息地。我们发现,小白鹭在产卵前期只在寒冷的海面温度区(温度小于 5 ºC)觅食,但在不同的海深区觅食。它们潜入的深度从-4.0米到-10.9米不等,探索不同的热微生境(平均温度值从浅海深度区的2.2 °C到深海深度区的5.9 °C不等)。大多数觅食行程和潜水特征与随后的繁殖阶段相似。然而,与孵化期相比,产卵前期的觅食范围更广。正如所料,雌性的觅食范围比雄性更广(觅食地点的海面温度和海深范围更广),这可能与性别特有的能量和/或营养需求(雌性产卵)有关。我们还划定了小海鸥在整个繁殖季节的重要觅食区域。保护这些区域对维持当地海洋生物多样性至关重要。我们发现,在产卵前期,雌性小海鸥比雄性小海鸥的觅食范围更广。这些差异可能是由于在这一繁殖阶段,不同性别的营养或/和能量限制造成的。该研究结果还强调了北极陆架型水团作为小海鸥连续繁殖阶段觅食区的重要性。
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引用次数: 0
What frog gill resorption brings: loss of function, cell death, and metabolic reorganization 蛙鳃吸收带来了什么:功能丧失、细胞死亡和代谢重组
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-04-16 DOI: 10.1186/s12983-024-00532-4
Liming Chang, Wei Zhu, Jianping Jiang
Anuran metamorphosis, which is driven by thyroid hormone (TH)-mediated processes, orchestrates intricate morphological and functional transformations for the transition from aquatic tadpoles to terrestrial life, providing a valuable model for studying organ functionalization, remodeling, and regression. Larva-specific organ regression is one of the most striking phenomena observed during the anuran metamorphic climax. While previous studies extensively analyzed the regression mechanisms of the tail, the molecular processes governing gill resorption remain elusive. We employed Microhyla fissipes as a model, and utilized a comprehensive approach involving histological analysis, transmission electron microscopy, and transcriptomics to unravel gill development and resorption. The pro-metamorphic stages revealed highly developed gill structures, emphasizing their crucial role as the primary respiratory organ for tadpoles. The transcriptomic analysis highlighted the upregulation of genes associated with enhanced respiratory efficiency, such as hemoglobin and mucins. However, as metamorphosis progressed, gill filaments underwent shrinkage, decreases in blood vessel density, and structural changes that signified a decline in respiratory function. The molecular mechanisms driving gill resorption involved the TH pathway—in particular, the upregulation of thyroid hormone receptor (TR) β, genes associated with the tumor necrosis factor pathway and matrix metalloproteinases. Two distinct pathways orchestrate gill resorption, involving apoptosis directly induced by TH and cell death through the degradation of the extracellular matrix. In addition, metabolic reorganization during metamorphosis is a complex process, with tadpoles adapting their feeding behavior and mobilizing energy storage organs. The gills, which were previously overlooked, have been unveiled as potential energy storage organs that undergo metabolic reorganization. The transcriptomic analysis revealed dynamic changes in metabolism-related genes, indicating decreased protein synthesis and energy production and enhanced substrate transport and metabolism during metamorphic climax. This study sheds light on the structural, molecular, and metabolic dynamics during gill development and resorption in M. fissipes. The findings deepen our understanding of the intricate mechanisms governing organ regression and underscore the pivotal role of the gills in facilitating the transition from aquatic to terrestrial habitats.
有尾目动物的变态是由甲状腺激素(TH)介导的过程驱动的,它协调了从水生蝌蚪向陆生生命过渡的复杂形态和功能转变,为研究器官功能化、重塑和退化提供了一个宝贵的模型。幼体特异性器官退化是无尾类变质高潮期观察到的最显著现象之一。以往的研究广泛分析了尾部的退化机制,但鳃的吸收分子过程仍然难以捉摸。我们以尾蜥为模型,利用组织学分析、透射电子显微镜和转录组学等综合方法来揭示鳃的发育和吸收。原变态阶段显示了高度发达的鳃结构,强调了其作为蝌蚪主要呼吸器官的关键作用。转录组分析强调了与提高呼吸效率相关的基因(如血红蛋白和粘蛋白)的上调。然而,随着变态的进行,鳃丝发生了收缩、血管密度下降和结构变化,这标志着呼吸功能的下降。驱动鳃吸收的分子机制涉及甲状腺激素途径,特别是甲状腺激素受体(TR)β、肿瘤坏死因子途径相关基因和基质金属蛋白酶的上调。两种不同的途径协调了鳃的吸收,包括由 TH 直接诱导的细胞凋亡和通过细胞外基质降解造成的细胞死亡。此外,变态过程中的新陈代谢重组是一个复杂的过程,蝌蚪会调整其摄食行为并动员能量储存器官。以前被忽视的鳃被揭示为潜在的能量储存器官,会发生新陈代谢重组。转录组分析揭示了新陈代谢相关基因的动态变化,表明在变态高潮期蛋白质合成和能量生产减少,底物运输和新陈代谢增强。这项研究揭示了鱼腥鳃发育和吸收过程中的结构、分子和代谢动态。这些发现加深了我们对器官退化的复杂机制的理解,并强调了鳃在促进从水生栖息地向陆生栖息地过渡过程中的关键作用。
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引用次数: 0
Fine-grained image classification on bats using VGG16-CBAM: a practical example with 7 horseshoe bats taxa (CHIROPTERA: Rhinolophidae: Rhinolophus) from Southern China. 使用 VGG16-CBAM 对蝙蝠进行精细图像分类:以中国南方的 7 个马蹄蝠类群(CHIROPTERA: Rhinolophidae: Rhinolophus)为实例。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-04-01 DOI: 10.1186/s12983-024-00531-5
Zhong Cao, Kunhui Wang, Jiawei Wen, Chuxian Li, Yi Wu, Xiaoyun Wang, Wenhua Yu

Background: Rapid identification and classification of bats are critical for practical applications. However, species identification of bats is a typically detrimental and time-consuming manual task that depends on taxonomists and well-trained experts. Deep Convolutional Neural Networks (DCNNs) provide a practical approach for the extraction of the visual features and classification of objects, with potential application for bat classification.

Results: In this study, we investigated the capability of deep learning models to classify 7 horseshoe bat taxa (CHIROPTERA: Rhinolophus) from Southern China. We constructed an image dataset of 879 front, oblique, and lateral targeted facial images of live individuals collected during surveys between 2012 and 2021. All images were taken using a standard photograph protocol and setting aimed at enhancing the effectiveness of the DCNNs classification. The results demonstrated that our customized VGG16-CBAM model achieved up to 92.15% classification accuracy with better performance than other mainstream models. Furthermore, the Grad-CAM visualization reveals that the model pays more attention to the taxonomic key regions in the decision-making process, and these regions are often preferred by bat taxonomists for the classification of horseshoe bats, corroborating the validity of our methods.

Conclusion: Our finding will inspire further research on image-based automatic classification of chiropteran species for early detection and potential application in taxonomy.

背景:蝙蝠的快速识别和分类对实际应用至关重要。然而,蝙蝠的物种识别通常是一项有害且耗时的人工任务,需要依赖分类学家和训练有素的专家。深度卷积神经网络(DCNN)为提取视觉特征和物体分类提供了一种实用的方法,有望应用于蝙蝠分类:在这项研究中,我们研究了深度学习模型对中国南方 7 个马蹄蝠类群(CHIROPTERA: Rhinolophus)进行分类的能力。我们构建了一个图像数据集,其中包含 2012 年至 2021 年期间调查收集的 879 张活体个体的正面、斜面和侧面目标面部图像。所有图像均采用标准的拍摄方案和设置,旨在提高 DCNNs 分类的有效性。结果表明,我们定制的 VGG16-CBAM 模型的分类准确率高达 92.15%,性能优于其他主流模型。此外,Grad-CAM 可视化显示,该模型在决策过程中更关注分类学的关键区域,而这些区域通常是蝙蝠分类学家对马蹄蝠分类的首选区域,这证实了我们方法的有效性:我们的发现将激励人们进一步研究基于图像的濒危动物物种自动分类,以实现早期发现并在分类学中的潜在应用。
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引用次数: 0
Molecular analysis of scats revealed diet and prey choice of grey wolves and Eurasian lynx in the contact zone between the Dinaric Mountains and the Alps. 粪便的分子分析揭示了第纳尔山脉和阿尔卑斯山接触区灰狼和欧亚猞猁的饮食和猎物选择。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-03-19 DOI: 10.1186/s12983-024-00530-6
Elena Buzan, Hubert Potočnik, Boštjan Pokorny, Sandra Potušek, Laura Iacolina, Urška Gerič, Felicita Urzi, Ivan Kos

A comprehensive understanding of the dietary habits of carnivores is essential to get ecological insights into their role in the ecosystem, potential competition with other carnivorous species, and their effect on prey populations. Genetic analysis of non-invasive samples, such as scats, can supplement behavioural or microscopic diet investigations. The objective of this study was to employ DNA metabarcoding to accurately determine the prey species in grey wolf (Canis lupus) and Eurasian lynx (Lynx lynx) scat samples collected in the Julian Alps and the Dinaric Mountains, Slovenia. The primary prey of wolves were red deer (Cervus elaphus) (detected in 96% scat samples), European roe deer (Capreolus capreolus) (68%), and wild boar (Sus scrofa) (45%). A smaller portion of their diet consisted of mesocarnivores, small mammals, and domestic animals. In contrast, the lynx diet mostly consisted of European roe deer (82%) and red deer (64%). However, small mammals and domestic animals were also present in lynx diet, albeit to a lesser extent. Our findings indicate that the dietary habits of wolves and lynx are influenced by geographical location. Snapshot dietary analyses using metabarcoding are valuable for comprehending the behaviour and ecology of predators, and for devising conservation measures aimed at sustainable management of both their natural habitats and prey populations. However, to gain a more detailed understanding of wolf and lynx dietary habits and ecological impact, it would be essential to conduct long-term genetic monitoring of their diet.

要从生态学角度深入了解食肉动物在生态系统中的作用、与其他食肉物种的潜在竞争以及对猎物种群的影响,就必须全面了解食肉动物的饮食习惯。对粪便等非侵入性样本进行基因分析,可以补充行为或显微饮食调查。本研究的目的是利用 DNA 代谢编码准确确定在斯洛文尼亚朱利安阿尔卑斯山和迪纳拉山区采集的灰狼和欧亚猞猁粪便样本中的猎物种类。狼的主要猎物是红鹿(Cervus elaphus)(在 96% 的粪便样本中检测到)、欧洲狍(Capreolus capreolus)(68%)和野猪(Sus scrofa)(45%)。它们的食物中还有一小部分是中食肉动物、小型哺乳动物和家畜。相比之下,猞猁的食物主要是欧洲狍(82%)和红鹿(64%)。不过,猞猁的食物中也有小型哺乳动物和家畜,只是数量较少。我们的研究结果表明,狼和猞猁的饮食习惯受到地理位置的影响。利用代谢编码进行的饮食分析对于了解食肉动物的行为和生态,以及制定旨在对其自然栖息地和猎物种群进行可持续管理的保护措施非常有价值。然而,要想更详细地了解狼和猞猁的饮食习惯和对生态的影响,就必须对它们的饮食进行长期的遗传监测。
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引用次数: 0
Updated single cell reference atlas for the starlet anemone Nematostella vectensis 更新小海葵的单细胞参考图谱
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-03-18 DOI: 10.1186/s12983-024-00529-z
Alison G. Cole, Julia Steger, Julia Hagauer, Andreas Denner, Patricio Ferrer Murguia, Paul Knabl, Sanjay Narayanaswamy, Brittney Wick, Juan D. Montenegro, Ulrich Technau
The recent combination of genomics and single cell transcriptomics has allowed to assess a variety of non-conventional model organisms in much more depth. Single cell transcriptomes can uncover hidden cellular complexity and cell lineage relationships within organisms. The recent developmental cell atlases of the sea anemone Nematostella vectensis, a representative of the basally branching Cnidaria, has provided new insights into the development of all cell types (Steger et al Cell Rep 40(12):111370, 2022; Sebé-Pedrós et al. Cell 173(6):1520–1534.e20). However, the mapping of the single cell reads still suffers from relatively poor gene annotations and a draft genome consisting of many scaffolds. Here we present a new wildtype resource of the developmental single cell atlas, by re-mapping of sequence data first published in Steger et al. (2022) and Cole et al. (Nat Commun 14(1):1747, 2023), to the new chromosome-level genome assembly and corresponding gene models in Zimmermann et al. (Nat Commun 14, 8270 (2023). https://doi.org/10.1038/s41467-023-44080-7 ). We expand the pre-existing dataset through the incorporation of additional sequence data derived from the capture and sequencing of cell suspensions from four additional samples: 24 h gastrula, 2d planula, an inter-parietal region of the bodywall from a young unsexed animal, and another adult mesentery from a mature male animal. Our analyses of the full cell-state inventory provide transcriptomic signatures for 127 distinct cell states, of which 47 correspond to neuroglandular subtypes. We also identify two distinct putatively immune-related transcriptomic profiles that segregate between the inner and outer cell layers. Furthermore, the new gene annotation Nv2 has markedly improved the mapping on the single cell transcriptome data and will therefore be of great value for the community and anyone using the dataset.
最近,基因组学和单细胞转录组学的结合使我们能够更深入地评估各种非常规模式生物。单细胞转录组可以揭示生物体内隐藏的细胞复杂性和细胞系关系。海葵(Nematostella vectensis)是基底分支腔肠动物的代表,最近的海葵发育细胞图谱为所有细胞类型的发育提供了新的见解(Steger et al Cell Rep 40(12):111370, 2022; Sebé-Pedrós et al. Cell 173(6):1520-1534.e20)。然而,单细胞读数的图谱绘制仍然受到基因注释相对较差和由许多支架组成的基因组草案的影响。在此,我们将首次发表于 Steger 等人(2022 年)和 Cole 等人(Nat Commun 14(1):1747, 2023 年)的序列数据与 Zimmermann 等人(Nat Commun 14, 8270 (2023). https://doi.org/10.1038/s41467-023-44080-7 )的新染色体级基因组组装和相应基因模型进行重新映射,从而展示了发育单细胞图谱的新野生型资源。我们从另外四个样本的细胞悬浮液中采集并测序了额外的序列数据,从而扩展了已有的数据集:这四个样本分别是:24 小时的胃胚层、2d 刨层、来自幼年无性动物的体壁顶骨间区域以及来自成熟雄性动物的另一个成年肠系膜。我们对全部细胞状态清单的分析提供了 127 种不同细胞状态的转录组特征,其中 47 种对应于神经腺亚型。我们还发现了内层和外层细胞之间两个不同的、推测与免疫相关的转录组特征。此外,新的基因注释 Nv2 显著改善了单细胞转录组数据的映射,因此对社区和使用该数据集的任何人都具有重要价值。
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引用次数: 0
Obituary: Claus Nielsen 1938–2024 讣告:克劳斯-尼尔森 1938-2024
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-03-12 DOI: 10.1186/s12983-024-00528-0
Jürgen Heinze, Ulrich Technau
<p>Few scholars have left a deep and remaining influence on generations of zoologists. One of them is certainly Claus Nielsen, who recently passed away at the age of 85 years. Claus Nielsen was on the editorial board of Frontiers in Zoology, the journal of the German Zoological Society, for the last 20 years, since 2003. On behalf of the whole Editorial board and the publisher team, we would like to acknowledge the many years of commitment of Claus to our journal.</p><p>Claus was born in Copenhagen in 1938, and has for almost all his life studied and worked in Copenhagen. He obtained his Dr. Phil. in 1972 at the University of Copenhagen with a work on entoprocts, for which he became one of the world specialists. After several years of working as a lecturer and Associate Professor at the Zoological Museum in Copenhagen and the University of Copenhagen, he became Professor of Evolutionary Invertebrate Embryology in 2005. At the Zoological Museum, he served as a curator of entoprocts, ectoprocts, phoronids, brachiopods, pterobranchs, enteropneusts as well as later of urochordates and echinoderms.</p><p>Claus Nielsen had a world-wide recognition as an expert of marine invertebrates, with a strong interest in ciliary larvae, their evolutionary origin and relationships. Based on his thorough knowledge on all developmental forms of marine invertebrates, he was convinced that the common ancestor of Bilateria evolved from such ciliary larvae. His book “Animal Evolution: Interrelationships of the Living Phyla” published by Oxford University Press in 1995 was a guide and standard textbook for many evolutionary biologists and zoologists for several decades and remains influential up to this day. Claus received many honors, among them the prestigious Alexander Kovalevsky medal of the St. Petersburg Society of Naturalists (2001). In 2006 he became a foreign member of the Linnean Society of London and received the Linnean Medal for Zoology in 2015. He was an honorary member of the Society for Integrative and Comparative Biology and of the International Society for Invertebrate Morphology. He served in many academic committees and review panels. What is more, he was a fantastic, inspiring teacher in numerous field courses at marine stations, where his enthusiasm and witty charm has inspired and motivated generations of students. I also witnessed his tireless fascination and love for marine organisms, as well as his humor in practical courses taught to international Ph.D. students at the Marine station in Kristineberg, Sweden. His spirit, his scholarship and his friendly nature will be missed.</p><h3>Authors and Affiliations</h3><ol><li><p>LS Zoologie/Evolutionsbiologie, Universität Regensburg, Regensburg, Germany</p><p>Jürgen Heinze</p></li><li><p>Department for Neurosciences and Developmental Biology, Division of Molecular Evolution and Development, Research Platform Single Cell Regulation of Stem Cells, Faculty of Life Sciences, University of Vienna, Vienna, A
很少有学者能给一代又一代的动物学家留下深刻的影响。克劳斯-尼尔森(Claus Nielsen)无疑是其中之一,他最近刚刚去世,享年 85 岁。克劳斯-尼尔森自 2003 年起担任德国动物学会期刊《动物学前沿》(Frontiers in Zoology)的编委长达 20 年之久。克劳斯 1938 年出生于哥本哈根,几乎一生都在哥本哈根学习和工作。1972 年,他在哥本哈根大学获得了哲学博士学位,研究方向为内生菌,并成为该领域的世界级专家之一。在哥本哈根动物博物馆和哥本哈根大学担任讲师和副教授数年后,他于 2005 年成为无脊椎动物进化胚胎学教授。克劳斯-尼尔森是世界公认的海洋无脊椎动物专家,对睫状幼体、其进化起源和关系有着浓厚的兴趣。克劳斯-尼尔森是世界公认的海洋无脊椎动物专家,对纤毛幼虫、其进化起源和关系有着浓厚的兴趣。基于他对海洋无脊椎动物所有发育形式的透彻了解,他坚信双脊类的共同祖先就是由这种纤毛幼虫进化而来的。他的著作《动物进化论》(Animal Evolution:1995 年,牛津大学出版社出版了他的《动物进化论:生物门类的相互关系》一书,几十年来,这本书一直是许多进化生物学家和动物学家的指南和标准教科书,至今仍具有影响力。克劳斯获得过许多荣誉,其中包括著名的圣彼得堡博物学家协会亚历山大-科瓦列夫斯基奖章(2001 年)。2006 年,他成为伦敦林奈学会外籍会员,并于 2015 年获得林奈动物学奖章。他是综合比较生物学学会和国际无脊椎动物形态学学会的荣誉会员。他曾在许多学术委员会和评审小组任职。此外,他还是海洋站众多野外课程中一位出色的启发式教师,他的热情和诙谐魅力激励和鼓舞了一代又一代的学生。我还亲眼目睹了他对海洋生物孜孜不倦的痴迷和热爱,以及他在瑞典克里斯汀堡海洋站为国际博士生讲授实践课程时的幽默风趣。我们将永远怀念他的精神、他的学识和他的友善。作者和工作单位德国雷根斯堡雷根斯堡大学动物学/进化生物学系Jürgen Heinze生命科学院神经科学和发育生物学系,分子进化和发育部,干细胞单细胞调控研究平台、作者Jürgen Heinze查看作者发表的论文您也可以在PubMed Google Scholar中搜索该作者Ulrich Technau查看作者发表的论文您也可以在PubMed Google Scholar中搜索该作者通讯作者:Ulrich Technau。开放获取本文采用知识共享署名 4.0 国际许可协议进行许可,该协议允许以任何媒介或格式使用、共享、改编、分发和复制,只要您适当注明原作者和来源,提供知识共享许可协议的链接,并说明是否进行了修改。本文中的图片或其他第三方材料均包含在文章的知识共享许可协议中,除非在材料的署名栏中另有说明。如果材料未包含在文章的知识共享许可协议中,且您打算使用的材料不符合法律规定或超出许可使用范围,则您需要直接从版权所有者处获得许可。要查看该许可的副本,请访问 http://creativecommons.org/licenses/by/4.0/。除非在数据的信用行中另有说明,否则知识共享公共领域专用免责声明 (http://creativecommons.org/publicdomain/zero/1.0/) 适用于本文提供的数据。转载与许可引用本文Heinze, J., Technau, U. Obituary:Claus Nielsen 1938-2024.Front Zool 21, 7 (2024). https://doi.org/10.1186/s12983-024-00528-0Download citationPublished: 12 March 2024DOI: https://doi.org/10.1186/s12983-024-00528-0Share this articleAnyone you share the following link with will be able to read this content:Get shareable linkSorry, a shareable link is not currently available for this article.Copy to clipboard Provided by the Springer Nature SharedIt content-sharing initiative
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引用次数: 0
Rediscovering the unusual, solitary bryozoan Monobryozoon ambulans Remane, 1936: first molecular and new morphological data clarify its phylogenetic position 重新发现不寻常的单生贝类 Monobryozoon ambulans Remane, 1936:首次分子和新形态学数据澄清了其系统发育位置
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-03-05 DOI: 10.1186/s12983-024-00527-1
Thomas Schwaha, Sebastian H. Decker, Christian Baranyi, Ahmed J. Saadi
One of the most peculiar groups of the mostly colonial phylum Bryozoa is the taxon Monobryozoon, whose name already implies non-colonial members of the phylum. Its peculiarity and highly unusual lifestyle as a meiobenthic clade living on sand grains has fascinated many biologists. In particular its systematic relationship to other bryozoans remains a mystery. Despite numerous searches for M. ambulans in its type locality Helgoland, a locality with a long-lasting marine station and tradition of numerous courses and workshops, it has never been reencountered until today. Here we report the first observations of this almost mythical species, Monobryozoon ambulans. For the first time since 1938, we present new modern, morphological analyses of this species as well as the first ever molecular data. Our detailed morphological analysis confirms most previous descriptions, but also ascertains the presence of special ambulatory polymorphic zooids. We consider these as bud anlagen that ultimately consecutively separate from the animal rendering it pseudo-colonial. The remaining morphological data show strong ties to alcyonidioidean ctenostome bryozoans. Our morphological data is in accordance with the phylogenomic analysis, which clusters it with species of Alcyonidium as a sister group to multiporate ctenostomes. Divergence time estimation and ancestral state reconstruction recover the solitary state of M. ambulans as a derived character that probably evolved in the Late Cretaceous. In this study, we also provide the entire mitogenome of M. ambulans, which—despite the momentary lack of comparable data—provides important data of a unique and rare species for comparative aspects in the future. We were able to provide first sequence data and modern morphological data for the unique bryozoan, M. ambulans, which are both supporting an alcyonidioidean relationship within ctenostome bryozoans.
在大多为群居动物的环节动物门(Bryozoa)中,最奇特的类群之一是单栉水母类(Monobryozoon)。作为一个生活在沙粒上的小型底栖类群,它的奇特性和极不寻常的生活方式令许多生物学家着迷。特别是它与其他贝类的系统关系仍然是一个谜。尽管在其模式产地赫尔戈兰(Helgoland)进行了无数次搜寻,但直到今天,人们仍未再次遇见过这种生物。在此,我们报告了对这一几乎是神话般的物种--伏牛单栉水母(Monobryozoon ambulans)的首次观察结果。自 1938 年以来,我们首次对该物种进行了新的现代形态分析,并首次提供了分子数据。我们的详细形态分析证实了之前的大部分描述,同时也确定了特殊的伏地多态动物的存在。我们将这些动物视为芽状原体,它们最终会连续地与动物分离,使其成为假殖动物。其余的形态学数据表明,它与栉水母纲的栉水母类有密切联系。我们的形态学数据与系统发生组学分析结果一致,系统发生组学分析结果将其与栉水母类(Alcyonidium)聚类为多甲栉水母类的姊妹类群。通过对分化时间的估计和祖先状态的重建,我们发现伏龙鱼的单生状态是一种衍生特征,很可能是在晚白垩世演化而来的。在这项研究中,我们还提供了伏地龙的整个有丝分裂基因组,尽管目前还缺乏可比数据,但这为未来的比较研究提供了一个独特稀有物种的重要数据。我们首次提供了独特的伏龙贝的序列数据和现代形态学数据,这两个数据都支持了栉水母纲贝类中的栉水母纲关系。
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引用次数: 0
Correction: Support for a radiation of free-living flatworms in the African Great Lakes region and the description of five new Macrostomum species 更正:支持非洲大湖区自由生活扁形虫的辐射,并描述了五个新的巨型扁形虫物种
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-03-05 DOI: 10.1186/s12983-024-00526-2
Jeremias N. Brand
<p><b>Correction: Frontiers in Zoology (2023) 20:31</b> <b>https://doi.org/10.1186/s12983-023-00509-9</b></p><p>Following publication of the original article [1], the authors reported an error in the spelling of a species name.</p><p>Based on the taxonomic code of zoology (https://code.iczn.org/formation-and-treatment-of-names/article-32-original-spellings), the species name “Macrostomum schäreri” in the article should be corrected to “Macrostomum schareri”.</p><p>The original article [1] has been updated.</p><ol data-track-component="outbound reference"><li data-counter="1."><p>Brand JN. Support for a radiation of free-living flatworms in the African Great Lakes region and the description of five new <i>Macrostomum</i> species. Front Zool. 2023;20:31. https://doi.org/10.1186/s12983-023-00509-9.</p><p>Article PubMed PubMed Central Google Scholar </p></li></ol><p>Download references<svg aria-hidden="true" focusable="false" height="16" role="img" width="16"><use xlink:href="#icon-eds-i-download-medium" xmlns:xlink="http://www.w3.org/1999/xlink"></use></svg></p><h3>Authors and Affiliations</h3><ol><li><p>Department of Environmental Sciences, Zoological Institute, University of Basel, Vesalgasse 1, Basel, 4051, Switzerland</p><p>Jeremias N. Brand</p></li><li><p>Department of Tissue Dynamics and Regeneration, Max Planck Institute for Multidisciplinary Science, Am Fassberg 11, 37077, Göttingen, Germany</p><p>Jeremias N. Brand</p></li></ol><span>Authors</span><ol><li><span>Jeremias N. Brand</span>View author publications<p>You can also search for this author in <span>PubMed<span> </span>Google Scholar</span></p></li></ol><h3>Corresponding author</h3><p>Correspondence to Jeremias N. Brand.</p><h3>Publisher's Note</h3><p>Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p><p><b>Open Access</b> This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.</p><p>Reprints and permissions</p><img alt="Check for updates.
更正:Frontiers in Zoology (2023) 20:31 https://doi.org/10.1186/s12983-023-00509-9Following 原文[1]发表时,作者报告了一个物种名称的拼写错误。根据动物学分类代码(https://code.iczn.org/formation-and-treatment-of-names/article-32-original-spellings),文章中的物种名称 "Macrostomum schäreri "应更正为 "Macrostomum schareri"。原文[1]已更新。Brand JN.Support for a radiation of free-living flatworms in the African Great Lakes region and the description of five new Macrostomum species.Front Zool.2023;20:31. https://doi.org/10.1186/s12983-023-00509-9.Article PubMed PubMed Central Google Scholar 下载参考文献作者及工作单位巴塞尔大学动物研究所环境科学系,Vesalgasse 1, Basel, 4051, SwitzerlandJeremias N.BrandDepartment of Tissue Dynamics and Regeneration, Max Planck Institute for Multidisciplinary Science, Am Fassberg 11, 37077, Göttingen, GermanyJeremias N. BrandAuthorsJeremias N. BrandView author publications您也可以在PubMed Google Scholar中搜索该作者Corresponding authorCorrespondence to Jeremias N. Brand.出版者注释Jeremias N. Brand的著作权。开放获取 本文采用知识共享署名 4.0 国际许可协议进行许可,该协议允许以任何媒介或格式使用、共享、改编、分发和复制,只要您适当注明原作者和来源,提供知识共享许可协议的链接,并说明是否进行了修改。本文中的图片或其他第三方材料均包含在文章的知识共享许可协议中,除非在材料的署名栏中另有说明。如果材料未包含在文章的知识共享许可协议中,且您打算使用的材料不符合法律规定或超出许可使用范围,您需要直接从版权所有者处获得许可。要查看该许可的副本,请访问 http://creativecommons.org/licenses/by/4.0/。除非在数据的信用行中另有说明,否则知识共享公共领域专用免责声明 (http://creativecommons.org/publicdomain/zero/1.0/) 适用于本文提供的数据。转载与许可引用本文Brand, J.N. Correction:支持非洲大湖区自由生活扁形动物的辐射并描述了五个新的Macrostomum物种。Front Zool 21, 6 (2024). https://doi.org/10.1186/s12983-024-00526-2Download citationPublished: 05 March 2024DOI: https://doi.org/10.1186/s12983-024-00526-2Share this articleAnyone you share the following link with will be able to read this content:Get shareable linkSorry, a shareable link is not currently available for this article.Copy to clipboard Provided by the Springer Nature SharedIt content-sharing initiative
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引用次数: 0
Fat accumulation in striped hamsters (Cricetulus barabensis) reflects the temperature of prior cold acclimation 条纹仓鼠(Cricetulus barabensis)的脂肪积累反映了之前的冷适应温度
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-02-13 DOI: 10.1186/s12983-024-00523-5
Kaiyuan Zhang, Jing Cao, Zhijun Zhao
Proper adjustments of metabolic thermogenesis play an important role in thermoregulation in endotherm to cope with cold and/or warm ambient temperatures, however its roles in energy balance and fat accumulation remain uncertain. Our study aimed to investigate the effect of previous cold exposure (10 and 0 °C) on the energy budgets and fat accumulation in the striped hamsters (Cricetulus barabensis) in response to warm acclimation. The body mass, energy intake, resting metabolic rate (RMR) and nonshivering thermogenesis (NST), serum thyroid hormone levels (THs: T3 and T4), and the activity of brown adipose tissue (BAT), indicated by cytochrome c oxidase (COX) activity and uncoupling protein 1 (ucp1) expression, were measured following exposure to the cold (10 °C and 0 °C) and transition to the warm temperature (30 °C). The hamsters at 10 °C and 0 °C showed significant increases in energy intake, RMR and NST, and a considerable reduction in body fat than their counterparts kept at 21 °C. After being transferred from cold to warm temperature, the hamsters consumed less food, and decreased RMR and NST, but they significantly increased body fat content. Interestingly, the hamsters that were previously exposed to the colder temperature showed significantly more fat accumulation after transition to the warm. Serum T3 levels, BAT COX activity and ucp1 mRNA expression were significantly increased following cold exposure, and were considerably decreased after transition to the warm. Furthermore, body fat content was negatively correlated with serum T3 levels, BAT COX activity and UCP1 expression. The data suggest that the positive energy balance resulting from the decreased RMR and NST in BAT under the transition from the cold to the warm plays important roles in inducing fat accumulation. The extent of fat accumulation in the warm appears to reflect the temperature of the previous cold acclimation.
适当调整代谢产热在内热体温调节中发挥着重要作用,以应对寒冷和/或温暖的环境温度,但其在能量平衡和脂肪积累中的作用仍不确定。我们的研究旨在探讨先前的寒冷暴露(10 °C和0 °C)对条纹仓鼠(Cricetulus barabensis)能量平衡和脂肪积累的影响。在暴露于寒冷环境(10 °C和0 °C)并过渡到温暖环境(30 °C)后,测量了仓鼠的体重、能量摄入、静息代谢率(RMR)和非颤抖性产热(NST)、血清甲状腺激素水平(THs:T3和T4),以及棕色脂肪组织(BAT)的活性(通过细胞色素c氧化酶(COX)活性和解偶联蛋白1(ucp1)表达来表示)。与21 °C下的仓鼠相比,10 °C和0 °C下的仓鼠能量摄入、RMR和NST显著增加,体脂显著减少。从低温转到高温后,仓鼠的食物摄入量减少,RMR和NST下降,但体脂肪含量显著增加。有趣的是,之前暴露在较低温度下的仓鼠在转到温暖温度后脂肪积累明显增加。血清 T3 水平、BAT COX 活性和 ucp1 mRNA 表达在暴露于寒冷环境后显著增加,而在转入温暖环境后则大大减少。此外,体内脂肪含量与血清 T3 水平、BAT COX 活性和 UCP1 表达呈负相关。这些数据表明,在从寒冷环境过渡到温暖环境的过程中,BAT的RMR和NST降低所导致的正能量平衡在诱导脂肪积累方面发挥了重要作用。在温暖环境中脂肪积累的程度似乎反映了之前冷适应的温度。
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引用次数: 0
Differences in spatial niche of terrestrial mammals when facing extreme snowfall: the case in east Asian forests. 面对极端降雪时陆生哺乳动物空间生态位的差异:东亚森林的案例。
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2024-02-01 DOI: 10.1186/s12983-024-00522-6
Hiroto Enari, Haruka S Enari, Tatsuhito Sekiguchi, Motohisa Tanaka, Sohsuke Suzuki

Background: Recent climate changes have produced extreme climate events. This study focused on extreme snowfall and intended to discuss the vulnerability of temperate mammals against it through interspecies comparisons of spatial niches in northern Japan. We constructed niche models for seven non-hibernating species through wide-scaled snow tracking on skis, whose total survey length was 1144 km.

Results: We detected a low correlation (rs < 0.4) between most pairs of species niches, indicating that most species possessed different overwintering tactics. A morphological advantage in locomotion cost on snow did not always expand niche breadth. In contrast, a spatial niche could respond to (1) drastic landscape change by a diminishing understory due to snow, possibly leading to changes in predator-prey interactions, and (2) the mass of cold air, affecting thermoregulatory cost and food accessibility. When extraordinary snowfall occurred, the nonarboreal species with larger body sizes could niche shift, whereas the smaller-sized or semi-arboreal mammals did not. In addition, compared to omnivores, herbivores were prone to severe restriction of niche breadth due to a reduction in food accessibility under extreme climates.

Conclusions: Dietary habits and body size could determine the redundancy of niche width, which may govern robustness/vulnerability to extreme snowfall events.

背景:最近的气候变化产生了极端气候事件。本研究以极端降雪为重点,旨在通过日本北部物种间空间生态位的比较,探讨温带哺乳动物在极端降雪面前的脆弱性。我们通过使用滑雪板进行大范围雪地追踪,构建了七个非冬眠物种的生态位模型,调查总长度为 1144 公里:结果:我们发现大多数物种生态位之间的相关性较低(rs < 0.4),这表明大多数物种拥有不同的越冬策略。在雪地上运动成本的形态优势并不总能扩大生态位的宽度。与此相反,空间生态位可以对以下情况做出反应:(1)由于积雪导致林下植物减少,景观发生急剧变化,可能导致捕食者与被捕食者之间的相互作用发生变化;(2)大量冷空气影响体温调节成本和食物的可及性。当出现特大降雪时,体型较大的非旱生物种可以转移,而体型较小或半旱生哺乳动物则不能。此外,与杂食动物相比,食草动物在极端气候条件下由于食物可及性降低,其生态位广度容易受到严重限制:结论:饮食习惯和体型可决定生态位宽度的冗余度,这可能会影响对极端降雪事件的适应能力。
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引用次数: 0
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