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Nitric Oxide Synthase Inhibition Prevents Cell Proliferation in Glioblastoma 一氧化氮合酶抑制抑制胶质母细胞瘤细胞增殖。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-10-16 DOI: 10.1007/s12031-023-02166-3
Daniel Kruglyakov, Shashank Kumar Ojha, Maryam Kartawy, Manish Kumar Tripathi, Wajeha Hamoudi, Wisam Bazbaz, Igor Khaliulin, Haitham Amal

Glioblastoma multiforme (GBM) is a prevalent and aggressive primary brain tumor, presenting substantial treatment challenges and high relapse rates. GBM is characterized by alterations in molecular signaling and enzyme expression within malignant cells. This tumor exhibits elevated nitric oxide (NO.) levels. NO. is a crucial signaling molecule involved in the regulation of neuronal functions, synaptic transmission, and cell proliferation. It is primarily synthesized from L-arginine by nitric oxide synthase (NOS) enzymes. The increased levels of NO. in GBM stem from dysregulated activity and expression of clinically relevant NOS isoforms, particularly inducible NOS (iNOS) and neuronal NOS (nNOS). Based on this knowledge, we hypothesize that targeted pharmacological intervention with N6-(1-iminoethyl)-L-lysine (L-NIL), an iNOS inhibitor, and 7-Nitroindazole (7-NI), an nNOS inhibitor, may suggest a promising therapeutic strategy for the treatment of GBM. To test our hypothesis, we utilized the U87-MG cell line as an in vitro model of GBM. Our results showed that treatment with L-NIL and 7-NI led to a reduction in NO. levels, NOS activity, and clonogenic proliferation in U87-MG cells. These findings suggest that NO. and NOS enzymes might be prospective therapeutic targets for GBM.

多形性胶质母细胞瘤(GBM)是一种常见的侵袭性原发性脑肿瘤,具有巨大的治疗挑战和高复发率。GBM的特征是恶性细胞内分子信号和酶表达的改变。该肿瘤表现出一氧化氮(NO)水平升高。NO是一种重要的信号分子,参与调节神经元功能、突触传递和细胞增殖。它主要由L-精氨酸通过一氧化氮合酶(NOS)合成。GBM中NO水平的升高源于临床相关NOS亚型,特别是诱导型NOS(iNOS)和神经元型NOS(nNOS)的活性和表达失调。基于这些知识,我们假设iNOS抑制剂N6-(1-亚氨基乙基)-L-赖氨酸(L-NIL)和nNOS抑制剂7-硝基吲唑(7-NI)的靶向药物干预可能为治疗GBM提供了一种有前景的治疗策略。为了验证我们的假设,我们使用U87-MG细胞系作为GBM的体外模型。我们的结果表明,L-NIL和7-NI处理导致U87-MG细胞中NO水平、NOS活性和克隆增殖降低。这些发现表明NO和NOS酶可能是GBM的潜在治疗靶点。
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引用次数: 0
Investigation of LncRNA PVT1 and MiR-21-5p Expression as Promising Novel Biomarkers for Autism Spectrum Disorder LncRNA PVT1和MiR-21-5p表达作为自闭症谱系障碍有前景的新生物标志物的研究。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-10-13 DOI: 10.1007/s12031-023-02161-8
Mingjun Jiang, Guanwen Chen

The characteristics of ncRNA in children with autism spectrum disorder (ASD) were observed to disclose a theoretical basis for further research on molecular markers for early warning of ASD. Children with ASD and normal control children were recruited to collect peripheral blood RNA samples. The concentration of PVT1 and miR-21-5p was quantitatively analyzed by qRT-PCR. Pearson correlation coefficient method was used to evaluate the link between PVT1 level and miR-21-5p level of the children. Receiver operating characteristic (ROC) curves were applied to reckon the predictive value of PVT1, miR-21-5p, and their combination in ASD. The interconnection of PVT1 with miR-21-5p was represented by luciferase reporter assay. The targeted genes of miR-21-5p were predicted. The enrichment and protein interaction analysis of these genes was carried out to find the important core genes and analyze their value in ASD. In the disease group, the level of PVT1 was downregulated, while the content of miR-21-5p was upregulated. The expression level of serum miR-21-5p was negatively correlated with the level of PVT1. Luciferase reporter gene assay documented that PVT1 directly targeted miR-21-5p. ROC curve showed that PVT1, miR-21-5p, and their combination showed clinical value for disease diagnosis. The functional enrichment analysis showed that the targets of miR-21-5p participated in ASD by regulating related functions and pathways. Reduced expression of PVT1 and raised miR-21-5p were good diagnostic markers for ASD, which would provide a basis for effective prevention, early diagnosis, and early intervention of ASD.

观察了自闭症谱系障碍(ASD)儿童ncRNA的特征,为进一步研究ASD早期预警的分子标志物提供了理论依据。ASD儿童和正常对照儿童被招募来收集外周血RNA样本。通过qRT-PCR定量分析PVT1和miR-21-5p的浓度。采用Pearson相关系数法评估儿童PVT1水平和miR-21-5p水平之间的联系。应用受试者操作特征(ROC)曲线来计算PVT1、miR-21-5p及其组合对ASD的预测价值。PVT1与miR-21-5p的相互连接通过荧光素酶报告基因测定来表示。预测了miR-21-5p的靶基因。对这些基因进行了富集和蛋白质相互作用分析,以寻找重要的核心基因并分析其在ASD中的价值。在疾病组中,PVT1的水平下调,而miR-21-5p的含量上调。血清miR-21-5p的表达水平与PVT1水平呈负相关。萤光素酶报告基因分析证明PVT1直接靶向miR-21-5p。ROC曲线显示PVT1、miR-21-5p及其组合对疾病诊断具有临床价值。功能富集分析表明,miR-21-5p的靶点通过调节相关功能和途径参与ASD。PVT1表达减少和miR-21-5p升高是ASD的良好诊断标志物,这将为ASD的有效预防、早期诊断和早期干预提供基础。
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引用次数: 0
A Novel Mutation in the MAP7D3 Gene in Two Siblings with Severe Intellectual Disability and Autistic Traits: Concurrent Assessment of BDNF Functional Polymorphism, X-Inactivation and Oxidative Stress to Explain Disease Severity 两个具有严重智力残疾和自闭症特征的兄弟姐妹MAP7D3基因的一个新突变:BDNF功能多态性、X失活和氧化应激解释疾病严重性的同时评估。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-10-10 DOI: 10.1007/s12031-023-02163-6
Marwa Kharrat, Abir Ben Issa, Abdelaziz Tlili, Olfa Jallouli, Olfa Alila-Fersi, Marwa Maalej, Jihen Chouchen, Yosra Ghouylia, Fatma Kamoun, Chahnez Triki, Faiza Fakhfakh

Intellectual disabilities (ID) and autism spectrum disorders (ASD) are characterized by extreme genetic and phenotypic heterogeneity. However, understanding this heterogeneity is difficult due to the intricate interplay among multiple interconnected genes, epigenetic factors, oxidative stress, and environmental factors. Employing next-generation sequencing (NGS), we revealed the genetic cause of ID and autistic traits in two patients from a consanguineous family followed by segregation analysis. Furthermore, in silico prediction methods and 3D modeling were conducted to predict the effect of the variants. To establish genotype–phenotype correlation, X-chromosome inactivation using Methylation-specific PCR and oxidative stress markers were also investigated. By analyzing the NGS data of the two patients, we identified a novel frameshift mutation c.2174_2177del (p.Thr725MetfsTer2) in the MAP7D3 gene inherited from their mother along with the functional BDNF Val66Met polymorphism inherited from their father. The 3D modeling demonstrated that the p.Thr725MetfsTer2 variant led to the loss of the C-terminal tail of the MAP7D3 protein. This change could destabilize its structure and impact kinesin-1’s binding to microtubules via an allosteric effect. Moreover, the analysis of oxidative stress biomarkers revealed an elevated oxidative stress in the two patients compared to the controls. To the best of our knowledge, this is the first report describing severe ID and autistic traits in familial cases with novel frameshift mutation c.2174_2177del in the MAP7D3 gene co-occurring with the functional polymorphism Val66M in the BDNF gene. Besides, our study underlines the importance of investigating combined genetic variations, X-chromosome inactivation (XCI) patterns, and oxidative stress markers for a better understanding of ID and autism etiology.

智力残疾(ID)和自闭症谱系障碍(ASD)具有极端的遗传和表型异质性。然而,由于多种相互关联的基因、表观遗传因素、氧化应激和环境因素之间错综复杂的相互作用,理解这种异质性是困难的。采用下一代测序(NGS),我们揭示了两名来自近亲家庭的患者ID和自闭症特征的遗传原因,然后进行了分离分析。此外,还进行了计算机预测方法和3D建模来预测变体的影响。为了建立基因型-表型相关性,还研究了使用甲基化特异性PCR和氧化应激标记的X染色体失活。通过分析这两名患者的NGS数据,我们在从其母亲遗传的MAP7D3基因中发现了一个新的移码突变c.2174_2177del(p.Thr725MetfsTer2),以及从其父亲遗传的功能性BDNF Val66Met多态性。3D建模表明p.Thr725MetfsTer2变体导致MAP7D3蛋白C末端尾部的缺失。这种变化可能使其结构不稳定,并通过变构效应影响驱动蛋白-1与微管的结合。此外,对氧化应激生物标志物的分析显示,与对照组相比,两名患者的氧化应激升高。据我们所知,这是第一份描述MAP7D3基因中新的移码突变c.2174_2177del与BDNF基因中的功能多态性Val66M同时发生的家族性病例的严重ID和自闭症特征的报告。此外,我们的研究强调了研究综合遗传变异、X染色体失活(XCI)模式和氧化应激标志物的重要性,以更好地了解ID和自闭症的病因。
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引用次数: 0
Whole-Blood Metabolomics of a Rat Model of Repetitive Concussion 大鼠重复性脑震荡模型的全血代谢组学。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-10-06 DOI: 10.1007/s12031-023-02162-7
Ahmad Raza Khan, Samiya Zehra, Atul Kumar Baranwal, Dinesh Kumar, Raisuddin Ali, Saleem Javed, Kamlesh Bhaisora

Mild traumatic brain injury (mTBI) and repetitive mTBI (RmTBI) are silent epidemics, and so far, there is no objective diagnosis. The severity of the injury is solely based on the Glasgow Coma Score (GCS) scale. Most patients suffer from one or more behavioral abnormalities, such as headache, amnesia, cognitive decline, disturbed sleep pattern, anxiety, depression, and vision abnormalities. Additionally, most neuroimaging modalities are insensitive to capture structural and functional alterations in the brain, leading to inefficient patient management. Metabolomics is one of the established omics technologies to identify metabolic alterations, mostly in biofluids. NMR-based metabolomics provides quantitative metabolic information with non-destructive and minimal sample preparation. We employed whole-blood NMR analysis to identify metabolic markers using a high-field NMR spectrometer (800 MHz). Our approach involves chemical-free sample pretreatment and minimal sample preparation to obtain a robust whole-blood metabolic profile from a rat model of concussion. A single head injury was given to the mTBI group, and three head injuries to the RmTBI group. We found significant alterations in blood metabolites in both mTBI and RmTBI groups compared with the control, such as alanine, branched amino acid (BAA), adenosine diphosphate/adenosine try phosphate (ADP/ATP), creatine, glucose, pyruvate, and glycerphosphocholine (GPC). Choline was significantly altered only in the mTBI group and formate in the RmTBI group compared with the control. These metabolites corroborate previous findings in clinical and preclinical cohorts. Comprehensive whole-blood metabolomics can provide a robust metabolic marker for more accurate diagnosis and treatment intervention for a disease population.

轻度创伤性脑损伤(mTBI)和重复性mTBI(RmTBI)是无声的流行病,到目前为止,还没有客观的诊断。损伤的严重程度仅基于格拉斯哥昏迷评分(GCS)量表。大多数患者患有一种或多种行为异常,如头痛、健忘症、认知能力下降、睡眠模式紊乱、焦虑、抑郁和视力异常。此外,大多数神经成像模式对捕捉大脑的结构和功能变化不敏感,导致患者管理效率低下。代谢组学是一种公认的组学技术,用于识别代谢变化,主要是在生物流体中。基于NMR的代谢组学通过无损和最少的样品制备提供定量代谢信息。我们使用全血NMR分析来使用高场NMR光谱仪(800MHz)鉴定代谢标志物。我们的方法包括无化学物质的样品预处理和最少的样品制备,以从脑震荡大鼠模型中获得稳健的全血代谢谱。mTBI组有一处头部受伤,RmTBI小组有三处头部受伤。我们发现,与对照组相比,mTBI和RmTBI组的血液代谢产物发生了显著变化,如丙氨酸、支链氨基酸(BAA)、二磷酸腺苷/磷酸腺苷(ADP/ATP)、肌酸、葡萄糖、丙酮酸盐和甘油磷酸胆碱(GPC)。与对照组相比,胆碱仅在mTBI组中发生显著改变,甲酸盐在RmTBI组中发生明显改变。这些代谢产物证实了先前在临床和临床前队列中的发现。全面的全血代谢组学可以为疾病人群提供更准确的诊断和治疗干预的强大代谢标志物。
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引用次数: 0
Treadmill Exercise Improves Behavioral and Neurobiological Alterations in Restraint-Stressed Rats 跑步机运动改善约束应激大鼠的行为和神经生物学改变。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-10-04 DOI: 10.1007/s12031-023-02159-2
Zubeyde Ercan, Ozgur Bulmus, Emine Kacar, Ihsan Serhatlioglu, Gokhan Zorlu, Haluk Kelestimur

Stress is a state that is known to impact an organism’s physiological and psychological balance as well as the morphology and functionality of certain brain areas. In the present work, chronic restraint stress (CRS) model rats treated with treadmill exercise were used to examine anomalies associated to emotion and mood as well as molecular changes in the brain. Forty male Sprague-Dawley rats were divided into control, stress, exercise, and stress+exercise groups. CRS were exposed to stress group rats and exercise group underwent a chronic treadmill exercise. Depressive-like behavior was evaluated with the forced swim test (FST) and tail suspension test (TST). For assessing anxiety-like behavior, the light-dark test (LDT) and the open field test (OFT) were used. The Morris water maze test (MWMT) was used for testing memory and learning. Brain’s monoamine level and the expression of genes related to stress were measured. It was discovered that CRS lengthens latency in the MWMT, increases immobility in the FST and TST, decreases time in the light compartment, and causes hypoactivity in the OFT. CRS reduced the dopamine levels in the nucleus accumbens(NAc). Brain-derived neurotrophic factor (BDNF), dopamine receptors, and serotonin receptor (HTR2A) gene expression in the prefrontal cortex, corpus striatum, and hypothalamus were decreased by CRS. Exercise on a treadmill leads to increase NAc’s dopamine and noradrenaline levels and prevented behavioral alterations. Exercise increased the alterations of BDNF expressions in the brain in addition to improving behavior. As a result, CRS-induced behavioral impairments were effectively reversed by chronic treadmill exercise with molecular alterations in the brain.

众所周知,压力是一种影响生物体生理和心理平衡以及某些大脑区域形态和功能的状态。在目前的工作中,使用跑步机运动治疗的慢性约束应激(CRS)模型大鼠来检查与情绪和情绪相关的异常以及大脑中的分子变化。将40只雄性Sprague-Dawley大鼠分为对照组、应激组、运动组和应激+运动组。CRS暴露于应激组大鼠,运动组进行慢性平板运动。采用强迫游泳试验(FST)和尾部悬吊试验(TST)评价抑郁样行为。为了评估焦虑样行为,使用了明暗测试(LDT)和开放场测试(OFT)。Morris水迷宫测试(MWMT)用于测试记忆和学习。测量了大脑的单胺类水平和与压力相关的基因的表达。研究发现,CRS延长了MWMT的潜伏期,增加了FST和TST的不动性,减少了在光室的时间,并导致OFT的低活性。CRS降低伏隔核(NAc)中的多巴胺水平。CRS降低了前额叶皮层、纹状体和下丘脑中的脑源性神经营养因子(BDNF)、多巴胺受体和血清素受体(HTR2A)基因表达。在跑步机上锻炼可以增加NAc的多巴胺和去甲肾上腺素水平,并防止行为改变。运动除了改善行为外,还增加了大脑中BDNF表达的改变。因此,CRS诱导的行为障碍通过大脑分子改变的慢性跑步机运动有效逆转。
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引用次数: 0
Age-Dependent Regulation of Dendritic Spine Density and Protein Expression in Mir324 KO Mice Mir324 KO小鼠树突棘密度和蛋白质表达的年龄依赖性调节。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-09-29 DOI: 10.1007/s12031-023-02157-4
Emma V. Parkins, John M. Burwinkel, Ruvi Ranatunga, Sarah Yaser, Yueh-Chiang Hu, Durgesh Tiwari, Christina Gross

Dendritic spines are small, dynamic protrusions along the dendrite that comprise more than 90% of excitatory connections in the brain, making them essential sites for neuronal communication. These synaptic sites change throughout the process of development, reducing in density and shifting morphology as synapses are refined. One important class of dendritic spine regulators is microRNA (miRNA), small-noncoding RNAs that post-transcriptionally regulate gene expression. Several studies suggest that miRNA-324-5p regulates dendritic spine formation. In addition, we have previously shown that miR-324-5p plays a role in seizure and long-term potentiation, both of which involve dendritic spine changes. In this study, we aimed to characterize the role of miRNA-324-5p in developmental spine regulation by assessing the effect of Mir324 knockout (KO) on dendritic spine density and expression of a subset of dendritic proteins at select developmental time points. We show that miR-324-5p expression is developmentally regulated and peaks at 4 weeks of age. We demonstrate that loss of miR-324-5p expression leads to differential changes in both target protein expression and spine density at different time points during development, disrupting the pattern of spine density changes and leading to a premature loss of dendritic spines in KO mice, which is compensated later. Our findings indicate that miR-324-5p plays a role in synaptic refinement across development. Additionally, our data illustrate the importance of context in the study of miRNA, as regulation by and/or of miRNA can vary dramatically across development and in disease.

树突棘是沿着树突的小而动态的突起,占大脑兴奋性连接的90%以上,是神经元交流的重要部位。这些突触位点在整个发育过程中发生变化,随着突触的细化,密度降低,形态发生变化。一类重要的树突棘调节因子是微小RNA(miRNA),这是一种转录后调节基因表达的小型非编码RNA。一些研究表明,miRNA-324-5p调节树突棘的形成。此外,我们之前已经表明miR-324-5p在癫痫发作和长时程增强中发挥作用,这两种作用都涉及树突棘的变化。在本研究中,我们旨在通过评估Mir324敲除(KO)在选定发育时间点对树突棘密度和树突蛋白亚群表达的影响,来表征miRNA-324-5p在发育棘调节中的作用。我们发现miR-324-5p的表达在发育过程中受到调节,并在4周大时达到峰值。我们证明,miR-324-5p表达的缺失会导致靶蛋白表达和脊柱密度在发育过程中的不同时间点发生差异性变化,破坏脊柱密度变化的模式,并导致KO小鼠树突棘的过早缺失,这在以后得到补偿。我们的研究结果表明,miR-324-5p在整个发育过程中的突触精细化中发挥作用。此外,我们的数据说明了上下文在miRNA研究中的重要性,因为miRNA的调节和/或miRNA的调控在不同的发育和疾病中可能存在显著差异。
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引用次数: 0
Analysis of Fecal Microbiota in Patients with Hypertension Complicated with Ischemic Stroke 高血压并发缺血性脑卒中患者粪便微生物群分析。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-09-26 DOI: 10.1007/s12031-023-02149-4
Yitong Jiang, Chunhua Liu, Yingli Zhang, Mei Ying, Feng Xiao, Miao Chen, Yong Zhang, Xiaowei Zhang

Ischemic stroke is a disease with a very high incidence in the clinic, and hypertension is the most important variable risk factor of ischemic stroke. Studies have shown that intestinal microbes are involved in the occurrence and development of various diseases. This study aims to explore whether intestinal microbes play an important role in the pathogenesis of ischemic stroke in a hypertensive population. In this study, the inpatients in the Department of Neurology and Cardiology of the Second Affiliated Hospital of Shandong First Medical University in April 2021 were selected, including seven patients with hypertension complicated with ischemic stroke and only seven patients with hypertension. After collecting the stool samples of patients, the gene sequence of the samples was detected by 16S rRNA sequencing technology, and the double-ended 2 × 150 bp sequencing was carried out. After sequencing, the results were analyzed by diversity analysis, species difference analysis, species function difference analysis, and other bioinformatics tests. According to the test results, serum proteomics and biochemical blood tests were carried out to verify. There was no significant difference in α diversity and β diversity between hypertension complicated with the cerebral infarction and hypertension groups. LEfSe analysis showed that at the genus level, compared with the hypertension group, Bacteroides, UCG_009, and Eisenbergiella had significantly increased relative abundance. The genera with relatively significantly reduced abundance are Ruminococcus_gnavus_group, Sutterellaceae, Burkholderia, and Prevotella and the LDA score of Prevotella is <  − 4, which indicates that there are significant differences. Compared with the blood biochemical indexes, the results showed that the level of APOA1 in hypertensive patients with ischemic stroke was significantly higher than that in hypertensive patients (p < 0.05), but there was no significant difference in total cholesterol (CHOL), triglyceride (TG), high-density lipoprotein (HDL), low-density lipoprotein (LDL), apolipoprotein B (APOB), and free fatty acid (NEFA). Proteomic analysis showed that there were 89 up-regulated genes and 51 down-regulated genes in the serum of the two groups, and the expression of APOC2 and APOC3 in the cerebral infarction group with hypertension was significantly higher than that in the hypertension group (p < 0.05). The intestinal diversity of patients with hypertension complicated with stroke is similar to that of patients with hypertension, but there are differences in microbiota, among which Prevotella is the most significant. Prevotella could affect lipid metabolism so that APOC2 and APOC3 in the blood are significantly increased, leading to cerebral artery atherosclerosis and, finally, ischemic stroke. This provides a new idea for preventing and treating ischemic stroke in patients with hypert

缺血性脑卒中是临床上发病率极高的疾病,高血压是缺血性脑卒中最重要的可变危险因素。研究表明,肠道微生物参与了各种疾病的发生和发展。本研究旨在探讨肠道微生物是否在高血压人群缺血性中风的发病机制中发挥重要作用。本研究选取山东第一医科大学附属第二医院神经内科和心内科2021年4月的住院患者,其中高血压合并缺血性脑卒中患者7例,高血压患者仅7例。采集患者粪便样本后,通过16S rRNA测序技术检测样本的基因序列,双端2 × 进行了150bp的测序。测序后,通过多样性分析、物种差异分析、物种功能差异分析和其他生物信息学测试对结果进行分析。根据检测结果,进行血清蛋白质组学和血液生化检测进行验证。高血压合并脑梗死组和高血压组间α、β多样性差异无统计学意义。LEfSe分析显示,在属水平上,与高血压组相比,拟杆菌、UCG_009和艾森伯格菌的相对丰度显著增加。丰度相对显著降低的属有Ruminococcus_gnavus_group、Sutterellaceae、Burkholderia和Prevotella,Prevotell的LDA评分为
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引用次数: 0
Structure-function Studies of GABA (A) Receptors and Related computer-aided Studies GABA(A)受体的结构功能研究及相关的计算机辅助研究。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-09-26 DOI: 10.1007/s12031-023-02158-3
Fatin H. Mohamad, Muhamad Arif Mohamad Jamali, Ahmad Tarmizi Che Has

The γ-aminobutyric acid type A receptor (GABA (A) receptor) is a membrane protein activated by the neurotransmitter GABA. Structurally, this major inhibitory neurotransmitter receptor in the human central nervous system is a pentamer that can be built from a selection of 19 subunits consisting of α(1,2,3,4,5 or 6), β (1,2 or 3), γ (1,2 or 3), ρ (1,2 or 3), and δ, π, θ, and ε. This creates several possible pentameric arrangements, which also influence the pharmacological and physiological properties of the receptor. The complexity and heterogeneity of the receptors are further increased by the addition of short and long splice variants in several subunits and the existence of multiple allosteric binding sites and expansive ligands that can bind to the receptors. Therefore, a comprehensive understanding of the structure and function of the receptors is required to gain novel insights into the consequences of receptor dysfunction and subsequent drug development studies. Notably, advancements in computational-aided studies have facilitated the elucidation of residual interactions and exploring energy binding, which may otherwise be challenging to investigate. In this review, we aim to summarize the current understanding of the structure and function of GABA (A) receptors obtained from advancements in computational-aided applications.

γ-氨基丁酸A型受体(GABA(A)受体)是一种由神经递质GABA激活的膜蛋白。从结构上讲,人类中枢神经系统中的这种主要抑制性神经递质受体是一种五聚体,它可以由19个亚基组成,包括α(1,2,3,4,5或6)、β(1,2或3)、γ(1,2,3)、ρ(1,2/3)和δ、π、θ和ε。这产生了几种可能的五聚体排列,这些排列也影响受体的药理学和生理学特性。通过在几个亚基中添加短剪接变体和长剪接变体,以及存在多个变构结合位点和可与受体结合的扩展配体,受体的复杂性和异质性进一步增加。因此,需要全面了解受体的结构和功能,才能对受体功能障碍的后果和随后的药物开发研究有新的见解。值得注意的是,计算辅助研究的进步促进了残余相互作用的阐明和能量结合的探索,否则这可能是一项具有挑战性的研究。在这篇综述中,我们的目的是总结目前对GABA(A)受体结构和功能的理解,这些理解是从计算辅助应用的进展中获得的。
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引用次数: 0
Transcriptomics Meta-Analysis Reveals Phagosome and Innate Immune System Dysfunction as Potential Mechanisms in the Cortex of Alzheimer’s Disease Mouse Strains 转录组学荟萃分析揭示吞噬体和先天免疫系统功能障碍是阿尔茨海默病小鼠品系皮层的潜在机制。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-09-21 DOI: 10.1007/s12031-023-02152-9
Michael Anekson Widjaya, Chia-Hsin Liu, Shin-Da Lee, Wei-Chung Cheng

Immune-related pathways can affect the immune system directly, such as the chemokine signaling pathway, or indirectly, such as the phagosome pathway. Alzheimer’s disease (AD) is reportedly associated with several immune-related pathways. However, exploring its underlying mechanism is challenging in animal studies because AD mouse strains differentially express immune-related pathway characteristics. To overcome this problem, we performed a meta-analysis to identify significant and consistent immune-related AD pathways that are expressed in different AD mouse strains. Next-generation RNA sequencing (RNA-seq) and microarray datasets for the cortex of AD mice from different strains such as APP/PSEN1, APP/PS2, 3xTg, TREM, and 5xFAD were collected from the NCBI GEO database. Each dataset’s quality control and normalization were already processed from each original study source using various methods depending on the high-throughput analysis platform (FastQC, median of ratios, RMA, between array normalization). Datasets were analyzed using DESeq2 for RNA-seq and GEO2R for microarray to identify differentially expressed (DE) genes. Significantly DE genes were meta-analyzed using Stouffer’s method, with significant genes further analyzed for functional enrichment. Ten datasets representing 20 conditions were obtained from the NCBI GEO database, comprising 116 control and 120 AD samples. The DE analysis identified 284 significant DE genes. The meta-analysis identified three significantly enriched immune-related AD pathways: phagosome, the complement and coagulation cascade, and chemokine signaling. Phagosomes-related genes correlated with complement and immune system. Meanwhile, phagosomes and chemokine signaling genes overlapped with B cells receptors pathway genes indicating potential correlation between phagosome, chemokines, and adaptive immune system as well. The transcriptomic meta-analysis showed that AD is associated with immune-related pathways in the brain’s cortex through the phagosome, complement and coagulation cascade, and chemokine signaling pathways. Interestingly, phagosome and chemokine signaling pathways had potential correlation with B cells receptors pathway.

免疫相关通路可以直接影响免疫系统,如趋化因子信号通路,也可以间接影响免疫系统。据报道,阿尔茨海默病(AD)与几种免疫相关途径有关。然而,探索其潜在机制在动物研究中具有挑战性,因为AD小鼠株差异表达免疫相关通路特征。为了克服这个问题,我们进行了一项荟萃分析,以确定在不同AD小鼠株中表达的显著且一致的免疫相关AD途径。从NCBI GEO数据库中收集来自不同菌株(如APP/PSN1、APP/PS2、3xTg、TREM和5xFAD)的AD小鼠皮层的下一代RNA测序(RNA-seq)和微阵列数据集。每个数据集的质量控制和归一化已经根据高通量分析平台使用各种方法从每个原始研究来源进行了处理(FastQC,比率中值,RMA,阵列归一化之间)。使用RNA-seq的DESeq2和微阵列的GEO2R分析数据集,以鉴定差异表达(DE)基因。使用Stouffer的方法对显著的DE基因进行荟萃分析,并对显著的基因进行进一步的功能富集分析。从NCBI GEO数据库中获得了代表20种条件的10个数据集,包括116个对照和120个AD样本。DE分析鉴定了284个重要的DE基因。荟萃分析确定了三种显著富集的免疫相关AD途径:吞噬体、补体和凝血级联以及趋化因子信号传导。吞噬体相关基因与补体和免疫系统相关。同时,吞噬体和趋化因子信号传导基因与B细胞受体通路基因重叠,表明吞噬体、趋化因子和适应性免疫系统之间也存在潜在的相关性。转录组学荟萃分析表明,AD通过吞噬体、补体和凝血级联以及趋化因子信号通路与大脑皮层的免疫相关通路有关。有趣的是,吞噬体和趋化因子信号通路与B细胞受体通路具有潜在的相关性。
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引用次数: 0
MiR-126 and miR-146a as Melatonin-Responsive Biomarkers for Neonatal Brain Ischemia MiR-126和MiR-146a作为褪黑素反应性生物标记物用于新生儿脑缺血。
IF 3.1 4区 医学 Q3 Neuroscience Pub Date : 2023-09-19 DOI: 10.1007/s12031-023-02155-6
Maria Cristina Albertini, Tania Vanzolini, Serafina Perrone, Michael D. Weiss, Giuseppe Buonocore, Valentina Dell’Orto, Walter Balduini, Silvia Carloni

Despite advances in obstetric and neonatal care, challenges remain in early identification of neonates with encephalopathy due to hypoxia-ischemia who are undergoing therapeutic hypothermia. Therefore, there is a deep search for biomarkers that can identify brain injury. The aims of this study were to investigate the serum and brain expressions of two potential biomarkers, miR-126/miR-146a, in a preclinical model of hypoxia-ischemia (HI)–induced brain injury, and to explore their modulation during melatonin treatment. Seven-day-old rats were subjected to permanent ligation of the right carotid artery followed by 2.5 h hypoxia (HI). Melatonin (15 mg/kg) was administered 5 min after HI. Serum and brain samples were collected 1, 6 and 24 h after HI. Results show that HI caused a significant increase in the circulating levels of both miR-126 and miR-146a during the early phase of ischemic brain damage development (i.e. 1 h), with a parallel and opposite pattern in the ischemic cerebral cortex. These effects are not observed 24 h later. Treatment with melatonin restored the HI-induced effects on miR-126/miR-146a expressions, both in the cerebral cortex and in serum. We conclude that miR-126/miR-146a are promising biomarkers of HI injury and demonstrate an associated change in concentration following melatonin treatment.

尽管产科和新生儿护理取得了进展,但在早期识别因缺氧缺血性脑病而接受低温治疗的新生儿方面仍然存在挑战。因此,人们正在深入寻找能够识别脑损伤的生物标志物。本研究的目的是研究两种潜在生物标志物miR-126/miR-146a在缺氧缺血(HI)诱导的脑损伤临床前模型中的血清和大脑表达,并探索它们在褪黑素治疗过程中的调节作用。对7天大的大鼠进行右颈动脉永久结扎,然后进行2.5小时缺氧(HI)。在HI后5分钟给予褪黑素(15mg/kg)。HI后1、6和24小时采集血清和脑样本。结果显示,在缺血性脑损伤发展的早期阶段(即1小时),HI导致miR-126和miR-146a的循环水平显著增加,在缺血性大脑皮层中具有平行和相反的模式。24小时后未观察到这些影响。褪黑素治疗恢复了HI诱导的对大脑皮层和血清中miR-126/miR-146a表达的影响。我们得出的结论是,miR-126/miR-146a是HI损伤的有前景的生物标志物,并且在褪黑素治疗后表现出相关的浓度变化。
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引用次数: 0
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Journal of Molecular Neuroscience
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