Pub Date : 2025-02-11DOI: 10.1021/acs.joc.4c0293010.1021/acs.joc.4c02930
Xiaoming Ma*, Zijie Gao, Jiawei Niu, Sai Zhang, Lingfeng Luo, Shenghu Yan, Qiang Zhang and Wei Zhang*,
A one-pot synthesis of a tricyclic guanidine scaffold is developed. The azido-bearing [3 + 2] adducts are used for cascade azide-isocyanide cross-coupling/nucleophilic cyclization/lactamization to afford highly condensed polyheterocycles. A wide range of azido-containing [3 + 2] adducts and isocyanides are tolerated in the sequential reactions.
{"title":"Cascade Pd-Catalyzed Azide-Isocyanide Cross Coupling/Cyclization/Lactamization Reactions for the Synthesis of Tricyclic Guanidine-Containing Polyheterocycles","authors":"Xiaoming Ma*, Zijie Gao, Jiawei Niu, Sai Zhang, Lingfeng Luo, Shenghu Yan, Qiang Zhang and Wei Zhang*, ","doi":"10.1021/acs.joc.4c0293010.1021/acs.joc.4c02930","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02930https://doi.org/10.1021/acs.joc.4c02930","url":null,"abstract":"<p >A one-pot synthesis of a tricyclic guanidine scaffold is developed. The azido-bearing [3 + 2] adducts are used for cascade azide-isocyanide cross-coupling/nucleophilic cyclization/lactamization to afford highly condensed polyheterocycles. A wide range of azido-containing [3 + 2] adducts and isocyanides are tolerated in the sequential reactions.</p>","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"90 7","pages":"2707–2716 2707–2716"},"PeriodicalIF":3.3,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143452585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alex Iglesias-Reguant, Izabela Barańska, Damian Plażuk, Robert Zaleśny, Josep M. Luis, Borys Ośmiałowski
The structural and photophysical properties in the halogen bonding environment were thoroughly studied for a newly synthesized series of fluorescent dyes and their model derivatives. The analysis revealed that the ground-state interactions among both series are likewise. The fluorescent dyes have push–pull topology, and there is a low-lying charge-transfer (CT) excited state in their electronic structure. In order to study the effect of intermolecular interactions on the photophysical parameters of the CT excited state, a palette of solvents was used (C6F6, C6F5Cl, C6F5Br, and C6F5I). Our studies revealed that the weak halogen bonding between the perfluorohaloarene solvent and the heterocyclic core of the dyes enhances the CT in their excited states. The results also demonstrated that the position of the heterocyclic nitrogen atom in the acceptor core simultaneously controls the directionality of the intermolecular interaction and influences both the emission wavelength and the fluorescence quantum yield. Experimental data were further supported by the results of quantum-chemical calculations. Overall, the study establishes a direct link between the topology of a moiety prone to specific intermolecular interactions and the photophysical properties of fluorescent probes.
{"title":"Isoelectronic Push–Pull Fluorescent Difluoroborates: Halogen Bonding and Photophysical Properties","authors":"Alex Iglesias-Reguant, Izabela Barańska, Damian Plażuk, Robert Zaleśny, Josep M. Luis, Borys Ośmiałowski","doi":"10.1021/acs.joc.4c03077","DOIUrl":"https://doi.org/10.1021/acs.joc.4c03077","url":null,"abstract":"The structural and photophysical properties in the halogen bonding environment were thoroughly studied for a newly synthesized series of fluorescent dyes and their model derivatives. The analysis revealed that the ground-state interactions among both series are likewise. The fluorescent dyes have push–pull topology, and there is a low-lying charge-transfer (CT) excited state in their electronic structure. In order to study the effect of intermolecular interactions on the photophysical parameters of the CT excited state, a palette of solvents was used (C<sub>6</sub>F<sub>6</sub>, C<sub>6</sub>F<sub>5</sub>Cl, C<sub>6</sub>F<sub>5</sub>Br, and C<sub>6</sub>F<sub>5</sub>I). Our studies revealed that the weak halogen bonding between the perfluorohaloarene solvent and the heterocyclic core of the dyes enhances the CT in their excited states. The results also demonstrated that the position of the heterocyclic nitrogen atom in the acceptor core simultaneously controls the directionality of the intermolecular interaction and influences both the emission wavelength and the fluorescence quantum yield. Experimental data were further supported by the results of quantum-chemical calculations. Overall, the study establishes a direct link between the topology of a moiety prone to specific intermolecular interactions and the photophysical properties of fluorescent probes.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"65 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143385055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Stephanie Felten, Cyndi Qixin He, Marion H. Emmert
We report a general C–H aminoalkylation of 5-membered heterocycles through a combined machine learning/experimental workflow. Our work describes previously unknown C–H functionalization reactivity and creates a predictive machine learning (ML) model through iterative refinement over 6 rounds of active learning. The initial model established with 1,3-azoles predicts the reactivities of N-aryl indazoles, 1,2,4-triazolopyrazines, 1,2,3-thiadiazoles, and 1,3,4-oxadiazoles, while other substrate classes (e.g., pyrazoles and 1,2,4-triazoles) are not predicted well. The final model includes the reactivities of additional heterocyclic scaffolds in the training data, which results in high predictive accuracy across all of the tested cores. The high prediction performance is shown both within the training set via cross-validation (CV R2 = 0.81) and when predicting unseen substrates of diverse molecular weight and structure (Test R2 = 0.95). The concept of feature engineering is discussed, and we benchmark mechanistically related DFT-based features that are more time-intensive and laborious in comparison with molecular descriptors and fingerprints. Importantly, this work establishes novel reactivity for heterocycles for which C–H functionalization methods are underdeveloped. Since such heterocycles are key motifs in drug discovery and development, we expect this work to be of significant use to the synthetic and synthesis-oriented ML communities.
{"title":"C–H Aminoalkylation of 5-Membered Heterocycles: Influence of Descriptors, Data Set Size, and Data Quality on the Predictiveness of Machine Learning Models and Expansion of the Substrate Space Beyond 1,3-Azoles","authors":"Stephanie Felten, Cyndi Qixin He, Marion H. Emmert","doi":"10.1021/acs.joc.4c02574","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02574","url":null,"abstract":"We report a general C–H aminoalkylation of 5-membered heterocycles through a combined machine learning/experimental workflow. Our work describes previously unknown C–H functionalization reactivity and creates a predictive machine learning (ML) model through iterative refinement over 6 rounds of active learning. The initial model established with 1,3-azoles predicts the reactivities of <i>N</i>-aryl indazoles, 1,2,4-triazolopyrazines, 1,2,3-thiadiazoles, and 1,3,4-oxadiazoles, while other substrate classes (e.g., pyrazoles and 1,2,4-triazoles) are not predicted well. The final model includes the reactivities of additional heterocyclic scaffolds in the training data, which results in high predictive accuracy across all of the tested cores. The high prediction performance is shown both within the training set via cross-validation (CV <i>R</i><sup>2</sup> = 0.81) and when predicting unseen substrates of diverse molecular weight and structure (Test <i>R</i><sup>2</sup> = 0.95). The concept of feature engineering is discussed, and we benchmark mechanistically related DFT-based features that are more time-intensive and laborious in comparison with molecular descriptors and fingerprints. Importantly, this work establishes novel reactivity for heterocycles for which C–H functionalization methods are underdeveloped. Since such heterocycles are key motifs in drug discovery and development, we expect this work to be of significant use to the synthetic and synthesis-oriented ML communities.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"132 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143393793","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A one-pot synthesis of a tricyclic guanidine scaffold is developed. The azido-bearing [3 + 2] adducts are used for cascade azide-isocyanide cross-coupling/nucleophilic cyclization/lactamization to afford highly condensed polyheterocycles. A wide range of azido-containing [3 + 2] adducts and isocyanides are tolerated in the sequential reactions.
{"title":"Cascade Pd-Catalyzed Azide-Isocyanide Cross Coupling/Cyclization/Lactamization Reactions for the Synthesis of Tricyclic Guanidine-Containing Polyheterocycles","authors":"Xiaoming Ma, Zijie Gao, Jiawei Niu, Sai Zhang, Lingfeng Luo, Shenghu Yan, Qiang Zhang, Wei Zhang","doi":"10.1021/acs.joc.4c02930","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02930","url":null,"abstract":"A one-pot synthesis of a tricyclic guanidine scaffold is developed. The azido-bearing [3 + 2] adducts are used for cascade azide-isocyanide cross-coupling/nucleophilic cyclization/lactamization to afford highly condensed polyheterocycles. A wide range of azido-containing [3 + 2] adducts and isocyanides are tolerated in the sequential reactions.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"70 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143385054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11DOI: 10.1021/acs.joc.4c0312610.1021/acs.joc.4c03126
Amit Kumar, Gaddam Mahesh, Jagadeesh Babu Nanubolu and Gangarajula Sudhakar*,
We intended to realize aryl vinyl oxetane as a 4π-electrocyclization precursor to access indene ethanol. Interestingly, we found that the readily accessible aryl vinyl 1,3-diol, an intermediate en route to the synthesis of oxetane, is an equally potential precursor for the anticipated cyclization. Moreover, aryl vinyl 1,3-diol/oxetane and indene ethanol readily reacted with the subsequently added (het)aromatic aldehydes, providing various indene oxepines/acetaldehydes. Additionally, indenyl aldehyde served as a synthetic handle for FGI, further expanding this protocol’s scope.
{"title":"Electrocyclization of Arylvinyl Oxetane/1,3-Diol to Substituted Indenyl Acetaldehyde via Indene–Ethanol, Oxepine, and a 1,6-Hydride Shift","authors":"Amit Kumar, Gaddam Mahesh, Jagadeesh Babu Nanubolu and Gangarajula Sudhakar*, ","doi":"10.1021/acs.joc.4c0312610.1021/acs.joc.4c03126","DOIUrl":"https://doi.org/10.1021/acs.joc.4c03126https://doi.org/10.1021/acs.joc.4c03126","url":null,"abstract":"<p >We intended to realize aryl vinyl oxetane as a 4π-electrocyclization precursor to access indene ethanol. Interestingly, we found that the readily accessible aryl vinyl 1,3-diol, an intermediate en route to the synthesis of oxetane, is an equally potential precursor for the anticipated cyclization. Moreover, aryl vinyl 1,3-diol/oxetane and indene ethanol readily reacted with the subsequently added (het)aromatic aldehydes, providing various indene oxepines/acetaldehydes. Additionally, indenyl aldehyde served as a synthetic handle for FGI, further expanding this protocol’s scope.</p>","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"90 7","pages":"2800–2805 2800–2805"},"PeriodicalIF":3.3,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143452586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11DOI: 10.1021/acs.joc.4c0301110.1021/acs.joc.4c03011
Thillaiarasi Sukumar, Mahesh Kumar Ravva and Baswanth Oruganti*,
Diarylethene photoswitches featuring azole-based diaryl units combined with benzoheteroarene π-linkers have gained significant research interest in recent years due to their potential to achieve higher photocyclization efficiencies compared to conventional dithienylethene switches. In this work, we investigate the suitability of these photoswitches for molecular solar thermal energy storage (MOST) applications through computational modeling of their electrocyclization and cycloreversion reactions. Our calculations demonstrate that it is possible to achieve simultaneously both large energy-storage densities (0.29–0.35 MJ kg–1) and prolonged energy-storage times (half-lives of up to 124 days) under ambient conditions in dithiazolyl and dioxazolyl switches containing six distinct benzoheteroarene π-linkers. Furthermore, isomerization stabilization energy calculations and noncovalent interaction analysis reveal that the variations in energy-storage densities and times between the azole-based and dithienylethene switches stem from differences in aromaticities of the diaryl core and π-linker, as well as changes in noncovalent interactions. Notably, we demonstrate that the relative populations of photoreactive anti-parallel and non-photoreactive parallel conformers of the ring-open form of these switches are governed by weak intramolecular C···C interactions between the two aryl rings. These findings highlight the importance of optimizing such interactions to enhance energy-storage efficiencies in MOST systems.
{"title":"Azole-Based Diarylethenes Containing Benzoheteroarene π-Linkers for Solar Thermal Energy Storage: Influence of Aromaticity and Noncovalent Interactions","authors":"Thillaiarasi Sukumar, Mahesh Kumar Ravva and Baswanth Oruganti*, ","doi":"10.1021/acs.joc.4c0301110.1021/acs.joc.4c03011","DOIUrl":"https://doi.org/10.1021/acs.joc.4c03011https://doi.org/10.1021/acs.joc.4c03011","url":null,"abstract":"<p >Diarylethene photoswitches featuring azole-based diaryl units combined with benzoheteroarene π-linkers have gained significant research interest in recent years due to their potential to achieve higher photocyclization efficiencies compared to conventional dithienylethene switches. In this work, we investigate the suitability of these photoswitches for molecular solar thermal energy storage (MOST) applications through computational modeling of their electrocyclization and cycloreversion reactions. Our calculations demonstrate that it is possible to achieve simultaneously both large energy-storage densities (0.29–0.35 MJ kg<sup>–1</sup>) and prolonged energy-storage times (half-lives of up to 124 days) under ambient conditions in dithiazolyl and dioxazolyl switches containing six distinct benzoheteroarene π-linkers. Furthermore, isomerization stabilization energy calculations and noncovalent interaction analysis reveal that the variations in energy-storage densities and times between the azole-based and dithienylethene switches stem from differences in aromaticities of the diaryl core and π-linker, as well as changes in noncovalent interactions. Notably, we demonstrate that the relative populations of photoreactive anti-parallel and non-photoreactive parallel conformers of the ring-open form of these switches are governed by weak intramolecular C···C interactions between the two aryl rings. These findings highlight the importance of optimizing such interactions to enhance energy-storage efficiencies in MOST systems.</p>","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"90 7","pages":"2770–2782 2770–2782"},"PeriodicalIF":3.3,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143452592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Amit Kumar, Gaddam Mahesh, Jagadeesh Babu Nanubolu, Gangarajula Sudhakar
We intended to realize aryl vinyl oxetane as a 4π-electrocyclization precursor to access indene ethanol. Interestingly, we found that the readily accessible aryl vinyl 1,3-diol, an intermediate en route to the synthesis of oxetane, is an equally potential precursor for the anticipated cyclization. Moreover, aryl vinyl 1,3-diol/oxetane and indene ethanol readily reacted with the subsequently added (het)aromatic aldehydes, providing various indene oxepines/acetaldehydes. Additionally, indenyl aldehyde served as a synthetic handle for FGI, further expanding this protocol’s scope.
{"title":"Electrocyclization of Arylvinyl Oxetane/1,3-Diol to Substituted Indenyl Acetaldehyde via Indene–Ethanol, Oxepine, and a 1,6-Hydride Shift","authors":"Amit Kumar, Gaddam Mahesh, Jagadeesh Babu Nanubolu, Gangarajula Sudhakar","doi":"10.1021/acs.joc.4c03126","DOIUrl":"https://doi.org/10.1021/acs.joc.4c03126","url":null,"abstract":"We intended to realize aryl vinyl oxetane as a 4π-electrocyclization precursor to access indene ethanol. Interestingly, we found that the readily accessible aryl vinyl 1,3-diol, an intermediate en route to the synthesis of oxetane, is an equally potential precursor for the anticipated cyclization. Moreover, aryl vinyl 1,3-diol/oxetane and indene ethanol readily reacted with the subsequently added (het)aromatic aldehydes, providing various indene oxepines/acetaldehydes. Additionally, indenyl aldehyde served as a synthetic handle for FGI, further expanding this protocol’s scope.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"47 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143393795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11DOI: 10.1021/acs.joc.4c0257410.1021/acs.joc.4c02574
Stephanie Felten, Cyndi Qixin He* and Marion H. Emmert*,
We report a general C–H aminoalkylation of 5-membered heterocycles through a combined machine learning/experimental workflow. Our work describes previously unknown C–H functionalization reactivity and creates a predictive machine learning (ML) model through iterative refinement over 6 rounds of active learning. The initial model established with 1,3-azoles predicts the reactivities of N-aryl indazoles, 1,2,4-triazolopyrazines, 1,2,3-thiadiazoles, and 1,3,4-oxadiazoles, while other substrate classes (e.g., pyrazoles and 1,2,4-triazoles) are not predicted well. The final model includes the reactivities of additional heterocyclic scaffolds in the training data, which results in high predictive accuracy across all of the tested cores. The high prediction performance is shown both within the training set via cross-validation (CV R2 = 0.81) and when predicting unseen substrates of diverse molecular weight and structure (Test R2 = 0.95). The concept of feature engineering is discussed, and we benchmark mechanistically related DFT-based features that are more time-intensive and laborious in comparison with molecular descriptors and fingerprints. Importantly, this work establishes novel reactivity for heterocycles for which C–H functionalization methods are underdeveloped. Since such heterocycles are key motifs in drug discovery and development, we expect this work to be of significant use to the synthetic and synthesis-oriented ML communities.
{"title":"C–H Aminoalkylation of 5-Membered Heterocycles: Influence of Descriptors, Data Set Size, and Data Quality on the Predictiveness of Machine Learning Models and Expansion of the Substrate Space Beyond 1,3-Azoles","authors":"Stephanie Felten, Cyndi Qixin He* and Marion H. Emmert*, ","doi":"10.1021/acs.joc.4c0257410.1021/acs.joc.4c02574","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02574https://doi.org/10.1021/acs.joc.4c02574","url":null,"abstract":"<p >We report a general C–H aminoalkylation of 5-membered heterocycles through a combined machine learning/experimental workflow. Our work describes previously unknown C–H functionalization reactivity and creates a predictive machine learning (ML) model through iterative refinement over 6 rounds of active learning. The initial model established with 1,3-azoles predicts the reactivities of <i>N</i>-aryl indazoles, 1,2,4-triazolopyrazines, 1,2,3-thiadiazoles, and 1,3,4-oxadiazoles, while other substrate classes (e.g., pyrazoles and 1,2,4-triazoles) are not predicted well. The final model includes the reactivities of additional heterocyclic scaffolds in the training data, which results in high predictive accuracy across all of the tested cores. The high prediction performance is shown both within the training set via cross-validation (CV <i>R</i><sup>2</sup> = 0.81) and when predicting unseen substrates of diverse molecular weight and structure (Test <i>R</i><sup>2</sup> = 0.95). The concept of feature engineering is discussed, and we benchmark mechanistically related DFT-based features that are more time-intensive and laborious in comparison with molecular descriptors and fingerprints. Importantly, this work establishes novel reactivity for heterocycles for which C–H functionalization methods are underdeveloped. Since such heterocycles are key motifs in drug discovery and development, we expect this work to be of significant use to the synthetic and synthesis-oriented ML communities.</p>","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"90 7","pages":"2613–2625 2613–2625"},"PeriodicalIF":3.3,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143452633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11DOI: 10.1021/acs.joc.4c0264510.1021/acs.joc.4c02645
Juhana A. S. Aho, Jere K. Mannisto*, Saku P. M. Mattila, Marleen Hallamaa and Jan Deska*,
Guanidines make up a class of compounds with important applications in catalysis and medicinal chemistry. In this systematic study, we report on the guanylation of aliphatic amines, anilines, (sulfon)amides, ureas, and carbamates by repurposing HATU, a common amide coupling reagent. The products are 2-substituted 1,1,3,3-tetramethylguanidines (TMGs), a group of sterically hindered superbases. The reaction of a guanidinium salt with aliphatic amines has been regarded as an unwanted side-reaction in amide coupling, yet the exact mechanistic details have been unclear. Our mechanistic investigation shows that the guanylation is highly dependent on the nature of the nitrogen nucleophile. Our findings were applied on two fronts: minimizing guanylation in competing amide coupling reactions as well as maximizing guanylation in a simple one-step synthesis of a broad variety of 2-substituted TMGs, including the late-stage functionalization of pharmaceuticals.
{"title":"Guanidium Unmasked: Repurposing Common Amide Coupling Reagents for the Synthesis of Pentasubstituted Guanidine Bases","authors":"Juhana A. S. Aho, Jere K. Mannisto*, Saku P. M. Mattila, Marleen Hallamaa and Jan Deska*, ","doi":"10.1021/acs.joc.4c0264510.1021/acs.joc.4c02645","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02645https://doi.org/10.1021/acs.joc.4c02645","url":null,"abstract":"<p >Guanidines make up a class of compounds with important applications in catalysis and medicinal chemistry. In this systematic study, we report on the guanylation of aliphatic amines, anilines, (sulfon)amides, ureas, and carbamates by repurposing HATU, a common amide coupling reagent. The products are 2-substituted 1,1,3,3-tetramethylguanidines (TMGs), a group of sterically hindered superbases. The reaction of a guanidinium salt with aliphatic amines has been regarded as an unwanted side-reaction in amide coupling, yet the exact mechanistic details have been unclear. Our mechanistic investigation shows that the guanylation is highly dependent on the nature of the nitrogen nucleophile. Our findings were applied on two fronts: minimizing guanylation in competing amide coupling reactions as well as maximizing guanylation in a simple one-step synthesis of a broad variety of 2-substituted TMGs, including the late-stage functionalization of pharmaceuticals.</p>","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"90 7","pages":"2636–2643 2636–2643"},"PeriodicalIF":3.3,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.joc.4c02645","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143452634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Takuya Okada, Kenta Eguchi, Fumiaki Hasegawa, Mir Mohd Ikhlaq, Takahiro Yoshikawa, Naoki Toyooka
We have succeeded in constructing a trans-2,6-disubstituted piperidine (trans-2,6-DP) skeleton by treatment of allylsilane derivative 2 with TMSOTf. Our designed trans-2,6-DP 1 has oxygen functional groups at the 2- and 6-positions and an exo-methylene moiety at the 4-position and is expected to be applied not only to the synthesis of various natural products but also as an excellent chiral building block with pseudo-symmetry. To demonstrate the versatility of 1, the total synthesis of (−)-myrtin and trans-piperidine-type poison-frog alkaloid 213A and 213B was accomplished.
{"title":"Construction of trans-2,6-Disubstituted Piperidine Skeleton and Its Application to the Total Synthesis of (−)-Myrtine and trans-Piperidine-Type Poison-Frog Alkaloids","authors":"Takuya Okada, Kenta Eguchi, Fumiaki Hasegawa, Mir Mohd Ikhlaq, Takahiro Yoshikawa, Naoki Toyooka","doi":"10.1021/acs.joc.4c02976","DOIUrl":"https://doi.org/10.1021/acs.joc.4c02976","url":null,"abstract":"We have succeeded in constructing a <i>trans</i>-2,6-<u>d</u>isubstituted <u>p</u>iperidine (<i>trans-2</i>,6-DP) skeleton by treatment of allylsilane derivative <b>2</b> with TMSOTf. Our designed <i>trans-2</i>,6-DP <b>1</b> has oxygen functional groups at the 2- and 6-positions and an <i>exo</i>-methylene moiety at the 4-position and is expected to be applied not only to the synthesis of various natural products but also as an excellent chiral building block with <i>pseudo</i>-symmetry. To demonstrate the versatility of <b>1</b>, the total synthesis of (−)-myrtin and <i>trans</i>-piperidine-type poison-frog alkaloid <b>213A</b> and <b>213B</b> was accomplished.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"41 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143375739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}