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Size-dependent effects of the intestinal microbiota in juvenile Chinese alligators: implications for species protection 幼年扬子鳄肠道微生物群的大小依赖效应:物种保护的意义
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-29 DOI: 10.1186/s12983-025-00572-4
Wengang Li, Jingru Liu, Lulu Cui, Ke Sun, Yulin Gao, Qin Wang, Yongkang Zhou, Lan Mei, Pingsi Yi, XiaoBing Wu, ZhenPeng Yu, Tao Pan
Increasing the quality of offspring to optimize population reproductive efficiency represents a viable approach for increasing population size. The population of Chinese alligators has a growing age structure, but the high mortality rate of juveniles is a serious problem that needs to be solved. We investigated the relationship between the weight of juvenile Chinese alligators and the microbiota to improve the survival rate and provide better protection for Chinese alligators. The results revealed significant differences in body weight among the selected individuals. Among the 35 most abundant microbial genera in the different weight groups, four genera (Stenoxybacter, Gracilibacteria, Absconditabacteriales_(SR1) and Saccharimonadales) were significantly positively correlated with weight. These genera can help the host shape the anaerobic environment of the intestine, degrade organic acids and proteins, and promote the production of growth-promoting factors. This study provided valuable insights into the relationship between the microbiota and weight, along with theoretical guidance for improving the survival rate of juvenile Chinese alligators.
提高后代质量,优化种群繁殖效率,是扩大种群规模的可行途径。扬子鳄种群的年龄结构呈增长趋势,但幼鳄的高死亡率是一个亟待解决的严重问题。为了提高扬子鳄的成活率,更好地保护扬子鳄,我们研究了幼鳄体重与微生物群的关系。结果显示,被选个体的体重存在显著差异。在不同体重组35个最丰富的微生物属中,4个属(Stenoxybacter、Gracilibacteria、abconditabobacterales _(SR1)和Saccharimonadales)与体重呈显著正相关。这些属可以帮助宿主塑造肠道的厌氧环境,降解有机酸和蛋白质,促进生长促进因子的产生。本研究为进一步了解中华短吻鳄幼体的微生物群与体重之间的关系提供了有价值的见解,为提高中华短吻鳄幼体的存活率提供了理论指导。
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引用次数: 0
Correction: Zooid arrangement and colony growth in Porpita porpita 更正:动物的排列和蜂群的生长
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-14 DOI: 10.1186/s12983-025-00568-0
Kohei Oguchi, Akiteru Maeno, Keita Yoshida, Gaku Yamamoto, Hisanori Kohtsuka, Casey W. Dunn
<p><b>Correction: </b><b>Frontiers in Zoology (2025) 22:11</b> https://doi.org/10.1186/s12983-025-00565-3</p><br/><p>Following publication of the original article [1], author reported the captions to Figs. 5 and 6 were swapped. Captions have been revised to:</p><figure><figcaption><b data-test="figure-caption-text">Fig. 5</b></figcaption><picture><source srcset="//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig5_HTML.jpg?as=webp" type="image/webp"/><img alt="figure 5" aria-describedby="Fig5" height="896" loading="lazy" src="//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig5_HTML.jpg" width="685"/></picture><p>Several developmental stages of dactylozooids (<b>a, b, c</b>) and gonozooids (<b>d, e</b>). Immature dactylozooids in dactylozooids growth zone. Newly budding dactylozooids (nda: arrowheads) can be seen. Relatively developed dactylozooids have several projections at the distal side of zooids (<b>b, c</b>). Immature gonozooids at the epithelial of coenosarc (<b>d</b>). Relatively developed gonozooids have medusa buds at proximal side and small projections at distal side (<b>e</b>)</p><span>Full size image</span><svg aria-hidden="true" focusable="false" height="16" role="img" width="16"><use xlink:href="#icon-eds-i-chevron-right-small" xmlns:xlink="http://www.w3.org/1999/xlink"></use></svg></figure><figure><figcaption><b data-test="figure-caption-text">Fig. 6</b></figcaption><picture><source srcset="//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig6_HTML.jpg?as=webp" type="image/webp"/><img alt="figure 6" aria-describedby="Fig6" height="765" loading="lazy" src="//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig6_HTML.jpg" width="685"/></picture><p>Heteromorphic colonies observed in 2022 (<b>a, b</b>) and 2024 (<b>c, d, e, f</b>). These specimens include one colony that is completely split in half (<b>a</b>) as well as a colony that has presumably regenerated (<b>b, c, d</b>). Colonies with large curved margins were also observed (<b>e, f</b>)</p><span>Full size image</span><svg aria-hidden="true" focusable="false" height="16" role="img" width="16"><use xlink:href="#icon-eds-i-chevron-right-small" xmlns:xlink="http://www.w3.org/1999/xlink"></use></svg></figure><p>The original article [1] has been updated.</p><ol data-track-component="outbound reference" data-track-context="references section"><li data-counter="1."><p>Oguchi K, Maeno A, Yoshida K, et al. Zooid arrangement and colony growth <i>in Porpita porpita</i>. Front Zool. 2025;22:11. https://doi.org/10.1186/s12983-025-00565-3.</p><p>Article PubMed PubMed Central Google Scholar </p></li></ol><p>Download references<svg aria-hidden="true" focusable="false" height="16" role="img" width="16"><use xlink:href="#ic
更正:Frontiers in Zoology (2025) 22:11 https://doi.org/10.1186/s12983-025-00565-3Following原文章b[1]的发表,作者报告了图5和图6的标题被调换。说明文字已修改为:5趾形虫(a, b, c)和淋形虫(d, e)的几个发育阶段。指趾动物生长区内未成熟的指趾动物。可以看到刚出芽的指形动物(箭头)。相对发达的趾状类人猿在远端有几个突出物(b, c)。子囊上皮处未成熟的淋虫(d)。相对发达的淋形体近端有水母芽,远端有小突起(e)。6 2022年(a, b)和2024年(c, d, e, f)观察到异型菌落。这些标本包括一个完全分裂成两半的群体(a)以及一个可能已经再生的群体(b, c, d)。还观察到具有较大弯曲边缘的菌落(e, f)。王晓明,王晓明,王晓明,等。猪腹草的动物排列与菌落生长。前沿Zool. 2025;22:11。https://doi.org/10.1186/s12983-025-00565-3.Article PubMed PubMed Central谷歌学者下载参考资料作者和联系日本神奈川县三浦市东京大学misaki海洋生物站238‑0225日本kohei Oguchi &;东海大学生物科学本科学院生物系,日本北海道札幌,005 - 8601Keita YoshidaCell建筑实验室,国立遗传研究所,Yata 1111,静冈县三岛,411 - 8540,日本,akiteru maenenenshima水族馆,Katasekaigan,藤泽,神奈川县,251 - 0035,日本,yamamoto,耶鲁大学生态和进化生物学系,无脊椎动物学系馆长,惠特尼大道170号,皮博迪博物馆,纽黑文,06511,USACasey W. DunnAuthorsKohei OguchiView作者publationssearch author on:PubMed谷歌ScholarAkiteru MaenoView作者publationssearch author on:PubMed谷歌ScholarKeita YoshidaView作者publationssearch author on:PubMed谷歌ScholarGaku YamamotoView作者publationssearch author on:PubMed谷歌ScholarHisanori KohtsukaView作者publationssearch author on:PubMed谷歌ScholarCasey W. DunnView作者publationssearch author on:PubMed谷歌ScholarCorresponding作者与Kohei Oguchi通信出版商声明:对于已出版的地图和机构关系中的管辖权要求,普林格·自然保持中立。开放获取本文遵循知识共享署名4.0国际许可协议,该协议允许以任何媒介或格式使用、共享、改编、分发和复制,只要您适当地注明原作者和来源,提供知识共享许可协议的链接,并注明是否进行了更改。本文中的图像或其他第三方材料包含在文章的知识共享许可协议中,除非在材料的署名中另有说明。如果材料未包含在文章的知识共享许可中,并且您的预期用途不被法律法规允许或超过允许的用途,您将需要直接获得版权所有者的许可。要查看本许可的副本,请访问http://creativecommons.org/licenses/by/4.0/。知识共享公共领域免责条款(http://creativecommons.org/publicdomain/zero/1.0/)适用于本文中提供的数据,除非在数据的署名中另有说明。转载和许可引用本文oguchi, K., Maeno, A., Yoshida, K.等人。更正:动物的排列和蜂群的生长。前沿Zool 22,14(2025)。https://doi.org/10.1186/s12983-025-00568-0Download citationpublication: 14 July 2025DOI: https://doi.org/10.1186/s12983-025-00568-0Share这篇文章任何你分享以下链接的人都可以阅读到这篇文章:获取可共享链接对不起,这篇文章目前没有可共享的链接。复制到剪贴板由施普林格自然共享内容倡议提供
{"title":"Correction: Zooid arrangement and colony growth in Porpita porpita","authors":"Kohei Oguchi, Akiteru Maeno, Keita Yoshida, Gaku Yamamoto, Hisanori Kohtsuka, Casey W. Dunn","doi":"10.1186/s12983-025-00568-0","DOIUrl":"https://doi.org/10.1186/s12983-025-00568-0","url":null,"abstract":"&lt;p&gt;&lt;b&gt;Correction: &lt;/b&gt;&lt;b&gt;Frontiers in Zoology (2025) 22:11&lt;/b&gt; https://doi.org/10.1186/s12983-025-00565-3&lt;/p&gt;&lt;br/&gt;&lt;p&gt;Following publication of the original article [1], author reported the captions to Figs. 5 and 6 were swapped. Captions have been revised to:&lt;/p&gt;&lt;figure&gt;&lt;figcaption&gt;&lt;b data-test=\"figure-caption-text\"&gt;Fig. 5&lt;/b&gt;&lt;/figcaption&gt;&lt;picture&gt;&lt;source srcset=\"//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig5_HTML.jpg?as=webp\" type=\"image/webp\"/&gt;&lt;img alt=\"figure 5\" aria-describedby=\"Fig5\" height=\"896\" loading=\"lazy\" src=\"//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig5_HTML.jpg\" width=\"685\"/&gt;&lt;/picture&gt;&lt;p&gt;Several developmental stages of dactylozooids (&lt;b&gt;a, b, c&lt;/b&gt;) and gonozooids (&lt;b&gt;d, e&lt;/b&gt;). Immature dactylozooids in dactylozooids growth zone. Newly budding dactylozooids (nda: arrowheads) can be seen. Relatively developed dactylozooids have several projections at the distal side of zooids (&lt;b&gt;b, c&lt;/b&gt;). Immature gonozooids at the epithelial of coenosarc (&lt;b&gt;d&lt;/b&gt;). Relatively developed gonozooids have medusa buds at proximal side and small projections at distal side (&lt;b&gt;e&lt;/b&gt;)&lt;/p&gt;&lt;span&gt;Full size image&lt;/span&gt;&lt;svg aria-hidden=\"true\" focusable=\"false\" height=\"16\" role=\"img\" width=\"16\"&gt;&lt;use xlink:href=\"#icon-eds-i-chevron-right-small\" xmlns:xlink=\"http://www.w3.org/1999/xlink\"&gt;&lt;/use&gt;&lt;/svg&gt;&lt;/figure&gt;&lt;figure&gt;&lt;figcaption&gt;&lt;b data-test=\"figure-caption-text\"&gt;Fig. 6&lt;/b&gt;&lt;/figcaption&gt;&lt;picture&gt;&lt;source srcset=\"//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig6_HTML.jpg?as=webp\" type=\"image/webp\"/&gt;&lt;img alt=\"figure 6\" aria-describedby=\"Fig6\" height=\"765\" loading=\"lazy\" src=\"//media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12983-025-00568-0/MediaObjects/12983_2025_568_Fig6_HTML.jpg\" width=\"685\"/&gt;&lt;/picture&gt;&lt;p&gt;Heteromorphic colonies observed in 2022 (&lt;b&gt;a, b&lt;/b&gt;) and 2024 (&lt;b&gt;c, d, e, f&lt;/b&gt;). These specimens include one colony that is completely split in half (&lt;b&gt;a&lt;/b&gt;) as well as a colony that has presumably regenerated (&lt;b&gt;b, c, d&lt;/b&gt;). Colonies with large curved margins were also observed (&lt;b&gt;e, f&lt;/b&gt;)&lt;/p&gt;&lt;span&gt;Full size image&lt;/span&gt;&lt;svg aria-hidden=\"true\" focusable=\"false\" height=\"16\" role=\"img\" width=\"16\"&gt;&lt;use xlink:href=\"#icon-eds-i-chevron-right-small\" xmlns:xlink=\"http://www.w3.org/1999/xlink\"&gt;&lt;/use&gt;&lt;/svg&gt;&lt;/figure&gt;&lt;p&gt;The original article [1] has been updated.&lt;/p&gt;&lt;ol data-track-component=\"outbound reference\" data-track-context=\"references section\"&gt;&lt;li data-counter=\"1.\"&gt;&lt;p&gt;Oguchi K, Maeno A, Yoshida K, et al. Zooid arrangement and colony growth &lt;i&gt;in Porpita porpita&lt;/i&gt;. Front Zool. 2025;22:11. https://doi.org/10.1186/s12983-025-00565-3.&lt;/p&gt;&lt;p&gt;Article PubMed PubMed Central Google Scholar &lt;/p&gt;&lt;/li&gt;&lt;/ol&gt;&lt;p&gt;Download references&lt;svg aria-hidden=\"true\" focusable=\"false\" height=\"16\" role=\"img\" width=\"16\"&gt;&lt;use xlink:href=\"#ic","PeriodicalId":55142,"journal":{"name":"Frontiers in Zoology","volume":"109 1","pages":""},"PeriodicalIF":2.8,"publicationDate":"2025-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144622331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transferable approaches to CRISPR-Cas9 induced genome editing in non-model insects: a brief guide CRISPR-Cas9诱导非模式昆虫基因组编辑的可转移方法:简要指南
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-07 DOI: 10.1186/s12983-025-00566-2
Hassan M. M. Ahmed, Lisha Zheng, Vera S. Hunnekuhl
Despite the large variety of insect species with divergent morphological, developmental and physiological features questions on gene function could for a long time only be addressed in few model species. The adaption of the bacterial CRISPR-Cas system for genome editing in eukaryotic cells widened the scope of the field of functional genetics: for the first time the creation of heritable genetic changes had become possible in a very broad range of organisms. Since then, targeted genome editing using the CRISPR-Cas technology has greatly increased the possibilities for genetic manipulation in non-model insects where molecular genetic tools were little established. The technology allows for site-specific mutagenesis and germline transformation. Importantly, it can be used for the generation of gene knock-outs, and for the knock-in of transgenes and generation of gene-reporter fusions. CRISPR-Cas induced genome editing can thus be applied to address questions in basic research in various insect species and other study organisms. Notably, it can also be used in applied insect biotechnology to design new pest and vector control strategies such as gene drives and precision guided Sterile Insect Technique. However, establishing CRISPR in a new model requires several practical considerations that depend on the scientific questions and on the characteristics of the respective study organism. Therefore, this review is intended to give a literature overview on different CRISPR-Cas9 based methods that have already been established in diverse insects. After discussing some required pre-conditions of the study organism, we provide a guide through experimental considerations when planning to conduct CRISPR-Cas9 genome editing, such as the design and delivery of guide RNAs, and of Cas9 endonuclease. We discuss the use of different repair mechanisms including homology directed repair (HDR) for a defined insertion of genetic elements. Furthermore, we describe different molecular methods for genetic screening and the use of visible markers. We focus our review on experimental work in insects, but due to the ubiquitous functionality of the CRISPR-Cas system many considerations are transferable to other non-model organisms.
尽管昆虫种类繁多,形态、发育和生理特征各异,但基因功能的问题长期以来只能在少数模式物种中得到解决。细菌CRISPR-Cas系统适用于真核细胞的基因组编辑,扩大了功能遗传学领域的范围:第一次在非常广泛的生物体中创造可遗传的遗传变化成为可能。从那时起,使用CRISPR-Cas技术的靶向基因组编辑大大增加了在分子遗传工具很少建立的非模式昆虫中进行遗传操作的可能性。该技术允许位点特异性诱变和种系转化。重要的是,它可以用于基因敲除的产生,转基因的敲入和基因报告融合的产生。因此,CRISPR-Cas诱导的基因组编辑可以应用于解决各种昆虫物种和其他研究生物的基础研究中的问题。值得注意的是,它还可以用于应用昆虫生物技术,设计新的害虫和媒介控制策略,如基因驱动和精确引导昆虫不育技术。然而,在一个新的模型中建立CRISPR需要一些实际的考虑,这些考虑取决于科学问题和各自研究生物体的特征。因此,本综述旨在对已经在不同昆虫中建立的基于CRISPR-Cas9的不同方法进行文献综述。在讨论了研究生物所需的一些先决条件后,我们通过实验考虑提供了计划进行CRISPR-Cas9基因组编辑时的指导,例如引导rna的设计和递送,以及Cas9内切酶的设计和递送。我们讨论了使用不同的修复机制,包括同源定向修复(HDR)为一个确定的插入遗传元件。此外,我们描述了不同的分子方法的遗传筛选和使用的可见标记。我们的综述主要集中在昆虫的实验工作上,但由于CRISPR-Cas系统的普遍功能,许多考虑因素可转移到其他非模式生物。
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引用次数: 0
To eat or to care? Factors shaping parental or infanticidal behaviours in male poison frogs during territory takeover 吃还是关心?雄性毒蛙在领地占领过程中形成亲代或杀婴行为的因素
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-02 DOI: 10.1186/s12983-025-00567-1
Leïla Perroulaz, Lauriane Bégué, Eva Ringler
Parental care is costly for the caregiver. Therefore, parents should be able to discriminate between their own and conspecific offspring to avoid costly misdirected care. Infanticide, the intentional killing of conspecific young by adult individuals, occurs in many animal taxa. It has been shown to have several benefits for the perpetrator, such as increasing mating opportunities, ensuring dominance, or reducing a competitor’s fitness; but infanticide may also minimise risks of misdirected parental care. Previous studies in Allobates femoralis, a poison frog with parental care, have shown that males transport all tadpoles present in their territory to water bodies, regardless of whether they have sired the clutch or not. However, when taking over a new territory, males cannibalise clutches from the previous territory holder. These findings raise the question as to which factors actually shape parental care and infanticidal behaviour in male A. femoralis after territory takeover. To answer this question, we designed a laboratory experiment, in which we tested males with different territorial status and recent mating activity. We recorded tadpole transport and cannibalism and compared the occurrence of these two behaviours across our different experimental conditions. We found that territory ownership, relatedness to clutches, and possibly also recent mating activity influenced parental behaviours. However, we were unable to clearly disentangle the factors influencing cannibalistic behaviours. Our results also confirmed that males use territorial recognition to discriminate between their own and unrelated offspring, and that they commit infanticide likely to avoid misdirected parental care. Transport and cannibalism appear to be impacted by several factors in different ways. We found that the territorial status and relatedness to the clutch both influence parental behaviours in male poison frogs, whereas the factors influencing infanticidal behaviours remain unclear. Therefore, transport and cannibalism appear to be two independent processes, and factors influencing one behaviour do not necessarily affect the other. Further studies should investigate associated neuroendocrine changes, to better understand the mechanisms underlying parental and infanticidal behaviour in poison frogs. Our findings suggest that the decision-making processes involved in tadpole transport and clutch cannibalism appear to be more complex than previously thought.
亲代照顾对照顾者来说是昂贵的。因此,父母应该能够区分自己的后代和同种后代,以避免昂贵的误导照顾。杀婴,即成年个体故意杀死同种幼体,发生在许多动物类群中。研究表明,这对犯罪者有几个好处,比如增加交配机会,确保统治地位,或降低竞争对手的适合度;但杀婴行为也可能将父母照顾不当的风险降至最低。先前对一种由父母照顾的毒蛙Allobates femoralis的研究表明,雄性会将其领地内的所有蝌蚪运送到水体中,而不管它们是否产下了一窝。然而,当雄鸟占领一块新的领地时,它们会吃掉之前领地主人的后代。这些发现提出了一个问题,即在占领领地后,哪些因素实际上影响了雄性股雄性雄性的亲代照顾和杀婴行为。为了回答这个问题,我们设计了一个实验室实验,在这个实验中,我们测试了具有不同领土地位和最近交配活动的雄性。我们记录了蝌蚪运输和同类相食,并比较了这两种行为在不同实验条件下的发生情况。我们发现领地所有权,与窝的关系,可能还有最近的交配活动都会影响父母的行为。然而,我们无法清楚地理清影响同类相食行为的因素。我们的研究结果还证实,雄性利用领土识别来区分自己的后代和无关的后代,它们可能会为了避免错误的父母照顾而杀婴。交通和同类相食似乎受到几个不同因素的影响。研究发现,领地地位和对窝的亲缘关系都影响雄性毒蛙的亲代行为,而影响杀婴行为的因素尚不清楚。因此,运输和同类相食似乎是两个独立的过程,影响一种行为的因素不一定影响另一种行为。进一步的研究应该调查相关的神经内分泌变化,以更好地了解毒蛙双亲和杀婴行为的潜在机制。我们的研究结果表明,蝌蚪运输和离合器同类相食的决策过程似乎比以前认为的要复杂得多。
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引用次数: 0
Zooid arrangement and colony growth in Porpita porpita 猪腹草的动物排列与菌落生长
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-06-23 DOI: 10.1186/s12983-025-00565-3
Kohei Oguchi, Akiteru Maeno, Keita Yoshida, Gaku Yamamoto, Hisanori Kohtsuka, Casey W. Dunn
The blue button, Porpita porpita (Porpitidae), is a highly integrated colonial animal—i.e., a superorganism. It has multiple genetically identical bodies (zooids) that arise from the same embryo and are functionally specialized for distinct tasks and arranged in precise patterns. Their colonies include a float, coenosarc, gastrozooid (feeding polyp), gonozooids (reproductive polyps), and dactylozooids (tentacle polyp). Colonies are fragile and difficult to culture, leaving much about their development and lifecycle unknown. We provide new insight into colony development of P. porpita with morphological observation and histological analysis using histological sections and micro-CT technology. From 2019 to 2024, we collected over 267 P. porpita specimens of varying sizes to study colony development. Morphological investigation revealed that the number and length of gastrozooids, gonozooids and dactylozooids increased with float size. Further observation by histological section and micro-CT technique revealed the internal structures of colonies, including gastrozooid, floats, and aboral chambers that connect various zooids. Immature gonozooids and dactylozooids were observed near mature ones, providing insight into their colony level development. In addition, some colonies showed irregular shapes, but still contained at least one gastrozooid, illustrating the structural variation within the species. Our study revealed that gonozooids and dactylozooids increased in both number and size as the colony develops. Moreover, the growth zones for dactylozooids are located at the boundary of the mantle and coenosarc, and gonozooids emerge along the entire epithelium between the gastrozooid and dactylozooids. Colony growth generally follows a pattern proportional to colony circumference and area, and some colonies show irregular shapes, suggesting they have high regenerative capabilities. Taken together, these findings enhance our understanding of the ecology and life history of P. porpita.
蓝纽扣,Porpita Porpita (Porpitidae),是一种高度整合的殖民地动物。一个超级有机体。它有多个基因相同的身体(动物),这些身体来自同一个胚胎,它们的功能专门用于不同的任务,并以精确的模式排列。它们的菌落包括浮子、coenosarc、胃虫(摄食息肉)、gonozoids(生殖息肉)和dactylozoids(触手息肉)。殖民地是脆弱的,很难培养,留下了很多关于他们的发展和生命周期未知。利用组织切片和显微ct技术进行形态学观察和组织学分析,为porpita菌落发育提供新的认识。从2019年到2024年,我们收集了267个不同大小的porpita标本来研究群体的发育。形态学研究表明,腹虫、淋虫和趾虫的数量和长度随浮子大小的增加而增加。进一步的组织学切片观察和显微ct技术显示了菌落的内部结构,包括腹虫体、浮体和连接各种虫体的胎腔。未成熟的淋虫和趾形虫在成熟的附近被观察到,为了解它们的群体水平发育提供了线索。此外,一些菌落形状不规则,但仍含有至少一个腹类动物,说明了物种内部的结构差异。我们的研究表明,随着菌落的发展,淋虫和趾虫的数量和大小都在增加。此外,趾形动物的生长区域位于套膜和输卵管的边界,而淋形动物则沿着胃形动物和趾形动物之间的整个上皮生长。菌落的生长通常遵循与菌落周长和面积成正比的模式,有些菌落呈现不规则的形状,表明它们具有很高的再生能力。综上所述,这些发现增强了我们对porpita的生态学和生活史的理解。
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引用次数: 0
Restriction times on the rise: mechanistic modelling of activity time of grassland vipers (Vipera spp.) in the face of climate change 限制时间上升:气候变化下草地毒蛇活动时间的机制模拟
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-06-23 DOI: 10.1186/s12983-025-00564-4
Edvárd Mizsei, Tibor Sos, Attila Móré, Bálint Wenner, Gergő Rák, Konrad Mebert
Climate change threatens species adapted to cool alpine environments, particularly ectotherms like reptiles. Small-sized grassland specialist vipers inhabit such environments in Eurasia and are highly susceptible to overheating and dehydration as global temperature rises. This study modelled activity restriction times, defined as hours when environmental temperatures exceed the thermal tolerance (i.e. not available for essential activities) of the species, for 20 grassland viper taxa to assess climate change impacts. Under future conditions, hours of activity restriction are projected to increase by 21% by the SSP1-2.6 scenario, and by 52.1% by the SSP5-8.5 scenario. Elevation and latitude significantly influenced restriction time changes, with high-altitude and northern populations predicted to be most affected. The taxa Vipera graeca and Vipera ursinii moldavica are expected to experience the greatest increase in restriction times. Despite warmer conditions potentially increasing hours within preferred thermal ranges, vipers are unlikely to exploit lower-elevation habitats due to competition and ecological constraints. These findings emphasise the urgent need for conservation strategies, including habitat preservation and connectivity, to mitigate the adverse effects of climate change on grassland vipers, particularly the most vulnerable populations.
气候变化威胁着适应寒冷高山环境的物种,尤其是爬行动物等变温动物。小型草原毒蛇栖息在欧亚大陆这样的环境中,随着全球气温上升,它们极易受到过热和脱水的影响。本研究模拟了20个草地毒蛇类群的活动限制时间,即环境温度超过该物种的热耐受力(即无法进行基本活动)的时间,以评估气候变化的影响。在未来条件下,在SSP1-2.6情景下,活动限制小时数预计将增加21%,在SSP5-8.5情景下,预计将增加52.1%。海拔和纬度显著影响限制时间的变化,预计高海拔和北部人群受影响最大。预计在限制时间上,希腊毒蛇和乌尔西尼毒蛇的增幅最大。尽管更温暖的环境可能会增加在首选温度范围内的时间,但由于竞争和生态限制,毒蛇不太可能开发低海拔栖息地。这些发现强调了保护策略的迫切需要,包括栖息地保护和连通性,以减轻气候变化对草地毒蛇,特别是最脆弱种群的不利影响。
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引用次数: 0
The apple of discord: can spider cocoons be equipped with antimicrobial factors?—a systematic review 不和谐的苹果:蜘蛛茧能配备抗菌因子吗?-系统评价
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-05-28 DOI: 10.1186/s12983-025-00563-5
Mateusz Glenszczyk, Artur Lis, Weronika Porc, Magdalena Pacwa-Płociniczak, Agnieszka Babczyńska
The antimicrobial properties of spider silk have been a topic of scientific intrigue since ancient times. Despite extensive research, the question remains unresolved due to conflicting findings and methodological challenges. This work revisits and synthesizes current knowledge, proposing that spider cocoons, rather than other spider products, serve as a particularly promising focus for investigating antimicrobial factors. This emphasis arises from their critical role in parental investment and reproductive success, as the maternal care associated with spider egg sacs suggests the necessity for enhanced antimicrobial protection to safeguard offspring. By investigating existing research, we propose that the protective properties of spider egg sacs may derive not only from the silk itself, but also from the eggs contained within, as supported by previous hypotheses. Furthermore, drawing on the body of knowledge, we suggest that potential antimicrobial defense mechanisms may extend beyond intrinsic factors, encompassing interactions with microorganisms, plants, and other possible environmental elements that remain unexplored but may likely be interconnected. This review highlights that the potential interplay of these factors may be complex and possibly influenced by ecological and biological contexts. Unraveling these dynamics requires an interdisciplinary approach, incorporating diverse methodologies and perspectives to address the gaps in current knowledge. By refining the focus and embracing a broader conceptual framework, future research can provide definitive insights into the antimicrobial properties of spider cocoons. Resolving this long-standing question will not only clarify the scientific debate but also deepen our understanding of spider biology and the adaptive strategies that have evolved to ensure reproductive success.
自古以来,蜘蛛丝的抗菌性能一直是科学界的一个话题。尽管进行了广泛的研究,但由于相互矛盾的发现和方法上的挑战,这个问题仍未得到解决。这项工作回顾和综合了目前的知识,提出蜘蛛茧,而不是其他蜘蛛产品,作为研究抗菌因子的特别有前途的焦点。这种强调源于它们在亲代投资和繁殖成功中的关键作用,因为与蜘蛛卵囊相关的母性护理表明有必要加强抗菌保护以保护后代。通过对现有研究的调查,我们提出蜘蛛卵囊的保护特性可能不仅来自蛛丝本身,还来自其中的卵,这与之前的假设相一致。此外,根据现有的知识,我们认为潜在的抗菌防御机制可能超出内在因素,包括与微生物、植物和其他可能的环境因素的相互作用,这些因素尚未被探索,但可能相互关联。本综述强调,这些因素的潜在相互作用可能是复杂的,并可能受到生态和生物背景的影响。解开这些动态需要跨学科的方法,结合不同的方法和观点来解决当前知识的差距。通过细化重点和拥抱更广泛的概念框架,未来的研究可以为蜘蛛茧的抗菌特性提供明确的见解。解决这个长期存在的问题不仅将澄清科学争论,而且还将加深我们对蜘蛛生物学和适应策略的理解,这些策略已经进化到确保繁殖成功。
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引用次数: 0
Modeling habitat suitability and connectivity for the sole endemic genus of Italian vertebrate: present and future perspectives 意大利脊椎动物唯一特有属的生境适宜性和连通性建模:现在和未来的观点
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-05-26 DOI: 10.1186/s12983-025-00562-6
Davide Serva, Ilaria Bernabò, Viviana Cittadino, Antonio Romano, Francesco Cerasoli, Maurizio Biondi, Mattia Iannella
Amphibians are the most globally threatened vertebrates, facing a particularly high risk of extinction in some regions, such as the Mediterranean basin. Within this region, the genus Salamandrina, comprising two species of notable conservation concerns, managed to persist throughout historical climate changes exclusively along the Italian peninsula. Among the main threats to this genus are habitat loss and climate change, as this salamander is adapted to humid forests and relies heavily on water sources, such as small streams, for reproduction. In this study, we employed fine-scale species distribution models (SDMs) to estimate areas projected to remain suitable for Salamandrina species in the future and areas expected to become unsuitable, incorporating bioclimatic, topographic, and habitat variables. We also evaluated landscape connectivity and identified ecological corridors that could facilitate movement through circuit-theory techniques, analyzing potential changes under different scenarios. Additionally, considering known hybridization events in a contact zone between the two species, we measured connectivity to assess whether this process might change in the future. We found several suitable areas that mostly align with the known ranges of both species. Future projections showed an overall decline in habitat suitability, with a northwestern shift. While strong in certain areas, landscape connectivity is expected to decrease overall. Specifically, our results revealed several corridors for S. perspicillata (the northern species), with higher connectivity values in the Central Apennines. For S. terdigitata (the southern species), a crucial corridor in the Catena Costiera Massifs, in the western southernmost region of the Italian peninsula, connects two key conservation areas. In the contact zone, we identified corridors that could favor hybridization between the species, with predictions suggesting an increase. Our findings inform the long-term conservation of a unique salamander genus. Strengthening conservation measures on Salamandrina species in areas predicted to become unsuitable or in areas that could become suitable and serve as ecological corridors will be critical. Furthermore, future monitoring efforts should focus on the corridors identified in the contact zone to assess whether the hybridization process is ongoing and at what rate.
两栖动物是全球最受威胁的脊椎动物,在地中海盆地等一些地区面临着特别高的灭绝风险。在这个地区,Salamandrina属,包括两个值得关注的保护物种,成功地在意大利半岛的历史气候变化中持续存在。该属面临的主要威胁是栖息地丧失和气候变化,因为这种蝾螈适应潮湿的森林,严重依赖水源,如小溪,进行繁殖。在本研究中,我们采用精细尺度物种分布模型(SDMs),结合生物气候、地形和栖息地变量,预测了未来Salamandrina物种的适宜区和不适宜区。我们还评估了景观连通性,并通过环路理论技术确定了促进运动的生态走廊,分析了不同场景下的潜在变化。此外,考虑到两个物种之间接触区已知的杂交事件,我们测量了连通性,以评估这一过程是否会在未来发生变化。我们找到了几个适合的地区,这些地区与这两个物种的已知范围基本一致。未来的预测显示,栖息地适宜性总体下降,并向西北方向转移。虽然某些地区的景观连通性很强,但预计整体上将下降。具体而言,我们的研究结果显示,在亚平宁山脉中部,北方种的S. perspicillata有多条通道,具有较高的连通性值。对于S. terdigitata(南部物种)来说,在意大利半岛最南端的Catena Costiera山脉,一条重要的走廊连接着两个关键的保护区。在接触区,我们确定了有利于物种间杂交的走廊,预测表明这种走廊会增加。我们的发现为一种独特的蝾螈属的长期保护提供了信息。在预测不适合或可能适合作为生态走廊的地区加强对蝾螈的保护措施将是至关重要的。此外,今后的监测工作应侧重于在接触区确定的走廊,以评估杂交过程是否正在进行以及以何种速度进行。
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引用次数: 0
Establishing genome sequencing and assembly for non-model and emerging model organisms: a brief guide 为非模式生物和新兴模式生物建立基因组测序和组装系统:简要指南
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-04-17 DOI: 10.1186/s12983-025-00561-7
Tilman Schell, Carola Greve, Lars Podsiadlowski
Reference genome assemblies are the basis for comprehensive genomic analyses and comparisons. Due to declining sequencing costs and growing computational power, genome projects are now feasible in smaller labs. De novo genome sequencing for non-model or emerging model organisms requires knowledge about genome size and techniques for extracting high molecular weight DNA. Next to quality, the amount of DNA obtained from single individuals is crucial, especially, when dealing with small organisms. While long-read sequencing technologies are the methods of choice for creating high quality genome assemblies, pure short-read assemblies might bear most of the coding parts of a genome but are usually much more fragmented and do not well resolve repeat elements or structural variants. Several genome initiatives produce more and more non-model organism genomes and provide rules for standards in genome sequencing and assembly. However, sometimes the organism of choice is not part of such an initiative or does not meet its standards. Therefore, if the scientific question can be answered with a genome of low contiguity in intergenic parts, missing the high standards of chromosome scale assembly should not prevent publication. This review describes how to set up an animal genome sequencing project in the lab, how to estimate costs and resources, and how to deal with suboptimal conditions. Thus, we aim to suggest optimal strategies for genome sequencing that fulfil the needs according to specific research questions, e.g. “How are species related to each other based on whole genomes?” (phylogenomics), “How do genomes of populations within a species differ?” (population genomics), “Are differences between populations relevant for conservation?” (conservation genomics), “Which selection pressure is acting on certain genes?” (identification of genes under selection), “Did repeats expand or contract recently?” (repeat dynamics).
参考基因组组装是全面基因组分析和比较的基础。由于测序成本的下降和计算能力的提高,基因组计划现在在较小的实验室中是可行的。非模式生物或新兴模式生物的从头基因组测序需要基因组大小的知识和提取高分子量DNA的技术。除了质量之外,从单个个体中获得的DNA数量至关重要,尤其是在处理小型生物体时。虽然长读测序技术是创建高质量基因组组装的首选方法,但纯短读组装可能包含基因组的大部分编码部分,但通常更碎片化,不能很好地解决重复元件或结构变异。一些基因组计划产生了越来越多的非模式生物基因组,并为基因组测序和组装标准提供了规则。然而,有时选择的有机体不是这种倡议的一部分,或者不符合其标准。因此,如果科学问题可以用基因间部分低邻接性的基因组来回答,那么缺少染色体规模组装的高标准不应该妨碍发表。本文介绍了如何在实验室中建立一个动物基因组测序项目,如何估算成本和资源,以及如何处理次优条件。因此,我们的目标是提出基因组测序的最佳策略,以满足特定研究问题的需求,例如“基于全基因组,物种是如何相互关联的?”(系统基因组学),“一个物种内种群的基因组有何不同?”(种群基因组学),“种群之间的差异与保护有关吗?”(保护基因组学),“哪种选择压力作用于某些基因?”(选择下的基因鉴定),“重复序列最近是扩大还是缩小?”(重复动态)。
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引用次数: 0
Alternative mating tactics in brown widow spiders: mating with or without male self-sacrifice does not affect the copulatory mechanism 棕寡妇蜘蛛的另类交配策略:雄性自我牺牲与否并不影响交配机制
IF 2.8 2区 生物学 Q1 ZOOLOGY Pub Date : 2025-04-02 DOI: 10.1186/s12983-025-00560-8
Lenka Sentenská, Dante Poy, Maydianne C. B. Andrade, Gabriele B. Uhl
Male self-sacrifice during mating is one of the most extreme forms of male reproductive investment. In two species of widow spiders (genus Latrodectus), males trigger sexual cannibalism by “somersaulting” into the fangs of the female after copulatory coupling is achieved. In this position, sperm are transferred with the secondary sexual organs, the transformed pedipalps of the male, while the female starts feeding on his opisthosoma. In Latrodectus hasselti and L. geometricus, matings also occur with subadult females (i.e. females in their last moulting stage) but during these “immature” matings, males do not perform the somersault. Consequently, mating positions differ dramatically between matings with adult and subadult females. Here, we investigate the copulatory mechanism of adult and immature matings in the brown widow L. geometricus by shock-freezing copulating pairs and 3D X-ray microtomography. We hypothesize differences in the copulatory mechanism and depth of insertion of the sperm transfer structures between the two mating tactics. We found that the copulatory mechanism does not differ between adult and immature mating tactics and do not depend on whether a somersault occurs. Furthermore, the somersault does not improve intromission depth of the male sperm transfer organs into the female sperm storage organs. Our results suggest that the somersault has evolved solely due to the selective advantages of sexual cannibalism. The costs and benefits of both mating tactics need to be further explored using paternity studies in order to understand their relative adaptive value.
男性在交配过程中的自我牺牲是男性生殖投资的最极端形式之一。在两种寡妇蜘蛛(Latrodectus属)中,雄性在交配成功后通过“翻筋斗”进入雌性的尖牙,从而引发性同类相食。在这种姿势下,精子与第二性器官一起转移,即雄性的变形肢,而雌性则开始以雄性的蚓体为食。在哈塞绵蚊和几何绵蚊中,交配也发生在亚成年雌性(即处于蜕皮最后阶段的雌性),但在这些“未成熟”交配期间,雄性不进行翻筋斗。因此,在与成年和亚成年雌性交配时,交配位置差别很大。本文采用冲击冷冻交配对和三维x射线显微断层扫描技术,研究了褐寡妇L. geometricus成虫和未成虫的交配机制。我们假设两种交配策略在交配机制和精子转移结构的插入深度方面存在差异。我们发现交配机制在成年和未成熟的交配策略之间没有差异,也不取决于是否发生翻跟头。此外,翻跟头并不能提高雄性精子转移器官进入雌性精子储存器官的深度。我们的研究结果表明,翻跟头的进化完全是由于性同类相食的选择优势。这两种交配策略的成本和收益需要通过父系研究进一步探索,以了解它们的相对适应价值。
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