Serology tests for SARS-CoV-2 provide a paradigm for estimating the number of individuals who have had an infection in the past (including cases that are not detected by routine testing, which has varied over the course of the pandemic and between jurisdictions). Such estimation is challenging in cases for which we only have limited serological data and do not take into account the uncertainty of the serology test. In this work, we provide a joint Bayesian model to improve the estimation of the sero-prevalence (the proportion of the population with SARS-CoV-2 antibodies) through integrating multiple sources of data, priors on the sensitivity and specificity of the serological test, and an effective epidemiological dynamics model. We apply our model to the Greater Vancouver area, British Columbia, Canada, with data acquired during the pandemic from the end of January to May 2020. Our estimated sero-prevalence is consistent with previous literature but with a tighter credible interval.
{"title":"Estimation of SARS-CoV-2 antibody prevalence through serological uncertainty and daily incidence.","authors":"Liangliang Wang, Joosung Min, Renny Doig, Lloyd T Elliott, Caroline Colijn","doi":"10.1002/cjs.11722","DOIUrl":"https://doi.org/10.1002/cjs.11722","url":null,"abstract":"<p><p>Serology tests for SARS-CoV-2 provide a paradigm for estimating the number of individuals who have had an infection in the past (including cases that are not detected by routine testing, which has varied over the course of the pandemic and between jurisdictions). Such estimation is challenging in cases for which we only have limited serological data and do not take into account the uncertainty of the serology test. In this work, we provide a joint Bayesian model to improve the estimation of the sero-prevalence (the proportion of the population with SARS-CoV-2 antibodies) through integrating multiple sources of data, priors on the sensitivity and specificity of the serological test, and an effective epidemiological dynamics model. We apply our model to the Greater Vancouver area, British Columbia, Canada, with data acquired during the pandemic from the end of January to May 2020. Our estimated sero-prevalence is consistent with previous literature but with a tighter credible interval.</p>","PeriodicalId":55281,"journal":{"name":"Canadian Journal of Statistics-Revue Canadienne De Statistique","volume":"50 3","pages":"734-750"},"PeriodicalIF":0.6,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9538003/pdf/CJS-50-734.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33515720","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Issue Information","authors":"","doi":"10.1002/cjs.11628","DOIUrl":"https://doi.org/10.1002/cjs.11628","url":null,"abstract":"","PeriodicalId":55281,"journal":{"name":"Canadian Journal of Statistics-Revue Canadienne De Statistique","volume":" ","pages":""},"PeriodicalIF":0.6,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49050475","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Big data present new theoretical and computational challenges as well as tremendous opportunities in many fields. In health care research, we develop a novel divide-and-conquer (DAC) approach to deal with massive and right-censored data under the accelerated failure time model, where the sample size is extraordinarily large and the dimension of predictors is large but smaller than the sample size. Specifically, we construct a penalized loss function by approximating the weighted least squares loss function by combining estimation results without penalization from all subsets. The resulting adaptive LASSO penalized DAC estimator enjoys the oracle property. Simulation studies demonstrate that the proposed DAC procedure performs well and also reduces the computation time with satisfactory performance compared with estimation results using the full data. Our proposed DAC approach is applied to a massive dataset from the Chinese Longitudinal Healthy Longevity Survey.
{"title":"Divide and conquer for accelerated failure time model with massive time-to-event data","authors":"Wen Su, Guosheng Yin, Jing Zhang, Xingqiu Zhao","doi":"10.1002/cjs.11725","DOIUrl":"10.1002/cjs.11725","url":null,"abstract":"<p>Big data present new theoretical and computational challenges as well as tremendous opportunities in many fields. In health care research, we develop a novel divide-and-conquer (DAC) approach to deal with massive and right-censored data under the accelerated failure time model, where the sample size is extraordinarily large and the dimension of predictors is large but smaller than the sample size. Specifically, we construct a penalized loss function by approximating the weighted least squares loss function by combining estimation results without penalization from all subsets. The resulting adaptive LASSO penalized DAC estimator enjoys the oracle property. Simulation studies demonstrate that the proposed DAC procedure performs well and also reduces the computation time with satisfactory performance compared with estimation results using the full data. Our proposed DAC approach is applied to a massive dataset from the Chinese Longitudinal Healthy Longevity Survey.</p>","PeriodicalId":55281,"journal":{"name":"Canadian Journal of Statistics-Revue Canadienne De Statistique","volume":"51 2","pages":"400-419"},"PeriodicalIF":0.6,"publicationDate":"2022-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43988808","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}