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Usnic acid brief exposure suppresses cariogenic properties and complexity of Streptococcus mutans biofilms.
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-30 eCollection Date: 2024-12-01 DOI: 10.1016/j.bioflm.2024.100241
Santosh Pandit, Mi-A Kim, Ji-Eun Jung, Hyeon-Mi Choi, Jae-Gyu Jeon

Bacterial biofilms are highly structured surface associated architecture of micro-colonies, which are strongly bonded with the exopolymeric matrix of their own synthesis. These exopolymeric substances, mainly exopolysaccharides (EPS) initially assist the bacterial adhesion and finally form a bridge over the microcolonies to protect them from environmental assaults and antimicrobial exposure. Bacterial cells in dental biofilm metabolize dietary carbohydrates and produce organic acids. The blanket of exopolysaccharides over the bacterial communities hinders the buffering by saliva, contributing to the initiation of tooth decay followed by the progression of dental caries. Considering the current interest towards the use of natural antimicrobial agents to disarm the cariogenic properties of dental biofilm, this study evaluated the antimicrobial activity and the effect of twice daily brief exposure (1 min) of usnic acid on acid production, acid tolerance and development of 3-dimensional architecture of Streptococcus mutans biofilm. Herein, biofilms were briefly treated twice daily during biofilm development and biofilms were analyzed by using biochemical, microbiological and microscopic examination. Results obtained in this study showed a significant reduction in virulence properties of biofilm cells treated with usnic acid in compared to non-treated biofilms. Furthermore, twice daily brief exposure of usnic acid significantly disrupted the acid production and reduced the complexity of Streptococcus mutans biofilm by disrupting the EPS production. Brief exposure of usnic acid inhibited the production of glucosyltransferase (GTF) enzymes and their enzymatic activity leading to inhibition in production of EPS on the biofilm matrix. In conclusion, usnic acid treatment reduced the cariogenic properties and complexity of S. mutans biofilm by inhibiting acid production, acid tolerance and disrupting extracellular polysaccharide (EPS) formation, indicating its potential for preventing dental caries.

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引用次数: 0
Bridging the Gap: Biofilm-mediated establishment of Bacillus velezensis on Trichoderma guizhouense mycelia 弥合差距:生物膜介导的韦氏芽孢杆菌在贵州毛霉菌丝体上的建立
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-16 DOI: 10.1016/j.bioflm.2024.100239
Jiyu Xie , Xinli Sun , Yanwei Xia , Lili Tao , Taimeng Tan , Nan Zhang , Weibing Xun , Ruifu Zhang , Ákos T. Kovács , Zhihui Xu , Qirong Shen
Bacterial-fungal interactions (BFIs) are important in ecosystem dynamics, especially within the soil rhizosphere. The bacterium Bacillus velezensis SQR9 and the fungus Trichoderma guizhouense NJAU 4742 have gathered considerable attention due to their roles in promoting plant growth and protecting their host against pathogens. In this study, we utilized these two model microorganisms to investigate BFIs. We firstly demonstrate that while co-inoculation of B. velezensis and T. guizhouense could promote tomato growth, these two microorganisms display mutual antagonism on agar solidified medium. To resolve this contradiction, we developed an inoculation method, that allows B. velezensis colonization of T. guizhouense hyphae and performed a transcriptome analysis. During colonization of the fungal hyphae, B. velezensis SQR9 upregulates expression of biofilm related genes (e.g. eps, tasA, and bslA) that is distinct from free-living cells. This result suggested an intricate association between extracellular matrix expression and hyphae colonization. In accordance, deletion epsD, tasA, or both epsD and tasA genes of B. velezensis diminished colonization of the T. guizhouense hyphae. The insights from our study demonstrate that soil BFIs are more complex than we understood, potentially involving both competition and cooperation. These intricate biofilm-mediated BFI dynamics might contribute to the remarkable diversity observed within soil microbiota, providing a fresh perspective for further exploration of BFIs in the plant rhizosphere.
细菌-真菌相互作用(BFIs)在生态系统动态中非常重要,尤其是在土壤根圈中。芽孢杆菌(Bacillus velezensis SQR9)和贵州毛霉(Trichoderma guizhouense NJAU 4742)因其在促进植物生长和保护宿主免受病原体侵害方面的作用而备受关注。在本研究中,我们利用这两种模式微生物来研究 BFIs。我们首先证明,虽然 B. velezensis 和 T. guizhouense 共同接种能促进番茄生长,但这两种微生物在琼脂凝固培养基上却表现出相互拮抗的作用。为了解决这一矛盾,我们开发了一种接种方法,允许 B. velezensis 在 T. guizhouense菌丝上定植,并进行了转录组分析。在真菌菌丝的定殖过程中,B. velezensis SQR9 会上调生物膜相关基因(如 eps、tasA 和 bslA)的表达,这与自由生活的细胞不同。这一结果表明,细胞外基质的表达与菌丝的定殖之间存在着错综复杂的联系。因此,删除 B. velezensis 的 epsD、tasA 或 epsD 和 tasA 基因都会减少 T. guizhouense 菌丝的定殖。我们的研究结果表明,土壤中的生物膜比我们所理解的要复杂得多,可能同时涉及竞争与合作。这些错综复杂的生物膜介导的 BFI 动态可能有助于在土壤微生物群中观察到非凡的多样性,为进一步探索植物根瘤层中的 BFI 提供了一个全新的视角。
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引用次数: 0
Effect of shear rate on early Shewanella oneidensis adhesion dynamics monitored by deep learning 通过深度学习监测剪切率对早期 Shewanella oneidensis 粘附动态的影响
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-16 DOI: 10.1016/j.bioflm.2024.100240
Lucie Klopffer , Nicolas Louvet , Simon Becker , Jérémy Fix , Cédric Pradalier , Laurence Mathieu
Understanding pioneer bacterial adhesion is essential to appreciate bacterial colonization and consider appropriate control strategies. This bacterial entrapment at the wall is known to be controlled by many physical, chemical or biological factors, including hydrodynamic conditions. However, due to the nature of early bacterial adhesion, i.e. a short and dynamic process with low biomass involved, such investigations are challenging. In this context, our study aimed to evaluate the effect of wall shear rate on the early bacterial adhesion dynamics. Firstly, at the population scale by assessing bacterial colonization kinetics and the mechanisms responsible for wall transfer under shear rates using a time-lapse approach. Secondly, at the individual scale, by implementing an automated image processing method based on deep learning to track each individual pioneer bacterium on the wall. Bacterial adhesion experiments are performed on a model bacterium (Shewanella oneidensis MR-1) at different shear rates (0 to1250 s−1) in a microfluidic system mounted under a microscope equipped with a CCD camera. Image processing was performed using a trained neural network (YOLOv8), which allowed information extraction, i.e. bacterial wall residence time and orientation for each adhered bacterium during pioneer colonization (14 min). Collected from over 20,000 bacteria, our results showed that adhered bacteria had a very short residence time at the wall, with over 70 % remaining less than 1 min. Shear rates had a non-proportional effect on pioneer colonization with a bell-shape profile suggesting that intermediate shear rates improved both bacterial wall residence time as well as colonization rate and level. This lack of proportionality highlights the dual effect of wall shear rate on early bacterial colonization; initially increasing it improves bacterial colonization up to a threshold, beyond which it leads to higher bacterial wall detachment. The present study provides quantitative data on the individual dynamics of just adhered bacteria within a population when exposed to different rates of wall shear.
了解先驱细菌的粘附性对于了解细菌的定植和考虑适当的控制策略至关重要。众所周知,细菌在壁上的滞留受许多物理、化学或生物因素(包括流体动力学条件)的控制。然而,由于早期细菌粘附的性质,即涉及生物量较低的短暂动态过程,此类研究具有挑战性。在这种情况下,我们的研究旨在评估壁剪切率对早期细菌粘附动态的影响。首先,在群体尺度上,使用延时方法评估细菌定植动力学和剪切率下的菌壁转移机制。其次,在个体尺度上,采用基于深度学习的自动图像处理方法来追踪壁上的每个先驱细菌。在装有 CCD 摄像机的显微镜下安装的微流体系统中,在不同剪切速率(0 至 1250 s-1)下对模型细菌(Shewanella oneidensis MR-1)进行了细菌粘附实验。使用训练有素的神经网络(YOLOv8)进行图像处理,从而提取信息,即在先驱定殖期间(14 分钟)每个附着细菌的菌壁停留时间和方向。我们从 20,000 多个细菌中收集的结果显示,附着细菌在菌壁上的停留时间非常短,70% 以上的细菌停留时间不到 1 分钟。剪切率对先驱者的定植有非比例影响,呈钟形分布,表明中等剪切率既能改善细菌在壁上的停留时间,也能提高定植率和水平。这种不成正比的现象凸显了壁剪切率对早期细菌定殖的双重影响;最初,提高壁剪切率可改善细菌的定殖,但要达到一个临界值,超过这个临界值就会导致更高的细菌壁脱离。本研究提供了关于暴露于不同壁剪切率时种群中刚粘附细菌个体动态的定量数据。
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引用次数: 0
Small cyclic dipeptide produced by Lactobacillus rhamnosus with anti-biofilm properties against Streptococcus mutans biofilm 鼠李糖乳杆菌产生的具有抗生物膜特性的小环状二肽可抗变异链球菌生物膜
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-06 DOI: 10.1016/j.bioflm.2024.100237
Rashmi Niranjan , Sachin Patil , Amrita Dubey , Bimlesh Lochab , Richa Priyadarshini
The human oral cavity harbors many bacterial species collectively termed the oral microbiome and is integral for maintaining oral health. Dysbiosis of oral microbiota leads to common oral diseases, including dental caries, gingivitis, and periodontitis. Streptococcus mutans is the primary causative agent of dental caries. Studies have explored the use of probiotic Lactobacillus spp. to mitigate S. mutans biofilms. In the present study, we have tested the use of Lactobacillus rhamnosus extracts/metabolites for anti-biofilm properties. A small organic compound/metabolite was isolated from the cell-free supernatant of L. rhamnosus, and this metabolite resulted in a dose-dependent inhibition of S. mutans biofilms. Confocal microscopy revealed that the thickness of S. mutans biofilms was severely reduced upon metabolite treatment. With the help of FTIR spectra and mass spectrometry analysis, the molecular formula (C11H19O2N2) was deduced. The inhibitor compound was further identified as a small cyclic peptide, cyclo (-L-Leu-L-Pro). Our data also revealed that isolated metabolite impedes S. mutans biofilms by modulating gene expression of several essential genes involved in biofilm establishment.
人类口腔中蕴藏着许多细菌物种,统称为口腔微生物群,是维持口腔健康不可或缺的一部分。口腔微生物群的菌群失调会导致常见的口腔疾病,包括龋齿、牙龈炎和牙周炎。变异链球菌是龋齿的主要致病菌。有研究探讨了使用益生菌乳酸杆菌来减轻变异链球菌生物膜。在本研究中,我们测试了鼠李糖乳杆菌提取物/代谢物的抗生物膜特性。我们从鼠李糖乳杆菌的无细胞上清液中分离出了一种小分子有机化合物/代谢物,这种代谢物能对变异沙雷氏菌生物膜产生剂量依赖性抑制作用。共聚焦显微镜显示,代谢物处理后,突变杆状病毒生物膜的厚度大大降低。在傅立叶变换红外光谱和质谱分析的帮助下,推断出了其分子式(C11H19O2N2)。该抑制剂化合物被进一步鉴定为一种小型环肽,即 cyclo (-L-Leu-L-Pro)。我们的数据还显示,分离出的代谢物通过调节参与生物膜建立的几个重要基因的基因表达,阻碍变异棒状杆菌生物膜的形成。
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引用次数: 0
Molecular characterization of gliotoxin synthesis in a biofilm model of Aspergillus fumigatus 烟曲霉生物膜模型中胶质毒素合成的分子特征
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-06 DOI: 10.1016/j.bioflm.2024.100238
Alicia Gomez-Lopez , Candela Fernandez-Fernandez
Mycelial growth as biofilm structures and the activation of secondary metabolism leading to the release of low-molecular-weight molecules (known as secondary metabolites), are among the previously described strategies used by the filamentous fungi Aspergillus fumigatus to adapt and survive. Our study unveils that A. fumigatus strains can activate mechanisms linked to the production of gliotoxin, a crucial metabolite for Aspergillus, in the established in vitro biofilm model. Gliotoxin production exhibits strain- and time-dependent patterns and is associated -in a coordinated manner-with the expression levels of several genes involved in its regulation and synthesis. The transcriptional study of some of these genes by qPCR shows temporal inter-strain differences, which correlate with those obtained when evaluating the amounts of metabolites produced. Given that A. fumigatus forms biofilm structures within the site of infection, understanding the regulation of gliotoxin biosynthesis may have a role in the evolution of Aspergillus infection and guide diagnostic and treatment strategies.
作为生物膜结构的菌丝生长和激活次生代谢导致低分子量分子(称为次生代谢物)的释放,是丝状真菌烟曲霉先前描述的适应和生存策略之一。我们的研究揭示了烟曲霉菌株能够在已建立的体外生物膜模型中激活与产生胶质毒素有关的机制,胶质毒素是曲霉的一种重要代谢物。胶毒素的产生表现出菌株和时间依赖性模式,并与参与其调节和合成的多个基因的表达水平相关。通过 qPCR 对其中一些基因的转录研究显示,菌株间存在时间差异,这与评估代谢物产生量时获得的结果相关。鉴于烟曲霉会在感染部位形成生物膜结构,了解胶毒素生物合成的调控可能会对曲霉感染的进化产生影响,并指导诊断和治疗策略。
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引用次数: 0
Transcatheter aortic valve implantation (TAVI) prostheses in vitro - biofilm formation and antibiotic effects 体外经导管主动脉瓣植入(TAVI)假体--生物膜的形成和抗生素的作用
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.bioflm.2024.100236
Torgny Sunnerhagen , Thomas Bjarnsholt , Klaus Qvortrup , Henning Bundgaard , Claus Moser

Background

Transcatheter aortic valve implantation (TAVI) is a percutaneous catheter-based treatment of aortic stenosis as an alternative to open heart valve surgery. In cases of TAVI endocarditis, the treatment possibilities may be limited as surgical removal of the infected valve may be associated with a high risk in elderly, comorbid or frail patients. The propensity of bacteria to form a biofilm on foreign material is assumed to be of importance part of the disease process in TAVI endocarditis, but no studies on biofilm formation on TAVI valves have been conducted. We hypothesize that Staphylococcus aureus and Enterococcus faecalis biofilm formation on TAVI valves may have an impact on antibiotic tolerance and non-surgical cure rates.

Methods

TAVI valves (pieces including part of the metal frame, approximately 1 cm wide) were exposed to either species in vitro in LB-Krebs Ringer medium at 37 °C, with the bacterial count being assessed by culturing of sonicated TAVI pieces and broth at 0, 4, 18 and 24 h after bacterial exposure. Scanning electron microscopy (SEM) was performed. Effects of ampicillin, gentamicin, moxifloxacin, rifampicin (for S. aureus), and ceftriaxone (for E. faecalis) at 5 times minimal inhibitory concentration were tested alone and in combination with ampicillin. Antibiotics were added to biofilm aged 0 or 24 h and the effects assessed.

Results

Exposure for 15 min established attachment to all of valve pieces. SEM findings were consistent with biofilm formation and suggested lower amounts of bacteria on the metal compared to the tissue part of the TAVI valves. The number of bacteria attached to the TAVI valves increased until 24 h of incubation from less than 10^1 to a level of approximately 10^9 CFU/g. The bacteria became more tolerant to antibiotics on the TAVI valves over time, with the bactericidal effect against 24-h old biofilm being significantly less effective than against 0-h old biofilm depending on antibiotic.

Conclusions

The results indicate that bacteria can adhere to metal and tissue parts of the TAVI valves within minutes after an exposure which is comparable to transient bacteremia in vivo, and that the bacteria rapidly gain biofilm properties, associated with significantly reduced antibiotic effect.
背景导管主动脉瓣植入术(TAVI)是一种经皮导管治疗主动脉瓣狭窄的方法,可替代开胸心脏瓣膜手术。在 TAVI 发生心内膜炎的情况下,由于手术切除受感染的瓣膜对高龄、合并症或体弱的患者来说风险较高,因此治疗的可能性有限。细菌在异物上形成生物膜的倾向被认为是 TAVI 心内膜炎疾病过程的重要组成部分,但目前还没有关于 TAVI 瓣膜上生物膜形成的研究。我们假设金黄色葡萄球菌和粪肠球菌在 TAVI 瓣膜上形成的生物膜可能会对抗生素耐受性和非手术治愈率产生影响。方法将 TAVI 瓣膜(包括部分金属框架,宽约 1 厘米)置于 37 °C 的 LB-Krebs Ringer 培养基中,在体外暴露于其中任一菌种,细菌暴露后 0、4、18 和 24 小时通过超声 TAVI 瓣膜和肉汤培养评估细菌计数。进行了扫描电子显微镜(SEM)检查。测试了最小抑菌浓度为 5 倍的氨苄西林、庆大霉素、莫西沙星、利福平(针对金黄色葡萄球菌)和头孢曲松(针对粪肠球菌)单独或与氨苄西林联合使用的效果。将抗生素添加到生物膜中 0 或 24 小时,并评估其效果。扫描电子显微镜的结果与生物膜的形成一致,表明与 TAVI 瓣膜的组织部分相比,金属上的细菌数量较少。培养 24 小时后,附着在 TAVI 瓣膜上的细菌数量从不到 10^1 增至约 10^9 CFU/g。随着时间的推移,细菌对 TAVI 瓣膜上抗生素的耐受性越来越强,根据抗生素的不同,对 24 小时生物膜的杀菌效果明显低于对 0 小时生物膜的杀菌效果。
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引用次数: 0
Effects of nanoparticles on anaerobic, anammox, aerobic, and algal-bacterial granular sludge: A comprehensive review 纳米颗粒对厌氧颗粒污泥、厌氧颗粒污泥、好氧颗粒污泥和藻菌颗粒污泥的影响:综述
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-10-24 DOI: 10.1016/j.bioflm.2024.100234
Alfonz Kedves , Zoltán Kónya
Nanoparticles (NPs) are of significant interest due to their unique properties, such as large surface area and high reactivity, which have facilitated advancements in various fields. However, their increased use raises concerns about environmental impacts, including on wastewater treatment processes. This review examines the effects of different nanoparticles on anaerobic, anammox, aerobic, and algal-bacterial granular sludge used in wastewater treatment. CeO2 and Ag NPs demonstrated adverse effects on aerobic granular sludge (AGS), reducing nutrient removal and cellular function, while anaerobic granular sludge (AnGS) and anammox granular sludge (AxGS) showed greater resilience due to their higher extracellular polymeric substance (EPS) content. TiO2 NPs had fewer negative effects on algal-bacterial granular sludge (ABGS) than on AGS, as algae played a crucial role in enhancing EPS production and stabilizing the granules. The addition of Fe3O4 NPs significantly enhanced both aerobic and anammox granulation by reducing granulation time, promoting microbial interactions, improving granule stability, and increasing nitrogen removal efficiency, primarily through increased EPS production and enzyme activity. However, Cu and CuO NPs exhibited strong inhibitory effects on aerobic, anammox, and anaerobic systems, affecting EPS structure, cellular integrity, and microbial viability. ZnO NPs demonstrated dose-dependent toxicity, with higher concentrations inducing oxidative stress and reducing performance in AGS and AnGS, whereas AxGS and ABGS were more tolerant due to enhanced EPS production and algae-mediated protection. The existing knowledge gaps and directions for future research on NPs are identified and discussed.
纳米粒子(NPs)具有大表面积和高反应活性等独特性质,促进了各个领域的发展,因而备受关注。然而,纳米粒子的使用越来越多,引起了人们对环境影响的担忧,包括对废水处理过程的影响。本综述探讨了不同纳米粒子对用于废水处理的厌氧、厌氧、好氧和藻类细菌颗粒污泥的影响。CeO2 和 Ag NPs 对好氧颗粒污泥(AGS)产生了不利影响,降低了营养物质的去除率和细胞功能,而厌氧颗粒污泥(AnGS)和厌氧颗粒污泥(AxGS)由于胞外聚合物物质(EPS)含量较高,因此表现出更强的适应能力。TiO2 NPs 对藻类-细菌颗粒污泥(ABGS)的负面影响小于对 AGS 的影响,因为藻类在提高 EPS 产量和稳定颗粒污泥方面起着至关重要的作用。添加 Fe3O4 NPs 能显著提高好氧颗粒污泥和厌氧颗粒污泥的处理效果,主要是通过提高 EPS 产量和酶活性来缩短造粒时间、促进微生物相互作用、改善颗粒稳定性和提高脱氮效率。然而,Cu 和 CuO NPs 对好氧、厌氧和厌氧系统有很强的抑制作用,会影响 EPS 结构、细胞完整性和微生物活力。ZnO NPs表现出剂量依赖性毒性,较高浓度会诱发氧化应激并降低AGS和AnGS的性能,而AxGS和ABGS则由于EPS产量增加和藻类介导的保护作用而具有更强的耐受性。本文指出并讨论了现有的知识空白和未来对氮磷钾的研究方向。
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引用次数: 0
Relaxation-weighted MRI analysis of biofilm EPS: Differentiating biopolymers, cells, and water 生物膜 EPS 的松弛加权磁共振成像分析:区分生物聚合物、细胞和水
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-10-24 DOI: 10.1016/j.bioflm.2024.100235
Matthew R. Willett , Sarah L. Codd , Joseph D. Seymour , Catherine M. Kirkland
Biofilms are a highly complex community of microorganisms embedded in a protective extracellular polymeric substance (EPS). Successful biofilm control requires a variety of approaches to better understand the structure-function relationship of the EPS matrix. Magnetic resonance imaging (MRI) is a versatile tool which can measure spatial structure, diffusion, and flow velocities in three dimensions and in situ. It is well-suited to characterize biofilms under natural conditions and at different length scales. MRI contrast is dictated by T1 and T2 relaxation times which vary spatially depending on the local chemical and physical environment of the sample. Previous studies have demonstrated that MRI can provide important insights into the internal structure of biofilms, but the contribution of major biofilm components—such as proteins, polysaccharides, and cells—to MRI contrast is not fully understood. This study explores how these components affect contrast in T1-and T2-weighted MRI by analyzing artificial biofilms with well-defined properties modeled after aerobic granular sludge (AGS), compact spherical biofilm aggregates used in wastewater treatment. MRI of these biofilm models showed that certain gel-forming polysaccharides are a major source of T2 contrast, while other polysaccharides show minimal contrast. Proteins were found to reduce T2 contrast slightly when combined with polysaccharides, while cells had a negligible impact on T2 but showed T1 contrast. Patterns observed in the model biofilms served as a reference for examining T2 and T1-weighted contrast in the void spaces of two distinct AGS granules, allowing for a qualitative evaluation of the EPS components which may be present. Further insights provided by MRI may help improve understanding of the biofilm matrix and guide how to better manage biofilms in wastewater, clinical, and industrial settings.
生物膜是嵌入保护性胞外聚合物物质(EPS)的高度复杂的微生物群落。要成功控制生物膜,需要采用多种方法来更好地了解 EPS 基质的结构与功能关系。磁共振成像(MRI)是一种多功能工具,可在原位测量三维空间结构、扩散和流速。它非常适合在自然条件下以不同的长度尺度描述生物膜的特征。核磁共振成像的对比度由 T1 和 T2 松弛时间决定,而 T1 和 T2 松弛时间随样本当地的化学和物理环境而在空间上变化。以往的研究表明,核磁共振成像可为了解生物膜的内部结构提供重要信息,但人们对生物膜的主要成分(如蛋白质、多糖和细胞)对核磁共振成像对比度的影响还不完全了解。本研究以废水处理中使用的致密球形生物膜聚集体--好氧颗粒污泥(AGS)为模型,分析了具有明确性质的人工生物膜,从而探讨了这些成分如何影响 T1 和 T2 加权核磁共振成像的对比度。这些生物膜模型的核磁共振成像显示,某些凝胶形成的多糖是 T2 对比度的主要来源,而其他多糖显示的对比度很小。研究发现,蛋白质与多糖结合会略微降低 T2 对比度,而细胞对 T2 的影响可以忽略不计,但会显示出 T1 对比度。在模型生物膜中观察到的模式可作为参考,用于检查两种不同 AGS 颗粒空隙中的 T2 和 T1 加权对比度,从而对可能存在的 EPS 成分进行定性评估。核磁共振成像提供的进一步见解可能有助于加深对生物膜基质的了解,并指导如何更好地管理废水、临床和工业环境中的生物膜。
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引用次数: 0
Identification and comparison of protein composition of biofilms in response to EGCG from Enterococcus faecalis and Staphylococcus lugdunensis, which showed opposite patterns in biofilm-forming abilities 鉴定和比较粪肠球菌和卢格杜恩葡萄球菌生物膜对 EGCG 反应的蛋白质组成,这两种球菌的生物膜形成能力表现出相反的模式
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-10-24 DOI: 10.1016/j.bioflm.2024.100232
Jung-Ah Cho , Sangsoo Jeon , Youngmin Kwon , Yoo Jin Roh , Sukjin Shin , Chang-Hun Lee , Sung Jae Kim
Bacterial biofilm is resistant to conventional antibiotic treatments, leading to complications associated with many infection-related human diseases. Epigallocatechin Gallate (EGCG), a phenolic catechin enriched in green tea, is recognized for its anti-bacterial and anti-biofilm activities. In this study, we examined the protein components of the biofilms formed in the absence or presence of EGCG using Enterococcus faecalis and Staphylococcus lugdunensis, which had shown opposing patterns in biofilm formation. A clustering heatmap revealed that the two microorganisms expressed the different protein sets in response to EGCG. Proteins that were noticeably upregulated included those associated with stress responsiveness and gluconeogenesis in E. faecalis, and gene modification in S. lugdunensis. Conversely, downregulated proteins were related to tRNA-modifying enzyme activity in E. faecalis, and anabolic metabolism in S. lugdunensis. Among the proteins identified only in EGCG-responsive biofilms, enzymes involved in de novo purine biosynthesis were enriched in E. faecalis, while proteins likely to cause DNA instability and pathogenicity changes were abundantly present in S. lugdunensis. The classification based on gene ontology (GO) terms by microorganism exhibited that metabolic process or catabolic activity was at the top rank in E. faecalis with more than 33 proteins, and in S. lugdunensis, localization or transport was highly ranked with 4 proteins. These results support the hypothesis that EGCG might cause different cellular programs in each microorganism. Finally, comparison of the proteomes between two groups that form biofilms to similar extents discovered that 2 proteins were commonly found in the weak biofilm-forming groups (E. faecalis and EGCG-responding S. lugudunensis), whereas 9 proteins were common among the strong biofilm-forming groups (S. lugdunensis and EGCG-responding E. faecalis). It was suggested that these proteins could serve as potential indicators to detect the presence and predict the extent of biofilm formation by multiple microorganisms. Taken all together, proteomics data and analyses performed in this study provided useful and new information on the proteins embedded in the biofilms formed at the specific conditions, which can aid in diagnosis and the development of tailored treatment strategies.
细菌生物膜对传统抗生素治疗具有抗药性,导致许多与感染相关的人类疾病的并发症。表没食子儿茶素没食子酸酯(EGCG)是绿茶中富含的一种酚类儿茶素,其抗菌和抗生物膜活性已得到公认。在这项研究中,我们利用粪肠球菌和卢格杜恩葡萄球菌研究了在没有或有 EGCG 的情况下形成的生物膜的蛋白质成分,这两种球菌在生物膜形成过程中表现出截然相反的模式。聚类热图显示,这两种微生物对 EGCG 的反应表达了不同的蛋白质集。明显上调的蛋白质包括与粪肠球菌的应激反应能力和葡萄糖生成有关的蛋白质,以及与卢格杜氏菌的基因修饰有关的蛋白质。相反,下调的蛋白质在粪肠球菌中与 tRNA 修饰酶活性有关,在卢格杜氏菌中与合成代谢有关。在仅在 EGCG 反应型生物膜中发现的蛋白质中,参与嘌呤生物合成的酶在粪肠球菌中富集,而可能导致 DNA 不稳定和致病性变化的蛋白质则大量存在于 S. lugdunensis 中。根据基因本体论(GO)术语对微生物进行的分类显示,粪肠球菌的代谢过程或分解活动排在首位,有 33 个以上的蛋白质;而在卢格登氏菌中,定位或运输排在很高的位置,有 4 个蛋白质。这些结果支持了一种假设,即 EGCG 可能会在每种微生物中引起不同的细胞程序。最后,比较了形成生物膜程度相似的两组微生物的蛋白质组,发现形成生物膜程度弱的微生物组(E. faecalis 和 EGCG 对应的 S. lugudunensis)中常见 2 种蛋白质,而形成生物膜程度强的微生物组(S. lugdunensis 和 EGCG 对应的 E. faecalis)中常见 9 种蛋白质。研究表明,这些蛋白质可作为潜在的指标,用于检测多种微生物是否形成生物膜以及预测形成生物膜的程度。总之,本研究中的蛋白质组学数据和分析为特定条件下形成的生物膜中的蛋白质提供了有用的新信息,有助于诊断和制定有针对性的治疗策略。
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引用次数: 0
Cooperation between coagulase and von willebrand factor binding protein in Staphylococcus aureus fibrin pseudocapsule formation 金黄色葡萄球菌纤维蛋白假包囊形成过程中凝固酶和冯-威廉因子结合蛋白之间的合作
IF 5.9 Q1 MICROBIOLOGY Pub Date : 2024-10-23 DOI: 10.1016/j.bioflm.2024.100233
Dominique C.S. Evans , Amanda B. Khamas , Alex Payne-Dwyer , Adam J.M. Wollman , Kristian S. Rasmussen , Janne K. Klitgaard , Birgitte Kallipolitis , Mark C. Leake , Rikke L. Meyer
The major human pathogen Staphylococcus aureus forms biofilms comprising of a fibrin network that increases attachment to surfaces and shields bacteria from the immune system. It secretes two coagulases, Coagulase (Coa) and von Willebrand factor binding protein (vWbp), which hijack the host coagulation cascade and trigger the formation of this fibrin clot. However, it is unclear how Coa and vWbp contribute differently to the localisation and dynamics of clot assembly in growing biofilms.
Here, we address this question using high-precision time-resolved confocal microscopy of fluorescent fibrin to establish the spatiotemporal dynamics of fibrin clot formation in functional biofilms. We also use fluorescent fusion proteins to visualise the locations of Coa and vWbp in biofilms using both confocal laser scanning and high resolution highly inclined and laminated optical sheet microscopy. We visualise and quantify the spatiotemporal dynamics of fibrin production during initiation of biofilms in plasma amended with fluorescently labelled fibrinogen.
We find that human serum stimulates coagulase production, and that Coa and vWbp loosely associate to the bacterial cell surface. Coa localises to cell surfaces to produce a surface-attached fibrin pseudocapsule but can diffuse from cells to produce matrix-associated fibrin. vWbp produces matrix-associated fibrin in the absence of Coa, and furthermore accelerates pseudocapsule production when Coa is present. Finally, we observe that fibrin production varies across the biofilm. A sub-population of non-dividing cells does not produce any pseudocapsule but remains within the protective extended fibrin network, which could be important for the persistence of S. aureus biofilm infections as antibiotics are more effective against actively growing cells.
Our findings indicate a more cooperative role between Coa and vWbp in building fibrin networks than previously thought, and a bet-hedging cell strategy where some cells produce biofilm matrix while others do not, but instead assume a dormant phenotype that could be associated with antibiotic tolerance.
人类的主要病原体金黄色葡萄球菌会形成由纤维蛋白网络组成的生物膜,从而增加对物体表面的附着力,并使细菌免受免疫系统的攻击。它分泌两种凝固酶,即凝固酶(Coa)和冯-威廉因子结合蛋白(vWbp),这两种酶会劫持宿主凝血级联,并触发这种纤维蛋白凝块的形成。这里,我们利用荧光纤维蛋白的高精度时间分辨共聚焦显微镜来解决这个问题,从而确定功能性生物膜中纤维蛋白凝块形成的时空动态。我们还利用荧光融合蛋白,通过激光共聚焦扫描和高分辨率高倾斜层压光学薄片显微镜,观察生物膜中 Coa 和 vWbp 的位置。我们发现人血清会刺激凝固酶的产生,Coa 和 vWbp 会松散地与细菌细胞表面结合。Coa 定位于细胞表面,生成表面附着的纤维蛋白假囊,但也能从细胞中扩散出来,生成基质相关的纤维蛋白。最后,我们观察到纤维蛋白的产生在整个生物膜中各不相同。我们的研究结果表明,在构建纤维蛋白网络的过程中,Coa 和 vWbp 之间的合作作用比以前想象的要强,而且存在一种 "对冲 "细胞策略,即一些细胞产生生物膜基质,而另一些细胞则不产生,而是呈现出一种休眠表型,这可能与抗生素耐受性有关。
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引用次数: 0
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Biofilm
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