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Biomonitoring and Digital Data Technology as an Opportunity for Enhancing Animal Study Translation. 生物监测和数字数据技术作为加强动物研究翻译的机会。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilab018
Erwin B Defensor, Maria A Lim, Laura R Schaevitz

The failure of animal studies to translate to effective clinical therapeutics has driven efforts to identify underlying cause and develop solutions that improve the reproducibility and translatability of preclinical research. Common issues revolve around study design, analysis, and reporting as well as standardization between preclinical and clinical endpoints. To address these needs, recent advancements in digital technology, including biomonitoring of digital biomarkers, development of software systems and database technologies, as well as application of artificial intelligence to preclinical datasets can be used to increase the translational relevance of preclinical animal research. In this review, we will describe how a number of innovative digital technologies are being applied to overcome recurring challenges in study design, execution, and data sharing as well as improving scientific outcome measures. Examples of how these technologies are applied to specific therapeutic areas are provided. Digital technologies can enhance the quality of preclinical research and encourage scientific collaboration, thus accelerating the development of novel therapeutics.

动物研究未能转化为有效的临床治疗,这促使人们努力找出潜在的原因,并制定解决方案,以提高临床前研究的可重复性和可转译性。常见的问题围绕着研究设计、分析和报告,以及临床前和临床终点之间的标准化。为了满足这些需求,数字技术的最新进展,包括数字生物标志物的生物监测,软件系统和数据库技术的开发,以及人工智能在临床前数据集的应用,可以用来增加临床前动物研究的转化相关性。在这篇综述中,我们将描述如何应用一些创新的数字技术来克服研究设计、执行和数据共享中反复出现的挑战,并改善科学结果测量。提供了如何将这些技术应用于特定治疗领域的例子。数字技术可以提高临床前研究的质量,鼓励科学合作,从而加速新疗法的发展。
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引用次数: 1
"But Mouse, You Are Not Alone": On Some Severe Acute Respiratory Syndrome Coronavirus 2 Variants Infecting Mice. “但是老鼠,你并不孤单”:关于一些感染老鼠的严重急性呼吸综合征冠状病毒2变异。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilab031
Michael J Kuiper, Laurence O W Wilson, Shruthi Mangalaganesh, Carol Lee, Daniel Reti, Seshadri S Vasan

In silico predictions combined with in vitro, in vivo, and in situ observations collectively suggest that mouse adaptation of the severe acute respiratory syndrome 2 virus requires an aromatic substitution in position 501 or position 498 (but not both) of the spike protein's receptor binding domain. This effect could be enhanced by mutations in positions 417, 484, and 493 (especially K417N, E484K, Q493K, and Q493R), and to a lesser extent by mutations in positions 486 and 499 (such as F486L and P499T). Such enhancements, due to more favorable binding interactions with residues on the complementary angiotensin-converting enzyme 2 interface, are, however, unlikely to sustain mouse infectivity on their own based on theoretical and experimental evidence to date. Our current understanding thus points to the Alpha, Beta, Gamma, and Omicron variants of concern infecting mice, whereas Delta and "Delta Plus" lack a similar biomolecular basis to do so. This paper identifies 11 countries (Brazil, Chile, Djibouti, Haiti, Malawi, Mozambique, Reunion, Suriname, Trinidad and Tobago, Uruguay, and Venezuela) where targeted local field surveillance of mice is encouraged because they may have come in contact with humans who had the virus with adaptive mutation(s). It also provides a systematic methodology to analyze the potential for other animal reservoirs and their likely locations.

结合体外、体内和原位观察的计算机预测共同表明,小鼠对严重急性呼吸综合征2型病毒的适应需要刺突蛋白受体结合结构域501或498位(但不是两者)的芳香取代。这种作用可以通过417、484和493位的突变(特别是K417N、E484K、Q493K和Q493R)增强,并且在较小程度上通过486和499位的变异(例如F486L和P499T)增强。然而,根据迄今为止的理论和实验证据,由于与互补血管紧张素转换酶2界面上的残基的更有利的结合相互作用,这种增强不太可能单独维持小鼠的传染性。因此,我们目前的理解指向感染小鼠的阿尔法、贝塔、伽马和奥密克戎变异毒株,而德尔塔和“德尔塔+”缺乏类似的生物分子基础。本文确定了11个国家(巴西、智利、吉布提、海地、马拉维、莫桑比克、留尼汪、苏里南、特立尼达和多巴哥、乌拉圭和委内瑞拉),这些国家鼓励对小鼠进行有针对性的当地实地监测,因为它们可能接触过具有适应性突变病毒的人类。它还提供了一种系统的方法来分析其他动物宿主的潜力及其可能的位置。
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引用次数: 1
Laboratory Codes in Nomenclature and Scientific Communication (Advancing Organism Nomenclature in Scientific Communication to Improve Research Reporting and Reproducibility). 命名法和科学传播中的实验室代码(推进科学传播中的生物命名法以提高研究报告和可重复性)。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac016
Cory F Brayton

Laboratory registration codes, also known as laboratory codes or lab codes, are a key element in standardized laboratory animal and genetic nomenclature. As such they are critical to accurate scientific communication and to research reproducibility and integrity. The original committee on Mouse Genetic Nomenclature published nomenclature conventions for mice genetics in 1940, and then conventions for inbred strains in 1952. Unique designations were needed, and have been in use since the 1950s, for the sources of animals and substrains, for the laboratories that identified new alleles or mutations, and then for developers of transgenes and induced mutations. Current laboratory codes are typically a 2- to 4-letter acronym for an institution or an investigator. Unique codes are assigned from the International Laboratory Code Registry, which was developed and is maintained by ILAR in the National Academies (National Academies of Sciences Engineering and Medicine and previously National Academy of Sciences). As a resource for the global research community, the registry has been online since 1997. Since 2003 mouse and rat genetic and strain nomenclature rules have been reviewed and updated annually as a joint effort of the International Committee on Standardized Genetic Nomenclature for Mice and the Rat Genome and Nomenclature Committee. The current nomenclature conventions (particularly conventions for non-inbred animals) are applicable beyond rodents, although not widely adopted. Ongoing recognition, since at least the 1930s, of the research relevance of genetic backgrounds and origins of animals, and of spontaneous and induced genetic variants speaks to the need for broader application of standardized nomenclature for animals in research, particularly given the increasing numbers and complexities of genetically modified swine, nonhuman primates, fish, and other species.

实验室注册代码,也称为实验室代码或实验室代码,是标准化实验动物和遗传命名法的关键要素。因此,它们对准确的科学传播以及研究的可重复性和完整性至关重要。最初的小鼠遗传命名委员会在1940年发表了小鼠遗传命名公约,然后在1952年发表了近交系的命名公约。自20世纪50年代以来,动物和亚菌株的来源、鉴定新等位基因或突变的实验室以及转基因和诱导突变的开发人员都需要独特的名称,并且这种名称一直在使用。目前的实验室代码通常是一个机构或研究者的2到4个字母的缩写。国际实验室代码登记处分配了独特的代码,该登记处由ILAR在国家科学院(国家科学院、工程和医学院,以前是国家科学院)中开发和维护。作为全球研究界的资源,该注册表自1997年以来一直在线。自2003年以来,小鼠和大鼠遗传和品系命名规则每年都要进行审查和更新,这是国际小鼠标准化遗传命名委员会和大鼠基因组和命名委员会的共同努力。目前的命名公约(特别是非近亲繁殖动物的公约)适用于啮齿类以外的动物,尽管没有被广泛采用。至少从20世纪30年代开始,对动物的遗传背景和起源以及自发和诱导的遗传变异的研究相关性的持续认识表明,需要在研究中更广泛地应用动物的标准化命名法,特别是考虑到转基因猪、非人灵长类动物、鱼类和其他物种的数量和复杂性的增加。
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引用次数: 0
Beyond the Laboratory: Emerging Landscape of Animal Studies - the Influence of National Academies of Sciences Activities and Publications. 超越实验室:动物研究的新兴景观-国家科学院活动和出版物的影响。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac010
B Natterson-Horowitz, Amelia Reynolds
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引用次数: 0
Research Relevant Background Lesions and Conditions: Ferrets, Dogs, Swine, Sheep, and Goats. 研究相关背景病变和条件:雪貂,狗,猪,绵羊和山羊。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilab005
Kristi L Helke, David K Meyerholz, Amanda P Beck, Eric R Burrough, Rachel J Derscheid, Christiane Löhr, Elizabeth F McInnes, Cheryl L Scudamore, Cory F Brayton

Animal models provide a valuable tool and resource for biomedical researchers as they investigate biological processes, disease pathogenesis, novel therapies, and toxicologic studies. Interpretation of animal model data requires knowledge not only of the processes/diseases being studied but also awareness of spontaneous conditions and background lesions in the model that can influence or even confound the study results. Species, breed/stock, sex, age, anatomy, physiology, diseases (noninfectious and infectious), and neoplastic processes are model features that can impact the results as well as study interpretation. Here, we review these features in several common laboratory animal species, including ferret, dog (beagle), pig, sheep, and goats.

动物模型为生物医学研究人员研究生物过程、疾病发病机制、新疗法和毒理学研究提供了宝贵的工具和资源。对动物模型数据的解释不仅需要了解所研究的过程/疾病,还需要了解模型中可能影响甚至混淆研究结果的自发条件和背景病变。物种、品种/存量、性别、年龄、解剖学、生理学、疾病(非传染性和传染性)和肿瘤过程都是影响结果和研究解释的模型特征。在这里,我们回顾了几种常见的实验动物物种的这些特征,包括雪貂、狗(比格犬)、猪、绵羊和山羊。
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引用次数: 4
Research-Relevant Background Lesions and Conditions in Common Avian and Aquatic Species. 研究相关背景:常见鸟类和水生物种的病变和状况。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilab008
Lisa M Mangus, Monique S França, H L Shivaprasad, Jeffrey C Wolf

Non-mammalian vertebrates including birds, fish, and amphibians have a long history of contributing to ground-breaking scientific discoveries. Because these species offer several experimental advantages over higher vertebrates and share extensive anatomic and genetic homology with their mammalian counterparts, they remain popular animal models in a variety of fields such as developmental biology, physiology, toxicology, drug discovery, immunology, toxicology, and infectious disease. As with all animal models, familiarity with the anatomy, physiology, and spontaneous diseases of these species is necessary for ensuring animal welfare, as well as accurate interpretation and reporting of study findings. Working with avian and aquatic species can be especially challenging in this respect due to their rich diversity and array of unique adaptations. Here, we provide an overview of the research-relevant anatomic features, non-infectious conditions, and infectious diseases that impact research colonies of birds and aquatic animals, including fish and Xenopus species.

包括鸟类、鱼类和两栖动物在内的非哺乳动物脊椎动物在为突破性的科学发现做出贡献方面有着悠久的历史。由于这些物种在实验上比高等脊椎动物有一些优势,并且与哺乳动物有广泛的解剖和遗传同源性,因此它们在发育生物学、生理学、毒理学、药物发现、免疫学、毒理学和传染病等各个领域仍然是受欢迎的动物模型。与所有动物模型一样,熟悉这些物种的解剖、生理和自发疾病对于确保动物福利以及准确解释和报告研究结果是必要的。在这方面,鸟类和水生物种的工作尤其具有挑战性,因为它们具有丰富的多样性和一系列独特的适应性。在这里,我们提供了研究相关的解剖特征,非传染性条件和传染病,影响研究群体的鸟类和水生动物,包括鱼类和爪蟾物种。
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引用次数: 1
Guide for Laboratory Animal Facilities and Care. 实验动物设施和护理指南。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac012
The Animal Care Panel is a nonprofit educational association of individuals and institutions concerned with the production, care, and study of laboratory animals. The entire United States and several foreign countries are represented in its membership. The Panel provides for the exchange of scientific information on all phases of laboratory animal care. It compiles and distributes information on films dealing with the handling of laboratory animals, and has initiated an animal technicians' training program. It publishes a bimonthly journal, "Laboratory Animal Care;" sponsors annual awards designed to encourage and reward outstanding accomplishment in the improvement of the care and quality of laboratory animals; and maintains close liaison with the Institute of Laboratory Resources (National Research Council), the American Veterinary Medical Association (through the American College of Laboratory Animal Medicine), the Laboratory Animal Breeders Association, and the National Society for Medical Research. Through its Animal Facilities Standards Committee, the Panel gathers and examines information that will aid in the establishment of high standards for the care of animals. The Guide for  Laboratory  Animal  Facilities and  Care was adopted by the Institute of Laboratory Animal Resources, National Academy of Sciences-National Research Council, on January 28, 1963.
动物保护小组是一个非营利性的教育协会,由关注实验动物生产、护理和研究的个人和机构组成。整个美国和其他几个国家都是其成员。小组就实验动物护理各阶段的科学信息进行交流。它编纂和分发有关处理实验动物的影片资料,并发起了一项动物技术人员培训计划。它出版了一份双月刊《实验动物护理》,赞助年度奖励,旨在鼓励和奖励在改善实验动物的护理和质量方面取得杰出成就的人;并与实验室资源研究所(国家研究委员会)、美国兽医协会(通过美国实验动物医学学院)、实验动物育种者协会和国家医学研究学会保持密切联系。该小组通过其动物设施标准委员会,收集和审查有助于建立高标准的动物护理的信息。1963年1月28日,美国国家科学院国家研究委员会实验动物资源研究所通过了《实验动物设施和护理指南》。
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引用次数: 8
What Is the ILAR? ILAR是什么?
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac007
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引用次数: 0
The ILAR Journal Is Taking a Hiatus. ILAR杂志正在停刊。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac008
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引用次数: 0
History of the National Academies of Sciences, Engineering, and Medicine's Institute for Laboratory Animal Research. 美国国家科学院、工程院和医学院实验动物研究所的历史。
IF 2.5 3区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-12-31 DOI: 10.1093/ilar/ilac017
Lewis B Kinter, Robert C Dysko, Barbara Natterson-Horowitz, Cory F Brayton

The Institute for Laboratory Animal Research (ILAR) was created within the National Academies of Sciences, Engineering, and Medicine (National Academies) in 1953 when biomedical research using animals was in its infancy in terms of quantity, quality, complexity, sophistication, and care. Over the intervening 69 years, ILAR has witnessed unprecedented growth, followed by unprecedented decline, and then regrowth in usage of specific species and models and an overall shift in experimental burden away from larger to smaller species (ie, mice, fish, and rats). ILAR has contributed much to the evolution of necessary research using animals and animal models for the benefit of humans, animals, and the environment and to the development and implementation of humane principles and standards for care and use of research animals. ILAR has served as a "neutral broker" seeking consensus, solutions, common ground, and pathways forward for all professional constituencies engaged in conduct of animal research. In 2022, ILAR will become the Board on Animal Health Sciences, Conservation, and Research (BAHSCR) within the Division on Earth and Life Studies of the National Academies and the ILAR Journal will pause publication with volume 62. This manuscript recounts the history and accomplishments of ILAR 1953-2022, emphasizing the past 2 decades. The manuscript draws upon ILAR's communications and previously published histories to document ILAR's leaders, reports, publications, conferences, workshops, and roundtables using text, tables, references, and extensive supplemental tables. The authors' intention is to provide the scientific community with a single source document for ILAR, and they apologize for any omissions and errors.

实验动物研究所(ILAR)于1953年在美国国家科学院、工程院和医学院(国家科学院)内成立,当时使用动物进行生物医学研究在数量、质量、复杂性、复杂性和护理方面都处于起步阶段。在过去的69年中,ILAR经历了前所未有的增长,随后是前所未有的下降,然后在特定物种和模型的使用方面再次增长,并且实验负担从较大物种转向较小物种(即小鼠、鱼类和大鼠)。为了人类、动物和环境的利益,ILAR对利用动物和动物模型进行必要研究的发展作出了很大贡献,并为研究动物的护理和使用制定和实施了人道原则和标准。ILAR作为“中立的中间人”,为从事动物研究的所有专业团体寻求共识、解决方案、共同点和前进道路。2022年,ILAR将成为美国国家科学院地球与生命研究部下属的动物健康科学、保护和研究委员会(BAHSCR), ILAR杂志将暂停第62卷的出版。这份手稿叙述了ILAR 1953-2022的历史和成就,强调了过去20年。手稿借鉴了国际劳工协会的通讯和以前出版的历史,用文本、表格、参考文献和广泛的补充表格记录了国际劳工协会的领导人、报告、出版物、会议、讲习班和圆桌会议。作者的意图是向科学界提供ILAR的单一来源文件,他们为任何遗漏和错误道歉。
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引用次数: 0
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