Pub Date : 2024-11-13DOI: 10.1021/acs.jpca.4c05458
T J Herman, R Ravi, M S Schuurman, N J DeYonker, R W Field, L M Ziurys
The millimeter/submillimeter spectrum of magnesium chloride (MgCl) has been observed in two new electronic excited states, (3)2Σ+ and (4)2Σ+, using direct absorption methods. The molecule was synthesized in a mixture of Cl2, argon, and magnesium vapor. For the (3)2Σ+ state, multiple rotational transitions were measured in the v = 0 level for all six isotopologues (24Mg35Cl, 24Mg37Cl, 25Mg35Cl, 25Mg37Cl, 26Mg35Cl, and 26Mg37Cl), as well as up to v = 13 for 24Mg35Cl. For the (4)2Σ+ state, less intense spectra were recorded for 24Mg35Cl (v = 0-2). Equilibrium rotational parameters were determined for both states for 24Mg35Cl, as well as rotational constants and 25Mg hyperfine parameters for the other isotopologues. A perturbation was observed between rotational levels of the two states due to an avoided crossing. Computations were also carried out at the CASPT2 and MRCISD+Q levels, and the resulting bond lengths for (3)2Σ+ and (4)2Σ+ states agree well with the experimental values of re = 2.536 and 2.361 Å. The computations show that the (3)2Σ+ state has a double-well potential; however, the state behaves as a single well with unperturbed vibrational levels up to v = 13 due to nonadiabatic interactions with the (4)2Σ+ state.
利用直接吸收法观测到了氯化镁(MgCl)在两个新的电子激发态 (3)2Σ+ 和 (4)2Σ+ 中的毫米/亚毫米波谱。该分子是在 Cl2、氩气和镁蒸汽的混合物中合成的。对于 (3)2Σ+ 状态,在 v = 0 水平测量到了所有六种同位素(24Mg35Cl、24Mg37Cl、25Mg35Cl、25Mg37Cl、26Mg35Cl 和 26Mg37Cl)的多个旋转转变,以及 24Mg35Cl 的高达 v = 13 的旋转转变。对于 (4)2Σ+ 状态,24Mg35Cl(v = 0-2)的光谱强度较低。测定了 24Mg35Cl 两种状态的平衡旋转参数,以及其他同位素的旋转常数和 25Mg 超细参数。由于避免了交叉,在这两种状态的旋转水平之间观察到了扰动。计算还在 CASPT2 和 MRCISD+Q 水平上进行,得出的 (3)2Σ+ 和 (4)2Σ+ 状态的键长与实验值 re = 2.536 和 2.361 Å 非常吻合。计算结果表明,(3)2Σ+ 状态具有双阱势能;然而,由于与 (4)2Σ+ 状态的非绝热相互作用,该状态表现为单阱,其未受扰动的振动水平可达 v = 13。
{"title":"Probing the Electronic Manifold of MgCl with Millimeter-Wave Spectroscopy and Theory: (3)<sup>2</sup>Σ<sup>+</sup> and (4)<sup>2</sup>Σ<sup>+</sup> States.","authors":"T J Herman, R Ravi, M S Schuurman, N J DeYonker, R W Field, L M Ziurys","doi":"10.1021/acs.jpca.4c05458","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c05458","url":null,"abstract":"<p><p>The millimeter/submillimeter spectrum of magnesium chloride (MgCl) has been observed in two new electronic excited states, (3)<sup>2</sup>Σ<sup>+</sup> and (4)<sup>2</sup>Σ<sup>+</sup>, using direct absorption methods. The molecule was synthesized in a mixture of Cl<sub>2</sub>, argon, and magnesium vapor. For the (3)<sup>2</sup>Σ<sup>+</sup> state, multiple rotational transitions were measured in the <i>v</i> = 0 level for all six isotopologues (<sup>24</sup>Mg<sup>35</sup>Cl, <sup>24</sup>Mg<sup>37</sup>Cl, <sup>25</sup>Mg<sup>35</sup>Cl, <sup>25</sup>Mg<sup>37</sup>Cl, <sup>26</sup>Mg<sup>35</sup>Cl, and <sup>26</sup>Mg<sup>37</sup>Cl), as well as up to <i>v</i> = 13 for <sup>24</sup>Mg<sup>35</sup>Cl. For the (4)<sup>2</sup>Σ<sup>+</sup> state, less intense spectra were recorded for <sup>24</sup>Mg<sup>35</sup>Cl (<i>v</i> = 0-2). Equilibrium rotational parameters were determined for both states for <sup>24</sup>Mg<sup>35</sup>Cl, as well as rotational constants and <sup>25</sup>Mg hyperfine parameters for the other isotopologues. A perturbation was observed between rotational levels of the two states due to an avoided crossing. Computations were also carried out at the CASPT2 and MRCISD+Q levels, and the resulting bond lengths for (3)<sup>2</sup>Σ<sup>+</sup> and (4)<sup>2</sup>Σ<sup>+</sup> states agree well with the experimental values of <i>r</i><sub>e</sub> = 2.536 and 2.361 Å. The computations show that the (3)<sup>2</sup>Σ<sup>+</sup> state has a double-well potential; however, the state behaves as a single well with unperturbed vibrational levels up to <i>v</i> = 13 due to nonadiabatic interactions with the (4)<sup>2</sup>Σ<sup>+</sup> state.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-13DOI: 10.1021/acs.jpca.4c06673
Andreas Erbs Hillers-Bendtsen, Theo Juncker von Buchwald, Magnus Bukhave Johansen, Rasmine Maria Hansen Knudsen, Poul Jørgensen, Kurt V Mikkelsen
The development of accurate and fast computational procedures for the ab initio calculation of X-ray spectroscopies is paramount to facilitate theoretical analysis of modern X-ray experiments on molecules. Herein, we present the extension of Cluster Perturbation theory to comprehend the calculation of core excited states and core ionization potentials using the core-valence separation approximation, which has seen widespread success for various quantum chemistry methods. We derive the theoretical framework for introducing core-valence separation into Cluster Perturbation series for excitation energies and display the performance of the methodology in S(D) orbital excitation spaces. The obtained core excitation energies on a test set of medium sized organic molecules show that carbon, nitrogen, and oxygen K-edge excitation energies can be determined with errors below 2 eV relative to the CCSD reference results using the developed CPS(D) excitation energy models which can be used for systems way beyond the reach of conventional CCSD.
为促进现代分子 X 射线实验的理论分析,开发精确、快速的 X 射线光谱非初始计算程序至关重要。在本文中,我们介绍了簇扰动理论的扩展,以理解使用核价分离近似计算核激发态和核电离势的计算。我们推导了将核价分离引入簇扰动激发能系列的理论框架,并展示了该方法在 S(D)轨道激发空间中的性能。在一组中等大小的有机分子测试中获得的核激发能表明,使用所开发的 CPS(D) 激发能模型,可以确定碳、氮和氧 K 边激发能,与 CCSD 参考结果相比,误差低于 2 eV。
{"title":"Cluster Perturbation Theory for Core Excited States and Core Ionization Potentials Using Core-Valence Separation.","authors":"Andreas Erbs Hillers-Bendtsen, Theo Juncker von Buchwald, Magnus Bukhave Johansen, Rasmine Maria Hansen Knudsen, Poul Jørgensen, Kurt V Mikkelsen","doi":"10.1021/acs.jpca.4c06673","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c06673","url":null,"abstract":"<p><p>The development of accurate and fast computational procedures for the <i>ab initio</i> calculation of X-ray spectroscopies is paramount to facilitate theoretical analysis of modern X-ray experiments on molecules. Herein, we present the extension of Cluster Perturbation theory to comprehend the calculation of core excited states and core ionization potentials using the core-valence separation approximation, which has seen widespread success for various quantum chemistry methods. We derive the theoretical framework for introducing core-valence separation into Cluster Perturbation series for excitation energies and display the performance of the methodology in S(D) orbital excitation spaces. The obtained core excitation energies on a test set of medium sized organic molecules show that carbon, nitrogen, and oxygen K-edge excitation energies can be determined with errors below 2 eV relative to the CCSD reference results using the developed CPS(D) excitation energy models which can be used for systems way beyond the reach of conventional CCSD.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-13DOI: 10.1021/acs.jpca.4c05819
Alexander Waigum, Murat Ertürk, Andreas Köhn
The internally contracted multireference coupled-cluster method with single, double and perturbative triple excitations, icMRCCSD(T), was tested for its performance in the context of computational high-accuracy thermochemistry. The results were gauged against the standard single-reference coupled-cluster hierarchy with up to 5-fold excitations. The test set comprised of a selection of first-row dinuclear compounds and the three 3d-transition metal compounds MnH, FeH, and CoH. The results revealed two problems with the current formulation of icMRCCSD(T). First, the choice of the Dyall Hamiltonian as the zeroth-order Hamiltonian, which leads to a biased description of the different orbital subspaces and particularly poor results for the atomic correlation energies, and second, the tendency to overestimate the perturbative correction for triply excited clusters, in particular in the presence of open shells and correspondingly low orbital-energy gaps. The two problems could be solved by resorting to the effective Fock operator as zeroth-order Hamiltonian and by adopting a modified amplitude equation that includes terms quadratic in the pair clusters. A similar modification was recently proposed by Masios et al. (Phys. Rev. Lett.2023, 131, 186401) in the context of applying single-reference coupled-cluster theory to systems with small or vanishing band gaps and we chose the acronym '(cT*) correction' in analogy to that work. In contrast to the work of Masios et al., additional terms including single excitation clusters were omitted, as these again lead to an overestimation of correlation effects in more difficult cases. We also tested another alternative for the zeroth-order Hamiltonian and additional higher-order corrections for the correlation energy. These extensions did not significantly improve the results and were also computationally more demanding. The improved icMRCCSD(cT*)F method yields very accurate results with errors, relative to accurate benchmarks, better than 2 kJ/mol for total energies and atomization energies for the entire set of examples considered in this work.
{"title":"Accurate Thermochemistry with Multireference Methods: A Stress Test for Internally Contracted Multireference Coupled-Cluster Theory.","authors":"Alexander Waigum, Murat Ertürk, Andreas Köhn","doi":"10.1021/acs.jpca.4c05819","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c05819","url":null,"abstract":"<p><p>The internally contracted multireference coupled-cluster method with single, double and perturbative triple excitations, icMRCCSD(T), was tested for its performance in the context of computational high-accuracy thermochemistry. The results were gauged against the standard single-reference coupled-cluster hierarchy with up to 5-fold excitations. The test set comprised of a selection of first-row dinuclear compounds and the three 3d-transition metal compounds MnH, FeH, and CoH. The results revealed two problems with the current formulation of icMRCCSD(T). First, the choice of the Dyall Hamiltonian as the zeroth-order Hamiltonian, which leads to a biased description of the different orbital subspaces and particularly poor results for the atomic correlation energies, and second, the tendency to overestimate the perturbative correction for triply excited clusters, in particular in the presence of open shells and correspondingly low orbital-energy gaps. The two problems could be solved by resorting to the effective Fock operator as zeroth-order Hamiltonian and by adopting a modified amplitude equation that includes terms quadratic in the pair clusters. A similar modification was recently proposed by Masios et al. (<i>Phys. Rev. Lett.</i> <b>2023</b>, <i>131</i>, 186401) in the context of applying single-reference coupled-cluster theory to systems with small or vanishing band gaps and we chose the acronym '(cT*) correction' in analogy to that work. In contrast to the work of Masios et al., additional terms including single excitation clusters were omitted, as these again lead to an overestimation of correlation effects in more difficult cases. We also tested another alternative for the zeroth-order Hamiltonian and additional higher-order corrections for the correlation energy. These extensions did not significantly improve the results and were also computationally more demanding. The improved icMRCCSD(cT*)<sub>F</sub> method yields very accurate results with errors, relative to accurate benchmarks, better than 2 kJ/mol for total energies and atomization energies for the entire set of examples considered in this work.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report a high-resolution crossed molecular beam experiment investigating the reaction dynamics of the F + CH4 → HF + CH3 reaction across a broad range of collision energies (3.1-13.8 kcal/mol). By using time-sliced velocity map imaging within the crossed molecular beam apparatus, we obtain correlated angular distributions and branching ratios for various product pairs (CH3(ν), HF(ν')). The resolved reactive rainbow-like features that display a distinct bulge in the angular distribution in different channels reveal the formation of vibrationally ground and excited states of the methyl radical accompanied by different rovibrationally excited HF products. These findings suggest distinct reaction dynamics for channels leading to vibrationally excited methyl radicals compared to those forming ground-state methyl radicals.
{"title":"Vibrational State-Resolved Differential Cross Sections of the F + CH<sub>4</sub> → HF + CH<sub>3</sub> Reaction at the Collision Energies of 3.1-13.8 kcal/mol.","authors":"Yiyang Shu, Zhi Gao, Zhibing Lu, Shihao Li, Fuyan Wu, Yunfan Zhao, Chang Luo, Daofu Yuan, Xingan Wang, Xueming Yang","doi":"10.1021/acs.jpca.4c06570","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c06570","url":null,"abstract":"<p><p>We report a high-resolution crossed molecular beam experiment investigating the reaction dynamics of the F + CH<sub>4</sub> → HF + CH<sub>3</sub> reaction across a broad range of collision energies (3.1-13.8 kcal/mol). By using time-sliced velocity map imaging within the crossed molecular beam apparatus, we obtain correlated angular distributions and branching ratios for various product pairs (CH<sub>3</sub>(ν), HF(ν')). The resolved reactive rainbow-like features that display a distinct bulge in the angular distribution in different channels reveal the formation of vibrationally ground and excited states of the methyl radical accompanied by different rovibrationally excited HF products. These findings suggest distinct reaction dynamics for channels leading to vibrationally excited methyl radicals compared to those forming ground-state methyl radicals.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612830","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Halogenated volatile organic compounds (HVOCs) pose significant bioaccumulative and toxicological risks, necessitating effective strategies for their removal. Here, we show, through a computational study employing density functional theory and coupled cluster methods, the detailed mechanism and kinetic properties of Cl-initiated degradation reactions of 2-chloropropane (2-CP, (CH3)2CHCl) and 2-methylpropanoyl halide ((CH3)2CHCOX, X = Cl, Br, F). The reaction rate constants of all the channels were calculated by the canonical variational transition state theory (CVT) with the correction of the small curvature tunneling effect (SCT) at 200-1000 K. The subsequent transformation pathways of the major radical products of (CH3)2CHCl and (CH3)2CHCOCl in the presence of O2, NO, and HO2 radical were investigated. The results elucidate the reaction pathways and rate constants, which are in excellent agreement with the experimental data at 296 K. We further explore the atmospheric implications of these reactions by assessing the atmospheric lifetime (τ) and ozone depletion potential (ODP). Additionally, we delve into the aquatic toxicity and bioaccumulation potential of the reactants and their transformation products. This study not only advances our knowledge of the atmospheric fate of halogenated hydrocarbons but also underscores the importance of considering the environmental and toxicological impacts in the development of HVOC mitigation strategies.
{"title":"Quantum Chemistry Study on Cl-Initiated Reactions of 2-Chloropropane and 2-Methylpropanoyl Halogen (Cl, Br, F): Mechanism, Kinetics, and Atmospheric Implications.","authors":"Wan-Ying Yu, Tai-Xing Chi, Shuang Ni, Xiang-Huan Liu, Ting-Ting Meng, Xiao-Ming Song, Ke Zhang, Yi-Chen Wang, Feng-Yang Bai, Zhen Zhao","doi":"10.1021/acs.jpca.4c06130","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c06130","url":null,"abstract":"<p><p>Halogenated volatile organic compounds (HVOCs) pose significant bioaccumulative and toxicological risks, necessitating effective strategies for their removal. Here, we show, through a computational study employing density functional theory and coupled cluster methods, the detailed mechanism and kinetic properties of Cl-initiated degradation reactions of 2-chloropropane (2-CP, (CH<sub>3</sub>)<sub>2</sub>CHCl) and 2-methylpropanoyl halide ((CH<sub>3</sub>)<sub>2</sub>CHCOX, X = Cl, Br, F). The reaction rate constants of all the channels were calculated by the canonical variational transition state theory (CVT) with the correction of the small curvature tunneling effect (SCT) at 200-1000 K. The subsequent transformation pathways of the major radical products of (CH<sub>3</sub>)<sub>2</sub>CHCl and (CH<sub>3</sub>)<sub>2</sub>CHCOCl in the presence of O<sub>2</sub>, NO, and HO<sub>2</sub> radical were investigated. The results elucidate the reaction pathways and rate constants, which are in excellent agreement with the experimental data at 296 K. We further explore the atmospheric implications of these reactions by assessing the atmospheric lifetime (τ) and ozone depletion potential (ODP). Additionally, we delve into the aquatic toxicity and bioaccumulation potential of the reactants and their transformation products. This study not only advances our knowledge of the atmospheric fate of halogenated hydrocarbons but also underscores the importance of considering the environmental and toxicological impacts in the development of HVOC mitigation strategies.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Machine learning (ML) potentials such as the Gaussian approximation potential (GAP) have demonstrated impressive capabilities in mapping structure to properties across diverse systems. Here, we introduce a GAP model for low-dimensional Ni nanoclusters and demonstrate its flexibility and effectiveness in capturing the energetics, structural diversity, and thermodynamic properties of Ni nanoclusters across a broad size range. Through a systematic approach encompassing model development, validation, and application, we evaluate the model's efficacy in representing energetics and configurational features in low-dimensional regimes while also examining its extrapolative nature to vastly different spatiotemporal regimes. Our analysis and discussion shed light on the data quality required to effectively train such models. Trajectories from large-scale MD simulations using the GAP model analyzed with data-driven models like graph neural networks reveal intriguing insights into the size-dependent phase behavior and thermomechanical stability characteristics of porous Ni nanoparticles. Overall, our work underscores the potential of ML models, which coupled with data-driven approaches serve as versatile tools for studying low-dimensional systems and complex material dynamics.
机器学习(ML)势(如高斯近似势(GAP))在映射不同系统的结构和性质方面表现出了令人印象深刻的能力。在此,我们介绍了低维镍纳米团簇的 GAP 模型,并展示了该模型在捕捉镍纳米团簇在广泛尺寸范围内的能量、结构多样性和热力学性质方面的灵活性和有效性。通过包括模型开发、验证和应用在内的系统方法,我们评估了该模型在表示低维环境中的能量和构型特征方面的功效,同时还检验了该模型对截然不同的时空环境的外推性质。我们的分析和讨论揭示了有效训练此类模型所需的数据质量。使用图神经网络等数据驱动模型分析 GAP 模型的大规模 MD 模拟轨迹,揭示了多孔镍纳米粒子随尺寸变化的相行为和热力学稳定性特征。总之,我们的工作凸显了 ML 模型的潜力,它与数据驱动方法相结合,可作为研究低维系统和复杂材料动力学的多功能工具。
{"title":"Development of a Machine Learning Potential to Study the Structure and Thermodynamics of Nickel Nanoclusters.","authors":"Suvo Banik, Partha Sarathi Dutta, Sukriti Manna, Subramanian Krs Sankaranarayanan","doi":"10.1021/acs.jpca.4c04048","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c04048","url":null,"abstract":"<p><p>Machine learning (ML) potentials such as the Gaussian approximation potential (GAP) have demonstrated impressive capabilities in mapping structure to properties across diverse systems. Here, we introduce a GAP model for low-dimensional Ni nanoclusters and demonstrate its flexibility and effectiveness in capturing the energetics, structural diversity, and thermodynamic properties of Ni nanoclusters across a broad size range. Through a systematic approach encompassing model development, validation, and application, we evaluate the model's efficacy in representing energetics and configurational features in low-dimensional regimes while also examining its extrapolative nature to vastly different spatiotemporal regimes. Our analysis and discussion shed light on the data quality required to effectively train such models. Trajectories from large-scale MD simulations using the GAP model analyzed with data-driven models like graph neural networks reveal intriguing insights into the size-dependent phase behavior and thermomechanical stability characteristics of porous Ni nanoparticles. Overall, our work underscores the potential of ML models, which coupled with data-driven approaches serve as versatile tools for studying low-dimensional systems and complex material dynamics.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-13DOI: 10.1021/acs.jpca.4c05628
Bruno Credidio, Stephan Thürmer, Dominik Stemer, Michele Pugini, Florian Trinter, Jakub Vokrouhlický, Petr Slavíček, Bernd Winter
Liquid-jet photoelectron spectroscopy (LJ-PES) and electronic-structure theory were employed to investigate the chemical and structural properties of the amino acid l-proline in aqueous solution for its three ionized states (protonated, zwitterionic, and deprotonated). This is the first PES study of this amino acid in its biologically relevant environment. Proline's structure in the aqueous phase under neutral conditions is zwitterionic, distinctly different from the nonionic neutral form in the gas phase. By analyzing the carbon 1s and nitrogen 1s core levels as well as the valence spectra of aqueous-phase proline, we found that the electronic structure is dominated by the protonation state of each constituent molecular site (the carboxyl and amine groups) with small yet noticeable interference across the molecule. The site-specific nature of the core-level spectra enables the probing of individual molecular constituents. The valence photoelectron spectra are more difficult to interpret because of the overlapping signals of proline with the solvent and pH-adjusting agents (HCl and NaOH). Yet, we are able to reveal subtle effects of specific (hydrogen-bonding) interaction with the solvent on the electronic structure. We also demonstrate that the relevant conformational space is much smaller for aqueous-phase proline than for its gas-phase analogue. This study suggests that caution must be taken when comparing photoelectron spectra for gaseous- and aqueous-phase molecules, particularly if those molecules are readily protonated/deprotonated in solution.
{"title":"From Gas to Solution: The Changing Neutral Structure of Proline upon Solvation.","authors":"Bruno Credidio, Stephan Thürmer, Dominik Stemer, Michele Pugini, Florian Trinter, Jakub Vokrouhlický, Petr Slavíček, Bernd Winter","doi":"10.1021/acs.jpca.4c05628","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c05628","url":null,"abstract":"<p><p>Liquid-jet photoelectron spectroscopy (LJ-PES) and electronic-structure theory were employed to investigate the chemical and structural properties of the amino acid l-proline in aqueous solution for its three ionized states (protonated, zwitterionic, and deprotonated). This is the first PES study of this amino acid in its biologically relevant environment. Proline's structure in the aqueous phase under neutral conditions is zwitterionic, distinctly different from the nonionic neutral form in the gas phase. By analyzing the carbon 1s and nitrogen 1s core levels as well as the valence spectra of aqueous-phase proline, we found that the electronic structure is dominated by the protonation state of each constituent molecular site (the carboxyl and amine groups) with small yet noticeable interference across the molecule. The site-specific nature of the core-level spectra enables the probing of individual molecular constituents. The valence photoelectron spectra are more difficult to interpret because of the overlapping signals of proline with the solvent and pH-adjusting agents (HCl and NaOH). Yet, we are able to reveal subtle effects of specific (hydrogen-bonding) interaction with the solvent on the electronic structure. We also demonstrate that the relevant conformational space is much smaller for aqueous-phase proline than for its gas-phase analogue. This study suggests that caution must be taken when comparing photoelectron spectra for gaseous- and aqueous-phase molecules, particularly if those molecules are readily protonated/deprotonated in solution.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12DOI: 10.1021/acs.jpca.4c06210
Michael I Jacobs, Madelyn N Johnston, Shahriar Mahmud
Quantitative characterization of the surface of microdroplets is important to understanding and predicting numerous chemical and physical processes, such as cloud droplet formation and accelerated chemistry in microdroplets. However, it is increasingly appreciated that the surface compositions of microdroplets do not necessarily match those of macroscale solution due to their large surface-area-to-volume (SA-V) ratios and confined volumes. In this work, we explore how both droplet size and composition affect the surface composition of microdroplets by measuring the equilibrium surface tensions of levitated microdroplets containing a single surfactant. We measure the critical micelle concentrations (CMCs) for surfactants of various strengths (macroscale CMC values ranging from 0.02 to 10 mM) in microdroplets with radii ranging from 5 to 25 μm. We accurately model the surface tensions of microdroplets using an equilibrium partitioning model that only requires droplet size and adsorption parameters from macroscale measurements as inputs. Our model predicts that surfactants have an "effective CMC" in microdroplets that is always larger in value than the corresponding macroscale CMC. In some instances, the effective CMC of a surfactant in microdroplets is several orders of magnitude larger than both its macroscale CMC and its macroscale solubility limit. We present a simple expression for the effective CMC in microdroplets that depends on both the macroscale CMC of a surfactant and the SA-V ratio of the microdroplet. Ultimately, our experimental results and model can be used broadly to predict microdroplet surface compositions when investigating surface-driven accelerated chemistry in microdroplets or estimating cloud droplet activation.
{"title":"Exploring How the Surface-Area-to-Volume Ratio Influences the Partitioning of Surfactants to the Air-Water Interface in Levitated Microdroplets.","authors":"Michael I Jacobs, Madelyn N Johnston, Shahriar Mahmud","doi":"10.1021/acs.jpca.4c06210","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c06210","url":null,"abstract":"<p><p>Quantitative characterization of the surface of microdroplets is important to understanding and predicting numerous chemical and physical processes, such as cloud droplet formation and accelerated chemistry in microdroplets. However, it is increasingly appreciated that the surface compositions of microdroplets do not necessarily match those of macroscale solution due to their large surface-area-to-volume (SA-V) ratios and confined volumes. In this work, we explore how both droplet size and composition affect the surface composition of microdroplets by measuring the equilibrium surface tensions of levitated microdroplets containing a single surfactant. We measure the critical micelle concentrations (CMCs) for surfactants of various strengths (macroscale CMC values ranging from 0.02 to 10 mM) in microdroplets with radii ranging from 5 to 25 μm. We accurately model the surface tensions of microdroplets using an equilibrium partitioning model that only requires droplet size and adsorption parameters from macroscale measurements as inputs. Our model predicts that surfactants have an \"effective CMC\" in microdroplets that is always larger in value than the corresponding macroscale CMC. In some instances, the effective CMC of a surfactant in microdroplets is several orders of magnitude larger than both its macroscale CMC and its macroscale solubility limit. We present a simple expression for the effective CMC in microdroplets that depends on both the macroscale CMC of a surfactant and the SA-V ratio of the microdroplet. Ultimately, our experimental results and model can be used broadly to predict microdroplet surface compositions when investigating surface-driven accelerated chemistry in microdroplets or estimating cloud droplet activation.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12DOI: 10.1021/acs.jpca.4c05775
Thanh Lam Nguyen, Gregory H Jones, Bryan Changala, Binod Raj Giri, John R Barker, John F Stanton
The thermal unimolecular decay of ethoxy is important in high-temperature combustion environments where the ethoxy radical is a key reactive intermediate. Two dissociation pathways of ethoxy, including the β-C-C scission to yield CH3 + CH2O and the H-elimination to make H + CH3CHO, were characterized using a high-level coupled-cluster-based composite quantum chemical method (mHEAT-345(QΛ)). The former route is found to be dominant while the latter is insignificant, in agreement with previous experimental and theoretical studies. Thermal rate coefficients are calculated for P = 0.001-658 atm (of air) and T = 300-2500 K using semiclassical transition state theory (SCTST) in combination with a pragmatic two-dimensional E,J-resolved master equation (2DME). The effects of tunneling and anharmonicity on the calculated rate constants are also examined. The tunneling factor is found to be inversely dependent on pressure, contrary to previous observations of pressure-dependent tunneling in entrance channels.
乙氧基的单分子热衰变在高温燃烧环境中非常重要,因为乙氧基自由基是一种关键的反应中间体。利用基于高水平耦合簇的复合量子化学方法(mHEAT-345(QΛ))表征了乙氧基的两种解离途径,包括β-C-C 裂解生成 CH3 + CH2O 和 H-消除生成 H + CH3CHO。结果发现前一种途径占主导地位,而后一种途径并不重要,这与之前的实验和理论研究结果一致。在 P = 0.001-658 atm(空气)和 T = 300-2500 K 的条件下,使用半经典过渡态理论(SCTST)结合实用的二维 E、J 分辨主方程(2DME)计算了热速率系数。此外,还考察了隧穿和非谐波对计算速率常数的影响。研究发现隧道因子与压力成反比,这与之前在入口通道中观察到的压力依赖性隧道效应相反。
{"title":"Semiclassical Transition State Theory (SCTST) Rate Coefficients for the Unimolecular Decomposition of the Ethoxy (CH<sub>3</sub>CH<sub>2</sub>O) Radical.","authors":"Thanh Lam Nguyen, Gregory H Jones, Bryan Changala, Binod Raj Giri, John R Barker, John F Stanton","doi":"10.1021/acs.jpca.4c05775","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c05775","url":null,"abstract":"<p><p>The thermal unimolecular decay of ethoxy is important in high-temperature combustion environments where the ethoxy radical is a key reactive intermediate. Two dissociation pathways of ethoxy, including the β-C-C scission to yield CH<sub>3</sub> + CH<sub>2</sub>O and the H-elimination to make H + CH<sub>3</sub>CHO, were characterized using a high-level coupled-cluster-based composite quantum chemical method (mHEAT-345(Q<sub>Λ</sub>)). The former route is found to be dominant while the latter is insignificant, in agreement with previous experimental and theoretical studies. Thermal rate coefficients are calculated for <i>P</i> = 0.001-658 atm (of air) and <i>T</i> = 300-2500 K using semiclassical transition state theory (SCTST) in combination with a pragmatic two-dimensional <i>E</i>,<i>J</i>-resolved master equation (2DME). The effects of tunneling and anharmonicity on the calculated rate constants are also examined. The tunneling factor is found to be inversely dependent on pressure, contrary to previous observations of pressure-dependent tunneling in entrance channels.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-11DOI: 10.1021/acs.jpca.4c04804
Lisset Noriega, Luis Armando González-Ortiz, Filiberto Ortíz-Chi, Alan Quintal, Sandra I Ramírez, Gabriel Merino
2-Methoxyethanol, with a formula C3H8O2, was recently identified in the massive protocluster NGC 6334I. However, its structural isomers, 1,2-propanediol and 1,3-propanediol, remain undetected despite extensive searches in the Sgr B2 region. In this study, we explored the potential energy surface of the C3H8O2 system using CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ calculations, identifying 11 species, with the geminal diols 2,2-propanediol and 1,1-propanediol as the most stable forms. We examined the gas-phase decomposition barrier of these geminal diols and found that 1,1-propanediol is thermodynamically stable at low temperatures (10-150 K). C3H8O2 isomers with energies below 30 kcal/mol are relevant to the ISM, as they have been identified or tentatively detected in irradiation experiments of ice analogs of CO, H2O, and CH3OH.
{"title":"C<sub>3</sub>H<sub>8</sub>O<sub>2</sub> Isomers: Insights into Potential Interstellar Species.","authors":"Lisset Noriega, Luis Armando González-Ortiz, Filiberto Ortíz-Chi, Alan Quintal, Sandra I Ramírez, Gabriel Merino","doi":"10.1021/acs.jpca.4c04804","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c04804","url":null,"abstract":"<p><p>2-Methoxyethanol, with a formula C<sub>3</sub>H<sub>8</sub>O<sub>2,</sub> was recently identified in the massive protocluster NGC 6334I. However, its structural isomers, 1,2-propanediol and 1,3-propanediol, remain undetected despite extensive searches in the Sgr B2 region. In this study, we explored the potential energy surface of the C<sub>3</sub>H<sub>8</sub>O<sub>2</sub> system using CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ calculations, identifying 11 species, with the geminal diols 2,2-propanediol and 1,1-propanediol as the most stable forms. We examined the gas-phase decomposition barrier of these geminal diols and found that 1,1-propanediol is thermodynamically stable at low temperatures (10-150 K). C<sub>3</sub>H<sub>8</sub>O<sub>2</sub> isomers with energies below 30 kcal/mol are relevant to the ISM, as they have been identified or tentatively detected in irradiation experiments of ice analogs of CO, H<sub>2</sub>O, and CH<sub>3</sub>OH.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}