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Refugia within refugium of Geranium yesoense varieties: a follow-up study using chloroplast genome sequencing data of specimens from Mt. Asama, Japan 日本浅间山天竺葵品种中的避难所:利用叶绿体基因组测序数据对日本浅间山天竺葵标本进行的后续研究
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2024-01-02 DOI: 10.1093/biolinnean/blad121
Seikan Kurata, Shota Sakaguchi, Osamu Kurashima, Risa Ogawa, Yoshihisa Suyama, Sachiko Nishida, Motomi Ito
Recent phylogeographical studies have revealed that refugia sometimes retain high levels of genetic heterogeneity due to multiple colonization events, a phenomenon defined as ‘refugia within refugium’. In previous research, we reported a complex genetic structure within the Geranium yesoense complex, an alpine plant found in an interglacial refugium at high elevation in Central Japan, probably resulting from multiple colonization and hybridization events. However, we were unable to evaluate instances of introgression due to limited sample size. In the present study, we performed additional chloroplast genome sequencing, along with Sanger sequencing of selected chloroplast DNA regions, to elucidate the phylogenetic relationships among the refugial populations. The chloroplast genome sequence of a sample from Mt. Asama (an important refugium) was nested within the northern lineage (i.e. var. yesoense and var. pseudopratense), and haplotypes from Mt. Asama and Mt. Ibuki were also grouped with those of the northern lineage. Although our previous study suggested hybridization events between northern and southern lineages (i.e. var. nipponicum) at Mt. Asama, haplotypes from the southern lineage were not detected at range margins. This suggests that directional introgression occurred in these regions. Overall, our results further support that genetic heterogeneity within these refugia was amplified by recolonization and hybridization during past climate oscillations.
最近的系统地理学研究表明,由于多次殖民事件,避难所有时会保留高度的遗传异质性,这种现象被定义为 "避难所中的避难所"。在之前的研究中,我们报告了在日本中部高海拔冰期避难所中发现的高山植物天竺葵(Geranium yesoense)复合体内部复杂的遗传结构,这可能是多次定殖和杂交事件造成的。然而,由于样本量有限,我们无法评估引种情况。在本研究中,我们进行了额外的叶绿体基因组测序,并对选定的叶绿体 DNA 区域进行了 Sanger 测序,以阐明避难种群之间的系统发育关系。来自浅间山(重要的避难所)的一个样本的叶绿体基因组序列被嵌套在北系(即变种 yesoense 和变种 pseudopratense)中,来自浅间山和伊吹山的单倍型也被归入北系。虽然我们之前的研究表明浅间山(即变种 nipponicum)发生了南北两系杂交事件,但在分布区边缘并未检测到南系的单倍型。这表明在这些地区发生了定向引种。总之,我们的研究结果进一步证明,在过去的气候震荡中,这些避难所内的遗传异质性因重新定殖和杂交而扩大。
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引用次数: 0
Genetic structure of southern populations of Hydrochoerus hydrochaeris (Rodentia: Caviidae) 啮齿目(Rodentia: Caviidae)水蜗牛南方种群的遗传结构
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-12-26 DOI: 10.1093/biolinnean/blad132
Matías González-Barboza, Nadia Bou, Soledad Byrne, Juan Ignacio Túnez, José Mauricio Barbanti Duarte, Mariana Cosse
The capybara (Hydrochoerus hydrochaeris) is a large semi-aquatic rodent with a broad distribution across South America. Although it is a relatively common and well-known species, there are few studies on its evolutionary history. Consequently, we decided to investigate the genetic diversity, population structure, and demographic history of capybaras, including new populations from its southern distribution range, by using a 226 bp fragment of the mitochondrial D-loop region. We found 16 haplotypes and populations, with moderate levels of haplotype and nucleotide diversity. In addition, the genetic structure analyses suggested high genetic divergence among populations, mainly among Pampean and Chacoan populations. We also found a consistent phylogeographical pattern with the distribution of main rivers. In agreement with palaeontological data, we propose two colonization pathways towards the south driven by main basins: Paraná–Paraguay and Uruguay–Atlantic.
水豚(Hydrochoerus hydrochaeris)是一种大型半水栖啮齿动物,广泛分布于南美洲。虽然水豚是一种相对常见且广为人知的物种,但有关其进化史的研究却很少。因此,我们决定利用线粒体 D 环区的 226 bp 片段来研究水豚的遗传多样性、种群结构和人口历史,包括其南部分布区的新种群。我们发现了 16 个单倍型和种群,单倍型和核苷酸的多样性处于中等水平。此外,遗传结构分析表明,不同种群之间,主要是潘潘种群和查科种群之间的遗传差异较大。我们还发现了与主要河流分布一致的系统地理学模式。与古生物学数据一致,我们提出了两条由主要流域驱动的向南殖民之路:巴拉那-巴拉圭和乌拉圭-大西洋。
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引用次数: 0
Pleistocene climatic oscillations influenced the emergence of geographically widespread and restricted genetic lineages in an Andean grasshopper species group 更新世气候振荡影响了安第斯蚱蜢物种群中地理分布广泛且受限的遗传系的出现
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-12-15 DOI: 10.1093/biolinnean/blad166
Noelia V Guzmán, Luciano M Gandini, Elio R Castillo, Florencia Fernandez Campón, Maria Marta Cigliano, Viviana A Confalonieri
The grasshopper Trimerotropis pallidipennis species complex is distributed across arid and semi-arid environments from North to South America, reaching high altitudes along the Andes Mountain range. Currently, there are four valid species of Trimerotropis in South America. However, some species were found to comprise several genetic lineages. Here, we describe the genetic structure, lineage diversification, and environmental requirements within the Trimerotropis species complex in South America based on sequences from the mitochondrial COI gene, 4048 single nucleotide polymorphisms, and ecological niche modelling. The analyses revealed the existence of at least five lineages: two with a restricted geographical distribution and three with a very wide one. The results provide evidence that glacial cycles promoted not only the presence of refuge areas but also the isolation of widely distributed lineages on the eastern and western sides of the southern Andes, potentially driving the emergence of the Trimerotropis sp. lineage, which can tolerate more temperate habitats. Our results provide evidence for the effects of Pleistocene climatic changes on the diversification history of a South American grasshopper species complex.
蚱蜢 Trimerotropis pallidipennis 种群分布在北美洲到南美洲的干旱和半干旱环境中,沿安第斯山脉可到达高海拔地区。目前,南美洲有四个有效的 Trimerotropis 物种。然而,一些物种被发现由多个遗传系组成。在此,我们根据线粒体 COI 基因序列、4048 个单核苷酸多态性和生态位模型,描述了南美洲 Trimerotropis 物种群的遗传结构、世系分化和环境要求。分析结果表明至少存在五个世系:两个世系的地理分布有限,三个世系的地理分布非常广泛。研究结果证明,冰川周期不仅促进了避难区的存在,而且还隔离了安第斯山脉南部东西两侧广泛分布的品系,这有可能是能够耐受更温和生境的 Trimerotropis sp.品系出现的原因。我们的研究结果为更新世气候变化对南美洲蚱蜢物种群多样化历史的影响提供了证据。
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引用次数: 0
Wax on the surface of Phragmites australis leaves provides enemy-free space for the aphid Hyalopterus pruni 芦苇叶子表面的蜡为蚜虫提供了无天敌的空间
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-29 DOI: 10.1093/biolinnean/blad135
Akira Yamawo, Hiromi Mukai
The waxy layer on leaf surfaces may restrict the range of arthropod species that can grip the leaf, thus affecting biological interactions. Here, we report that the wax on the leaf surface of Phragmites australis leaves provides enemy-free space for the aphid Hyalopterus pruni. In our experiment, aphids had higher survival rates on Ph. australis leaves than on Prunus mume leaves in the presence of ladybirds. In addition, removal of wax from the surface of Ph. australis leaves enabled ladybugs to grip the surface of Ph. australis leaves and decreased the survival rate of aphids. These results indicate that the leaf wax of Ph. australis provides enemy-free space for H. pruni by inhibiting ladybird adhesion.
叶子表面的蜡质层可能会限制节肢动物种类的范围,从而影响生物相互作用。本文报道芦苇叶片表面的蜡质为蚜虫提供了无天敌的空间。在我们的实验中,瓢虫存在时,蚜虫在南蚜叶上的存活率高于在梅李叶上的存活率。此外,去除南方南方的叶子表面的蜡质使瓢虫能够抓住南方南方的叶子表面,降低了蚜虫的存活率。这些结果表明,南瓢虫叶蜡通过抑制瓢虫粘附为pruni提供了无天敌的空间。
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引用次数: 0
Possible ‘silver-spoon’ effect on adult terrestrial jumping in the mangrove rivulus fish (Kryptolebias marmoratus) (Cyprinodontiformes: Rivulidae) 可能的“银勺”效应对红树林河鱼(Kryptolebias marmoratus)成鱼陆地跳跃的影响(鲤形目:河鱼科)
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-29 DOI: 10.1093/biolinnean/blad162
Joseph M Styga, Isobel G Brown, Margaret V McMullen
Survival in complex environments is dependent on whole-animal performance, a target of natural and sexual selection. Variation in whole-animal performance among mature individuals can become broadened by phenotypic plasticity driven by early life experiences. Thus, detailing the environmental factors that contribute to phenotypic plasticity, and the associated phenotypic responses governed by those environmental factors, is essential if we are to understand the evolution of whole-animal performance. Here, using isogenic lines established from the hermaphroditic mangrove rivulus fish (Kryptolebias marmoratus) housed in a ‘common garden’, we investigate the link between variation in adult terrestrial jumping performance and early life experience (i.e. egg density). First, we hypothesize that individuals from different isogenic lineages should vary in jumping performance independent of egg density, suggesting a strict genetic source of variation. Second, we hypothesize that phenotypic plasticity should also introduce variation in adult jumping performance. Specifically, we expect that hatchlings incubated at higher egg densities in early development should adopt better jumping performances as adults, because higher egg density might be a cue for greater intraspecific competition upon hatching.
在复杂环境中的生存依赖于整个动物的性能,这是自然选择和性选择的目标。由早期生活经历驱动的表型可塑性可以扩大成熟个体之间全动物性能的差异。因此,如果我们想要了解全动物生产性能的进化,那么详细了解影响表型可塑性的环境因素以及由这些环境因素控制的相关表型反应是必不可少的。在这里,我们利用在“普通花园”中饲养的雌雄同体红树林河流鱼(Kryptolebias marmoratus)建立的等基因系,研究了成年陆地跳跃性能的变化与早期生活经历(即卵密度)之间的联系。首先,我们假设来自不同等基因谱系的个体在跳跃表现上的差异与卵密度无关,这表明变异有严格的遗传来源。其次,我们假设表型可塑性也会导致成人跳跃表现的变化。具体来说,我们预计在早期发育中卵密度较高的雏鸟在成年后应该具有更好的跳跃性能,因为较高的卵密度可能预示着在孵化时更大的种内竞争。
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引用次数: 0
Parallel phenotypic plasticity and divergent ecological strategies in morphologically and molecularly similar sympatric sponge species 形态和分子相似的同域海绵物种的平行表型可塑性和不同的生态策略
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-25 DOI: 10.1093/biolinnean/blad156
Janie Wulff
How can phenotypic plasticity promote or impede adaptive change and diversification? Answering this key question can be experimentally intractable, but closely related clonal species allow a direct approach: experimentally provoking phenotypic plasticity to assess the adaptive significance of both plastic traits and species differences. Two common Caribbean sponge species, Aplysina fulva and A. cauliformis, are nearly indistinguishable molecularly, and share growth form, habitat, and geographical range. This raises questions about species boundaries, within-species variability, and mechanisms of speciation. To distinguish phenotypic plasticity from genetic variation, and learn how plasticity might influence adaptive—and divergent—evolution, I: (i) quantified morphological and ecological characters, (ii) revealed phenotypic plasticity by growing clonemates in different environments, and (iii) related plastic morphological features to ecological function. Characters included skeletal fibre density, biomechanical properties, vulnerability to parasites and predators, wound healing, transport pathways, propagation by fragments, population dynamics, and growth and survival in settings differing in food, sunlight, predators, and water motion. Transplanting both species to a different environment elicited parallel plasticity in the same traits. Combined comparative and experimental data reveal integrated suites of ecologically relevant characters that clearly distinguish these species and allow interpretation of adaptive significance of plastic characters that may underlie divergence.
表型可塑性如何促进或阻碍适应性变化和多样化?在实验上回答这个关键问题可能很难,但密切相关的克隆物种允许一种直接的方法:通过实验激发表型可塑性来评估可塑性性状和物种差异的适应意义。两种常见的加勒比海绵,Aplysina fulva和A. cauliformis,在分子上几乎无法区分,并且具有相同的生长形式、栖息地和地理范围。这就提出了关于物种边界、物种内变异和物种形成机制的问题。为了区分表型可塑性和遗传变异,并了解可塑性如何影响适应和分化进化,我们:(I)量化形态和生态特征,(ii)通过在不同环境中生长无性系揭示表型可塑性,以及(iii)将可塑性形态特征与生态功能联系起来。这些特征包括骨骼纤维密度、生物力学特性、对寄生虫和捕食者的脆弱性、伤口愈合、运输途径、碎片传播、种群动态以及在不同食物、阳光、捕食者和水流环境下的生长和存活。将这两个物种移植到不同的环境中,在相同的性状上产生了平行的可塑性。综合比较和实验数据揭示了生态相关特征的综合套件,这些特征清楚地区分了这些物种,并允许解释可能构成分化的可塑性特征的适应性意义。
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引用次数: 0
Fine-scale phylogeography of the Japanese Genji firefly 日本源氏萤火虫的精细系统地理学
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-22 DOI: 10.1093/biolinnean/blad161
Tomoya Suzuki, Naoki Hiraishi, Shin-ya Ohba
The Japanese Archipelago consists of four major islands and numerous small islands. The Goto Islands are located near Kyushu, a major island in the Japanese Archipelago. We have previously reported that the population of the Japanese Genji firefly, Nipponoluciola cruciata, inhabiting the Goto Islands displays a unique flashing pattern that is used for pre-mating communication between males and females, indicating the possibility of genetic isolation of the Goto Islands population from neighbouring N. cruciata populations. In this study, we aimed to elucidate the gene flow between the Goto Islands N. cruciata population and its neighbouring island populations by molecular phylogenetic analyses based on the mitochondrial DNA regions of cytochrome c oxidase subunit II and ND5, also coupled to genome-wide analysis of nuclear DNA single nucleotide polymorphisms. Our results suggested that the Goto Islands N. cruciata population is genetically isolated from other populations of this species. Nuclear DNA-based population analyses indicated gene flow between the populations inhabiting the Kyushu and Iki Islands, situated at a distance approximately equal to that between the Goto and Kyushu Islands. Therefore, the genetic isolation of the Goto Islands N. cruciata population is largely affected by flashing pattern behaviour, underlining an ongoing speciation process.
日本群岛由四个主要岛屿和许多小岛组成。后藤群岛位于九州附近,九州是日本群岛的一个主要岛屿。我们之前报道过,居住在后藤群岛的日本源氏萤火虫(Nipponoluciola cruciata)种群显示出一种独特的闪光模式,用于雄性和雌性之间的交配前交流,这表明后藤群岛种群可能与邻近的N. cruciata种群存在遗传隔离。本研究旨在通过细胞色素c氧化酶亚基II和ND5线粒体DNA区域的分子系统发育分析,以及核DNA单核苷酸多态性的全基因组分析,阐明后藤岛N. crucata种群与邻近岛屿种群之间的基因流动。结果表明,后藤岛十字花科植物种群与其他种群存在遗传隔离。基于核dna的种群分析表明,居住在九州岛和Iki岛的种群之间的基因流动,位于后藤岛和九州岛之间的距离大致相等。因此,后藤岛N. crucata种群的遗传隔离在很大程度上受到闪光模式行为的影响,强调了一个正在进行的物种形成过程。
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引用次数: 0
Mixed mating patterns in morphologically diverse bumblebee-pollinated Salvia species from China 中国不同大黄蜂传粉鼠尾草种的混合交配模式
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-21 DOI: 10.1093/biolinnean/blad164
Han-Wen Xiao, Yan-Bo Huang, Qing-Shan Liu, Regine Claßen-Bockhoff, Ru-Nan Tian, Yu-Kun Wei
Flowers of Salvia are characterized by a diversity of staminal lever types mediating pollen transfer. In the East Asian subgenus Glutinaria, species have been categorized based on their distinct flower and stamen morphologies. A hypothesized advantage of degraded-lever types suggests they may optimize pollinator foraging time, increase visitation rates, and potentially trigger autonomous self-pollination. However, this hypothesis remains untested. Here, Salvia castanea, S. miltiorrhiza, and S. liguliloba were selected as test species representing the three major flower and stamen types of the East Asian sages. We compared the species with regard to their inflorescence architecture, floral display, nectar reward, pollinator efficiency, and seed set. We found that S. liguliloba had a degraded-lever type that significantly reduced pollinator foraging time did not significantly increase pollination efficiency. These species have a mixed mating pattern with high seed set, no pollen- or pollinator limitation, and no inbreeding depression. We conclude that the diversity of floral traits is addressed to pollinators, whereas reproductive success emerges from a complex interplay of factors encompassing floral characteristics, pollination efficiency, plant life history, or/and other biotic and abiotic factors. For this reason, the link between floral morphological traits and mating systems should not overestimated.
鼠尾草花的特点是雄蕊杠杆类型的多样性介导花粉传递。在东亚的谷草亚属中,根据其独特的花和雄蕊形态进行了物种分类。退化杠杆类型的一个假设优势表明,它们可能优化传粉者的觅食时间,增加访问率,并可能触发自主自花授粉。然而,这一假设尚未得到验证。本研究以丹参、丹参和木犀草为试验种,分别代表东亚三种主要的花蕊类型。我们比较了这些物种的花序结构、花的展示、花蜜的回报、传粉者的效率和种子的结实率。研究发现,木叶橐吾属退化杠杆型,显著减少传粉者的觅食时间,但不显著提高传粉效率。这些物种具有高结实率的混合交配模式,没有花粉或传粉者的限制,没有近交抑制。我们的结论是,花性状的多样性是针对传粉者的,而生殖成功则是包括花特性、授粉效率、植物生活史或/和其他生物和非生物因素在内的复杂相互作用的结果。因此,不应过高估计花形态特征与交配系统之间的联系。
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引用次数: 0
Phylogeographical patterns are governed by geography in endemic polymorphic snail Indrella ampulla (Gastropoda: Ariophantidae) 地方性多形蜗牛inrella ampulla的系统地理格局受地理因素的支配。
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-21 DOI: 10.1093/biolinnean/blad148
Sudeshna Chakraborthy, Maitreya Sil, Abhisikta Roy, H N Poorna Bhat, Anwesha Saha, Surya Narayanan, Chinta Sidharthan, N A Aravind
Genetic diversity within a species can be shaped by abiotic factors, such as climate and geography. We aimed to ascertain the relative importance of these two abiotic factors to Indrella ampulla, a monotypic snail species from the Western Ghats, India, that has three colour morphs with some overlapping distributions. We also wanted to investigate whether these colour morphs represent divergent lineages or incipient species. We sequenced one nuclear and two mitochondrial genes from 32 individuals of I. ampulla. We used phylogenetic, population genetic, and niche modelling tools to address these questions. The results suggested that the colour morphs were not reciprocally monophyletic and exhibited considerable niche overlap, suggesting that they cannot be considered as incipient species. Furthermore, the results showed that the impact of palaeoclimatic oscillations in shaping the genetic diversity of this species cannot be determined conclusively. The Palghat Gap seems to have shaped the genetic diversity in this group to a certain degree. The colour morph distributed south of the Palghat Gap did not show admixture and exhibited the least amount of niche overlap with the other morphs. The geography of the landscape seems to have played a prominent role in shaping genetic diversity in this species.
一个物种内部的遗传多样性可以由气候和地理等非生物因素塑造。我们的目的是确定这两个非生物因素对inrella ampulla的相对重要性,inrella ampulla是一种来自印度西高止山脉的单型蜗牛,有三种颜色变化,有一些重叠分布。我们还想研究这些颜色变化是否代表不同的谱系或早期物种。对32只壶腹水蚤的1个核基因和2个线粒体基因进行了测序。我们使用系统发育、种群遗传和生态位建模工具来解决这些问题。结果表明,颜色形态不是相互的单系,并表现出相当大的生态位重叠,表明它们不能被认为是早期物种。此外,研究结果还表明,古气候振荡对该物种遗传多样性的影响还不能确定。在某种程度上,帕尔伽特峡谷似乎塑造了这一群体的遗传多样性。分布在Palghat Gap南部的颜色形态没有混合,与其他形态的生态位重叠最少。景观的地理位置似乎在塑造该物种的遗传多样性方面发挥了突出作用。
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引用次数: 0
Seasonality predicts variation in life history phenotypes in the livebearing fish Priapichthys annectens 季节性预测了生育鱼颈鳞鱼生活史表型的变化
IF 1.9 3区 生物学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2023-11-18 DOI: 10.1093/biolinnean/blad119
Erik S Johnson, Michael Tobler, Jerald B Johnson
Livebearing fishes (Poeciliidae) have been used as models to test several aspects of life history theory. Previous work in these fishes showed that traits such as age and size at maturity, reproductive allocation, and number and size of offspring can each be shaped by natural selection. Life history traits can also be influenced by the environment, and in some cases, such phenotypic plasticity can also be adaptive. Resource availability in the environment can affect life history trait expression with increased resources expected to result in increased investment in reproduction. Here, we test this hypothesis in the Costa Rican livebearing fish Priapichthys annectens by quantifying life history traits and comparing trait values between populations collected during the dry season versus the wet season, periods when resource availability varies. We found that life history traits related to reproductive investment, but not the timing of reproductive events, differed between seasons. During the wet season, female body condition increased, and females invested less in reproduction, having fewer but larger offspring. Irrespective of the season, larger females gave birth to larger offspring. Finally, we found that this species utilizes a lecithotrophic strategy of provisioning eggs with nutrients being deposited in the ova prior to fertilization, and that females only carry one developing brood at a time (no superfetation). This is the first study documenting the life history of P. annectens, and it adds to a growing body of work suggesting that seasonal environmental differences can induce changes in the expression of some—but not all—life history traits.
有生命的鱼类(水蛭科)被用来作为模型来检验生命史理论的几个方面。先前对这些鱼类的研究表明,成熟时的年龄和大小、生殖分配、后代的数量和大小等特征都可以通过自然选择来塑造。生命史特征也可以受到环境的影响,在某些情况下,这种表型可塑性也可以是适应性的。环境中的资源可用性可以影响生活史性状表达,资源的增加预期会导致繁殖投资的增加。在这里,我们通过量化生活史特征并比较干季和湿季(资源可用性变化的时期)收集的种群之间的特征值,在哥斯达黎加的活产鱼Priapichthys annectens中验证了这一假设。我们发现,与生殖投资相关的生活史特征,而不是生殖事件的时间,在季节之间存在差异。在雨季,雌性身体状况增加,雌性对繁殖的投入减少,后代数量少但体积大。不论季节如何,体型较大的雌性会生出体型较大的后代。最后,我们发现该物种利用一种卵磷脂营养策略,在受精前为卵子提供沉积在卵子中的营养物质,并且雌性一次只携带一个正在发育的幼崽(没有迭卵)。这是第一个记录了P. annectens生活史的研究,并且它增加了越来越多的工作,表明季节性环境差异可以诱导某些(但不是全部)生活史特征的表达变化。
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引用次数: 0
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