首页 > 最新文献

2019 Computing in Cardiology (CinC)最新文献

英文 中文
A Highly-Reliable Full-Automatic System for Analyzing ECG Waveforms in Real Time Applications 一种高可靠全自动心电波形实时分析系统
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005933
A. Khawaja
The ECG analysis system, presented in this paper, provides beat-to-beat localization, classification and measurements in real time. Besides, numbers of rhythm analysis events can be detected instantly by the system, including critical ventricular and atrial arrhythmia events. Using the system will increase the cardiac safety for patients in many cardiac applications, including home-monitoring, ambulatory monitoring and cardiac drug safety. The algorithms used by the system are validated and tested. Furthermore, the system can be deployed on different computing hardware targets and operation systems.
本文提出的心电分析系统能够实时地对心电进行定位、分类和测量。此外,该系统可以即时检测到心律分析事件的数量,包括关键的室性和心房性心律失常事件。该系统的使用将在许多心脏应用中提高患者的心脏安全性,包括家庭监测、动态监测和心脏药物安全。对系统所采用的算法进行了验证和测试。此外,该系统可以部署在不同的计算硬件目标和操作系统上。
{"title":"A Highly-Reliable Full-Automatic System for Analyzing ECG Waveforms in Real Time Applications","authors":"A. Khawaja","doi":"10.23919/CinC49843.2019.9005933","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005933","url":null,"abstract":"The ECG analysis system, presented in this paper, provides beat-to-beat localization, classification and measurements in real time. Besides, numbers of rhythm analysis events can be detected instantly by the system, including critical ventricular and atrial arrhythmia events. Using the system will increase the cardiac safety for patients in many cardiac applications, including home-monitoring, ambulatory monitoring and cardiac drug safety. The algorithms used by the system are validated and tested. Furthermore, the system can be deployed on different computing hardware targets and operation systems.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"11 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82820695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Generating Healthy Aortic Root Geometries From Ultrasound Images of the Individual Pathological Morphology Using Deep Convolutional Autoencoders 利用深度卷积自编码器从个体病理形态的超声图像中生成健康的主动脉根部几何形状
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005819
J. Hagenah, Mohamad Mehdi, F. Ernst
In valve-sparing aortic root reconstruction surgery, estimating the individual healthy shape of the aortic root as it was before pathological deformation is a challenging task. However, exactly this estimation is necessary to develop personalized aortic root prostheses. To support the surgeon in this decision making, we present a novel approach to reconstruct the healthy shape of an aortic root based on ultrasound images of its pathologically dilated state using representation learning.The idea is to identify a suitable representation of healthy and pathological aortic root shapes using a supervised variational autoencoder. Then, an image of the dilated root can be encoded, manipulated in the latent space, i.e. shifted towards the distribution of healthy valves, and a synthetic image of this resulting shape can be generated using the decoder.We evaluate our method on an ex-vivo porcine data set and provide a proof-of-concept of our method in a qualitative and quantitavie way. Our results indicate the great potential of reducing a complex shape deformation task to a simple and intuitive shifting towards a specific class. Hence, our method could play an important role in the shaping of personalized implants and is, due to its data-driven nature, not limited to cardiovascular applications but also for other organs.
在保留瓣膜的主动脉根重建手术中,评估病理性变形前个体主动脉根的健康形状是一项具有挑战性的任务。然而,正是这种估计是必要的,以发展个性化的主动脉根部假体。为了支持外科医生做出这一决策,我们提出了一种新的方法,基于其病理扩张状态的超声图像,使用表征学习来重建主动脉根的健康形状。这个想法是使用监督变分自编码器识别健康和病理主动脉根部形状的合适表示。然后,可以对扩张根的图像进行编码,在潜在空间中进行操作,即向健康瓣膜的分布移动,并且可以使用解码器生成该形状的合成图像。我们在离体猪数据集上评估了我们的方法,并以定性和定量的方式提供了我们方法的概念证明。我们的结果表明,将复杂的形状变形任务减少到简单直观地转向特定类的巨大潜力。因此,我们的方法可以在个性化植入物的塑造中发挥重要作用,并且由于其数据驱动的性质,不仅限于心血管应用,还适用于其他器官。
{"title":"Generating Healthy Aortic Root Geometries From Ultrasound Images of the Individual Pathological Morphology Using Deep Convolutional Autoencoders","authors":"J. Hagenah, Mohamad Mehdi, F. Ernst","doi":"10.23919/CinC49843.2019.9005819","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005819","url":null,"abstract":"In valve-sparing aortic root reconstruction surgery, estimating the individual healthy shape of the aortic root as it was before pathological deformation is a challenging task. However, exactly this estimation is necessary to develop personalized aortic root prostheses. To support the surgeon in this decision making, we present a novel approach to reconstruct the healthy shape of an aortic root based on ultrasound images of its pathologically dilated state using representation learning.The idea is to identify a suitable representation of healthy and pathological aortic root shapes using a supervised variational autoencoder. Then, an image of the dilated root can be encoded, manipulated in the latent space, i.e. shifted towards the distribution of healthy valves, and a synthetic image of this resulting shape can be generated using the decoder.We evaluate our method on an ex-vivo porcine data set and provide a proof-of-concept of our method in a qualitative and quantitavie way. Our results indicate the great potential of reducing a complex shape deformation task to a simple and intuitive shifting towards a specific class. Hence, our method could play an important role in the shaping of personalized implants and is, due to its data-driven nature, not limited to cardiovascular applications but also for other organs.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"45 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91544427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
How Accurately Can We Detect Atrial Fibrillation Using Photoplethysmography Data Measured in Daily Life? 在日常生活中使用光电容积脉搏波数据检测心房颤动的准确性如何?
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005802
Linda M. Eerikäinen, A. Bonomi, Fons Schipper, L. Dekker, R. Vullings, H. M. Morree, Ronald M. Aarts
Photoplethysmography (PPG) is an unobtrusive measurement modality recently explored for the detection of atrial fibrillation (AF). When used in wrist-worn applications, PPG-monitoring can be used for long-term monitoring in daily life, which is beneficial when aiming to detect AF. The objective of this study was to investigate whether the performance of an AF detection model trained and tested on short measurements is generalizable to measurements in daily life. PPG, accelerometer, as well as reference ECG data were measured from 32 subjects (13 continuous AF, 19 no AF) in 24-hour monitoring in daily life. An AF detection model combining inter-pulse interval features was trained to classify AF or non-AF. Short measurements were obtained by selecting a 5-minute segment from each 24-hour recording and used for training the model. The accuracy was tested on both 5-minute segments and 24-hour data. Sensitivity, specificity, and accuracy of the model were 98.90%, 99.03%, and 98.98% with 5-minute data and 96.94%, 91.99%, and 93.91% with 24-hour data. False positive detections per patient worsened from being on average none during short recordings to (mean ± sd) 467 ± 328 in daily life. Thus, testing the AF detection models intended for long-term PPG-monitoring is essential with data from daily life in order to obtain a realistic estimate of the accuracy.
光电容积脉搏波(PPG)是一种不显眼的测量方式,最近探索心房颤动(AF)的检测。在腕带应用中,ppg监测可以用于日常生活中的长期监测,这对于检测AF是有益的。本研究的目的是研究在短时间测量中训练和测试的AF检测模型的性能是否可推广到日常生活中的测量。对32例受试者(连续AF 13例,无AF 19例)日常生活24小时监测PPG、加速度计及参考心电图数据进行测量。结合脉冲间间隔特征,训练AF检测模型对AF和非AF进行分类。通过从每24小时的记录中选择5分钟的片段获得短测量值,并用于训练模型。对5分钟片段和24小时数据的准确性进行了测试。模型的敏感性、特异性和准确性在5分钟数据时分别为98.90%、99.03%和98.98%,在24小时数据时分别为96.94%、91.99%和93.91%。每位患者的假阳性检出率从短暂记录期间的平均无增加到日常生活中的(平均±sd) 467±328。因此,测试用于长期ppg监测的AF检测模型必须使用日常生活中的数据,以便获得对准确性的现实估计。
{"title":"How Accurately Can We Detect Atrial Fibrillation Using Photoplethysmography Data Measured in Daily Life?","authors":"Linda M. Eerikäinen, A. Bonomi, Fons Schipper, L. Dekker, R. Vullings, H. M. Morree, Ronald M. Aarts","doi":"10.23919/CinC49843.2019.9005802","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005802","url":null,"abstract":"Photoplethysmography (PPG) is an unobtrusive measurement modality recently explored for the detection of atrial fibrillation (AF). When used in wrist-worn applications, PPG-monitoring can be used for long-term monitoring in daily life, which is beneficial when aiming to detect AF. The objective of this study was to investigate whether the performance of an AF detection model trained and tested on short measurements is generalizable to measurements in daily life. PPG, accelerometer, as well as reference ECG data were measured from 32 subjects (13 continuous AF, 19 no AF) in 24-hour monitoring in daily life. An AF detection model combining inter-pulse interval features was trained to classify AF or non-AF. Short measurements were obtained by selecting a 5-minute segment from each 24-hour recording and used for training the model. The accuracy was tested on both 5-minute segments and 24-hour data. Sensitivity, specificity, and accuracy of the model were 98.90%, 99.03%, and 98.98% with 5-minute data and 96.94%, 91.99%, and 93.91% with 24-hour data. False positive detections per patient worsened from being on average none during short recordings to (mean ± sd) 467 ± 328 in daily life. Thus, testing the AF detection models intended for long-term PPG-monitoring is essential with data from daily life in order to obtain a realistic estimate of the accuracy.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"1 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91117386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Detection and Termination of Broken-Spiral-Waves in Mathematical Models for Cardiac Tissue: A Deep-Learning Approach 心脏组织数学模型中破碎螺旋波的检测和终止:一种深度学习方法
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005822
Mahesh Kumar Mulimani, Jaya Kumar Alageshan, R. Pandit
Defibrillation, the elimination of pathological waves of electrical activation in cardiac tissue, plays an important role in the elimination of life-threatening cardiac arrhythmias like ventricular tachycardia (VT) and ventricular fibrillation (VF). We develop a deep-learning method, which uses a convolution neural network (CNN), to develop a new defibrillation scheme applicable in 2D tisue. We begin by training our CNN with a huge dataset of spiral waves $left( mathcal{S} right)$ and non-spiral waves $left( {mathcal{N}mathcal{S}} right)$ that we obtain from our direct numerical simulations (DNSs) of a variety of mathematical models for the propagation of electrical waves of activation in cardiac tissue. Our trained CNN can distinguish between $mathcal{S}$ and $mathcal{N}mathcal{S}$ patterns; in particular, it also detects a broken spiral wave as $mathcal{S}$. We demonstrate how to use our CNN to develop a heat map, from a broken-spiral-wave image, that yields the approximate locations of these spiral cores. We develop a defibrillation scheme that applies current, with two-dimensional (2D) Gaussian profiles of standard deviation (σ), centred at square lattice sites (NG × NG) imposed on the simulation domain (N ×N); the amplitudes of these Gaussians are taken from the heatmap. We explore the dependence of our Gaussian defibrillation scheme on a noisy image, which closely mimics the noisy optical image data.
除颤是消除心脏组织电激活的病理波,在消除室性心动过速(VT)和心室颤动(VF)等危及生命的心律失常中起着重要作用。我们开发了一种深度学习方法,该方法使用卷积神经网络(CNN)来开发一种适用于二维组织的新型除颤方案。我们首先用一个巨大的螺旋波$left(mathcal{S} right)$和非螺旋波$left({mathcal{N}mathcal{S}} right)$的数据集来训练我们的CNN,这些数据集是我们从心脏组织中激活电波传播的各种数学模型的直接数值模拟(dns)中获得的。我们训练的CNN可以区分$mathcal{S}$和$mathcal{N}mathcal{S}$模式;特别是,它还检测到一个破碎的螺旋波为$mathcal{S}$。我们演示了如何使用我们的CNN从破碎的螺旋波图像中开发热图,从而产生这些螺旋核心的大致位置。我们开发了一种除颤方案,该方案应用电流,具有二维(2D)高斯分布的标准差(σ),以施加在模拟域中的方形晶格位点(NG × NG)为中心(N ×N);这些高斯函数的振幅取自热图。我们探讨了高斯除颤方案对噪声图像的依赖性,该图像近似于噪声光学图像数据。
{"title":"Detection and Termination of Broken-Spiral-Waves in Mathematical Models for Cardiac Tissue: A Deep-Learning Approach","authors":"Mahesh Kumar Mulimani, Jaya Kumar Alageshan, R. Pandit","doi":"10.23919/CinC49843.2019.9005822","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005822","url":null,"abstract":"Defibrillation, the elimination of pathological waves of electrical activation in cardiac tissue, plays an important role in the elimination of life-threatening cardiac arrhythmias like ventricular tachycardia (VT) and ventricular fibrillation (VF). We develop a deep-learning method, which uses a convolution neural network (CNN), to develop a new defibrillation scheme applicable in 2D tisue. We begin by training our CNN with a huge dataset of spiral waves $left( mathcal{S} right)$ and non-spiral waves $left( {mathcal{N}mathcal{S}} right)$ that we obtain from our direct numerical simulations (DNSs) of a variety of mathematical models for the propagation of electrical waves of activation in cardiac tissue. Our trained CNN can distinguish between $mathcal{S}$ and $mathcal{N}mathcal{S}$ patterns; in particular, it also detects a broken spiral wave as $mathcal{S}$. We demonstrate how to use our CNN to develop a heat map, from a broken-spiral-wave image, that yields the approximate locations of these spiral cores. We develop a defibrillation scheme that applies current, with two-dimensional (2D) Gaussian profiles of standard deviation (σ), centred at square lattice sites (NG × NG) imposed on the simulation domain (N ×N); the amplitudes of these Gaussians are taken from the heatmap. We explore the dependence of our Gaussian defibrillation scheme on a noisy image, which closely mimics the noisy optical image data.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"15 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90470290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Clustered Standard Deviation and Its Benefit to Identify Atrial Fibrillation 聚类标准差及其鉴别心房颤动的价值
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005759
F. Plesinger, I. Viscor, P. Nejedly, V. Bulkova, J. Halámek, P. Jurák
Background: Atrial fibrillation (AF) is a dysfunction of heart atriums shown as irregular heart activity leading to a higher risk of heart failure. Since AF may occur episodically, it is usually diagnosed using ECG Holter recordings. However, the presence of other pathologies and noise makes the automated processing of ECG Holter recordings complicated. Here, we present a new feature to distinguish AF from sinus rhythm as well as from other pathologies: Clustered Standard Deviation (CSTD).Method: QRS complexes are extracted from the ECG signal, and inter-beat intervals (RR) are ordered by their length. Then, RR clusters are found and the mean RR value is computed for each RR cluster. CSTD is computed using a formula for standard deviation using cluster-specific mean values instead of a global mean.Results: CSTD was evaluated for 7,254 ECG segments from a private dataset (MDT company, Brno, Czechia), 60 seconds length, 1-lead, 250 Hz sampling frequency. CSTD showed high values for AF while remaining low for other pathologies and sinus rhythm. CSTD between AF and other classes showed AUC 0.95. For comparison, a standard deviation of RR intervals leads to AUC 0.65 due to its sensitivity to other pathologies. Test on public MIT-AFDB dataset shown AUC and AUPRC 0.98 and 0.97, respectively.
背景:心房颤动(AF)是一种心房功能障碍,表现为不规则的心脏活动,导致心力衰竭的风险更高。由于房颤可能是偶发的,因此通常使用心电图动态心电图来诊断。然而,其他病理和噪声的存在使得自动处理心电图动态电位记录变得复杂。在这里,我们提出了一个新的特征来区分心房颤动与窦性心律以及其他病理:聚类标准偏差(CSTD)。方法:从心电信号中提取QRS复合物,并按其长度排序。然后,找到RR聚类并计算每个RR聚类的平均RR值。CSTD的计算使用的是标准偏差公式,使用集群特定的平均值而不是全局平均值。结果:CSTD评估了来自私人数据集(MDT公司,Brno, Czechia)的7254个心电段,60秒长度,1导联,250 Hz采样频率。心房颤动的CSTD值较高,而其他病理和窦性心律的CSTD值较低。AF组与其他组间CSTD的AUC为0.95。相比之下,由于其对其他病理的敏感性,RR区间的标准差导致AUC为0.65。在MIT-AFDB公共数据集上的测试显示AUC和AUPRC分别为0.98和0.97。
{"title":"Clustered Standard Deviation and Its Benefit to Identify Atrial Fibrillation","authors":"F. Plesinger, I. Viscor, P. Nejedly, V. Bulkova, J. Halámek, P. Jurák","doi":"10.23919/CinC49843.2019.9005759","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005759","url":null,"abstract":"Background: Atrial fibrillation (AF) is a dysfunction of heart atriums shown as irregular heart activity leading to a higher risk of heart failure. Since AF may occur episodically, it is usually diagnosed using ECG Holter recordings. However, the presence of other pathologies and noise makes the automated processing of ECG Holter recordings complicated. Here, we present a new feature to distinguish AF from sinus rhythm as well as from other pathologies: Clustered Standard Deviation (CSTD).Method: QRS complexes are extracted from the ECG signal, and inter-beat intervals (RR) are ordered by their length. Then, RR clusters are found and the mean RR value is computed for each RR cluster. CSTD is computed using a formula for standard deviation using cluster-specific mean values instead of a global mean.Results: CSTD was evaluated for 7,254 ECG segments from a private dataset (MDT company, Brno, Czechia), 60 seconds length, 1-lead, 250 Hz sampling frequency. CSTD showed high values for AF while remaining low for other pathologies and sinus rhythm. CSTD between AF and other classes showed AUC 0.95. For comparison, a standard deviation of RR intervals leads to AUC 0.65 due to its sensitivity to other pathologies. Test on public MIT-AFDB dataset shown AUC and AUPRC 0.98 and 0.97, respectively.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"17 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84764915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cracking the “Sepsis” Code: Assessing Time Series Nature of EHR Data, and Using Deep Learning for Early Sepsis Prediction 破解“败血症”代码:评估电子病历数据的时间序列性质,并使用深度学习进行早期败血症预测
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005940
Soodabeh Sarafrazi, R. Choudhari, Chiral Mehta, H. Mehta, Omid K. Japalaghi, Jie Han, Kinjal A Mehta, H. Han, P. Francis-Lyon
On a yearly basis, sepsis costs US hospitals more than any other health condition. A majority of patients who suffer from sepsis are not diagnosed at the time of admission. Early detection and antibiotic treatment of sepsis are vital to improve outcomes for these patients, as each hour of delayed treatment is associated with increased mortality. In this study our goal is to predict sepsis 12 hours before its diagnosis using vitals and blood tests routinely taken in the ICU. We have investigated the performance of several machine learning algorithms including XGBoost, CNN, CNN-LSTM and CNN-XGBoost. Contrary to our expectations, XGBoost outperforms all of the sequential models and yields the best hour-by-hour prediction, perhaps due to the way we imputed missing values, losing signal that relates to the time-series nature of the EHR data. We added feature engineering to detect change points in tests and vitals, resulting in 5% improvement in XGBoost. Our team, USF-Sepsis-Phys, achieved a utility score of 0.22 (untuned threshold) and an average of the three reported AUCs (test sets A, B, C) of 0.82. As expected with this AUC, the same model with tuned threshold (not run in the PhysioNet challenge) performed significantly better, as evaluated with 3-fold cross-validation of the entire PhyisoNet training set.
每年,败血症给美国医院造成的损失超过其他任何健康状况。大多数患有败血症的患者在入院时没有得到诊断。败血症的早期发现和抗生素治疗对于改善这些患者的预后至关重要,因为每延迟治疗一小时,死亡率就会增加。在这项研究中,我们的目标是在诊断前12小时通过ICU例行的生命体征和血液检查来预测败血症。我们研究了几种机器学习算法的性能,包括XGBoost、CNN、CNN- lstm和CNN-XGBoost。与我们的预期相反,XGBoost优于所有序列模型,并产生最佳的逐小时预测,这可能是由于我们输入缺失值的方式,丢失了与EHR数据的时间序列特性相关的信号。我们添加了特征工程来检测测试和生命体征中的变化点,从而使XGBoost提高了5%。我们的团队usf -脓毒症- phys的效用得分为0.22(未调优阈值),三个报告的auc(测试集a, B, C)的平均值为0.82。正如预期的那样,在这个AUC中,调优阈值的相同模型(不在PhysioNet挑战中运行)表现明显更好,正如对整个PhysioNet训练集进行3倍交叉验证所评估的那样。
{"title":"Cracking the “Sepsis” Code: Assessing Time Series Nature of EHR Data, and Using Deep Learning for Early Sepsis Prediction","authors":"Soodabeh Sarafrazi, R. Choudhari, Chiral Mehta, H. Mehta, Omid K. Japalaghi, Jie Han, Kinjal A Mehta, H. Han, P. Francis-Lyon","doi":"10.23919/CinC49843.2019.9005940","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005940","url":null,"abstract":"On a yearly basis, sepsis costs US hospitals more than any other health condition. A majority of patients who suffer from sepsis are not diagnosed at the time of admission. Early detection and antibiotic treatment of sepsis are vital to improve outcomes for these patients, as each hour of delayed treatment is associated with increased mortality. In this study our goal is to predict sepsis 12 hours before its diagnosis using vitals and blood tests routinely taken in the ICU. We have investigated the performance of several machine learning algorithms including XGBoost, CNN, CNN-LSTM and CNN-XGBoost. Contrary to our expectations, XGBoost outperforms all of the sequential models and yields the best hour-by-hour prediction, perhaps due to the way we imputed missing values, losing signal that relates to the time-series nature of the EHR data. We added feature engineering to detect change points in tests and vitals, resulting in 5% improvement in XGBoost. Our team, USF-Sepsis-Phys, achieved a utility score of 0.22 (untuned threshold) and an average of the three reported AUCs (test sets A, B, C) of 0.82. As expected with this AUC, the same model with tuned threshold (not run in the PhysioNet challenge) performed significantly better, as evaluated with 3-fold cross-validation of the entire PhyisoNet training set.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"42 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85151091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Inducibility of Atrial Fibrillation Depends Chaotically on Ionic Model Parameters 心房颤动的诱发性混沌地依赖于离子模型参数
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005889
M. Potse
Previous work has shown that fibrillation can be induced by rapid pacing in a model of the human atria without fibrosis or repolarization heterogeneity. The purpose of this study was to investigate how sensitive this type of arrhythmia induction is to model parameters.Simulations were performed with a monodomain reaction-diffusion model with Courtemanche dynamics on a volumetric atrial mesh with all the major bundle structures and layered fiber orientation. The ionic model parameters were modified to represent electrically remodeled atria, uniformly. The model was stimulated with decreasing cycle length to drive the atria to maximum rate, and simulated over 10 seconds. This was tried with 10 different pacing locations and 46 different values of the conductivity, gCaL, of the L-type calcium current.For gCaL values up to 130% of the initial value, on average 4 out of 10 pacing sites induced AF. However, the positive sites were different for each tested gCaL level, even at 1% increments. Beyond 130%, the AF induction rate decreased. Every pacing site yielded AF for a subset of parameter values, but some sites more frequently.In conclusion, AF induction is highly sensitive to parameter values. The global decrease in induction seen for large gCaL may be due to the increased wavelength.
先前的研究表明,在没有纤维化或复极化异质性的人类心房模型中,快速起搏可诱导心房颤动。本研究的目的是探讨这种类型的心律失常诱导对模型参数的敏感性。在具有所有主要束结构和层状纤维取向的容积式心房网上,采用具有Courtemanche动力学的单域反应扩散模型进行了模拟。离子模型参数被修改,以均匀地表示电重构的心房。通过减小循环长度刺激心房达到最大速率,模拟时间超过10秒。在10个不同的起搏位置和46个不同的l型钙电流电导率gCaL值下进行了试验。当gCaL值达到初始值的130%时,平均10个起搏位点中有4个诱发心房颤动。然而,即使在gCaL水平增加1%时,每个检测的阳性位点也是不同的。超过130%,AF诱导率下降。每个起搏点产生AF参数值的子集,但有些点更频繁。综上所述,AF感应对参数值高度敏感。对于大gCaL,感应强度的整体下降可能是由于波长增加。
{"title":"Inducibility of Atrial Fibrillation Depends Chaotically on Ionic Model Parameters","authors":"M. Potse","doi":"10.23919/CinC49843.2019.9005889","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005889","url":null,"abstract":"Previous work has shown that fibrillation can be induced by rapid pacing in a model of the human atria without fibrosis or repolarization heterogeneity. The purpose of this study was to investigate how sensitive this type of arrhythmia induction is to model parameters.Simulations were performed with a monodomain reaction-diffusion model with Courtemanche dynamics on a volumetric atrial mesh with all the major bundle structures and layered fiber orientation. The ionic model parameters were modified to represent electrically remodeled atria, uniformly. The model was stimulated with decreasing cycle length to drive the atria to maximum rate, and simulated over 10 seconds. This was tried with 10 different pacing locations and 46 different values of the conductivity, gCaL, of the L-type calcium current.For gCaL values up to 130% of the initial value, on average 4 out of 10 pacing sites induced AF. However, the positive sites were different for each tested gCaL level, even at 1% increments. Beyond 130%, the AF induction rate decreased. Every pacing site yielded AF for a subset of parameter values, but some sites more frequently.In conclusion, AF induction is highly sensitive to parameter values. The global decrease in induction seen for large gCaL may be due to the increased wavelength.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"17 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83975362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Analysis of Signal-Averaged Electrocardiogram Performance for Body Surface Recordings 体表记录的信号平均心电图性能分析
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005816
Nolwenn Tan, L. Bear, M. Potse, Stéphane Puyo, M. Meo, R. Dubois
To test the performance of signal averaging on body surface electrocardiograms (SAECG), a comparative analysis of four sources of perturbation, 1) uncorrelated noise, 2) beat alignment, 3) physiological variability and 4) respiratory movement was performed. The first two cases were assessed using a computer model of a ventricular beat. The other two cases were tested using high resolution body surface signals recorded from a torso tank (N=2) and patient data (N=4) respectively. In the first case, SAECG successfully removed a high level of noise made up of white Gaussian noise (WGN) with σ = 10 µV and 50 Hz noise with a signal to noise ratio (SNR) of 9 dB since the root mean square error of the noise (RMSEnoise) was 0.65 ± 0.01 µV and 1.30 ± 0.01 µV, respectively. The RMSE of the averaged QRS (RMSESAQRS) was slightly changed by physiological variability (RMSESAQRS =4.18 ± 1.38 µV) when comparing the SAQRS resulting from the average of 100 different beats taken from the same recording. While SAQRS are distorted by respiration artefacts, the beats selected during the exhalation phase produced the least distortion to the SAQRS with a RMSESAQRS = 16.28 ± 12.58 µV. To conclude, SAECG can efficiently de-noise signals in presence of uncorrelated noise without distorting the SAQRS. However, respiration motion introduces amplitude shift between SAQRS.
为了测试体表心电图(SAECG)信号平均的性能,对四种干扰源进行了比较分析,1)不相关噪声,2)心跳对齐,3)生理变异和4)呼吸运动。前两例使用计算机心室跳动模型进行评估。另外两例分别使用躯干槽记录的高分辨率体表信号(N=2)和患者数据(N=4)进行测试。在第一种情况下,SAECG成功地去除了由σ = 10µV的高斯白噪声(WGN)和信噪比(SNR)为9 dB的50 Hz噪声(RMSEnoise)的均方根误差分别为0.65±0.01µV和1.30±0.01µV)组成的高水平噪声。与同一录音中100次不同节拍的平均QRS相比,平均QRS (RMSESAQRS)的RMSE (RMSESAQRS =4.18±1.38µV)受生理变异的影响略有变化。呼吸伪影会使SAQRS失真,而在呼气阶段选择的节拍对SAQRS失真最小,RMSESAQRS = 16.28±12.58µV。综上所述,SAECG可以有效地去除存在不相关噪声的信号,而不会使SAQRS失真。然而,呼吸运动引入了SAQRS之间的振幅移位。
{"title":"Analysis of Signal-Averaged Electrocardiogram Performance for Body Surface Recordings","authors":"Nolwenn Tan, L. Bear, M. Potse, Stéphane Puyo, M. Meo, R. Dubois","doi":"10.23919/CinC49843.2019.9005816","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005816","url":null,"abstract":"To test the performance of signal averaging on body surface electrocardiograms (SAECG), a comparative analysis of four sources of perturbation, 1) uncorrelated noise, 2) beat alignment, 3) physiological variability and 4) respiratory movement was performed. The first two cases were assessed using a computer model of a ventricular beat. The other two cases were tested using high resolution body surface signals recorded from a torso tank (N=2) and patient data (N=4) respectively. In the first case, SAECG successfully removed a high level of noise made up of white Gaussian noise (WGN) with σ = 10 µV and 50 Hz noise with a signal to noise ratio (SNR) of 9 dB since the root mean square error of the noise (RMSEnoise) was 0.65 ± 0.01 µV and 1.30 ± 0.01 µV, respectively. The RMSE of the averaged QRS (RMSESAQRS) was slightly changed by physiological variability (RMSESAQRS =4.18 ± 1.38 µV) when comparing the SAQRS resulting from the average of 100 different beats taken from the same recording. While SAQRS are distorted by respiration artefacts, the beats selected during the exhalation phase produced the least distortion to the SAQRS with a RMSESAQRS = 16.28 ± 12.58 µV. To conclude, SAECG can efficiently de-noise signals in presence of uncorrelated noise without distorting the SAQRS. However, respiration motion introduces amplitude shift between SAQRS.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"2 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88914172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Assessment of the Autonomic Response to Sensory Stimulation in Autism Spectrum Disorder 自闭症谱系障碍患者对感觉刺激的自主神经反应评估
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005771
L. Cavinato, Annie Cardinaux, Wasifa Jamal, M. Kjelgaard, P. Sinha, R. Barbieri
Defined as the ability of the nervous systems to reduce their response over repeated stimulation, habituation inflects its parameters in terms of frequency, intensity, recovery and anticipation of responses. Although its concepts have developed from the study of the Central Nervous System (CNS) in processing stimuli at the cortical level, we aim at defining habituation from an autonomic point of view, via heart rate and heart rate variability assessments. To this extent, by using a point-process approach, we devise a novel Autonomic Reactivity Function (ARF) describing the time-varying Autonomic Nervous System (ANS) response in terms of intensity and anticipation, whose reduction (or increment) over repeated stimuli can be ascribed to habituating (or sensitizating) patterns. We tested the mathematical formalization of such metrics in both neurotypical subjects and children with autism spectrum disorder. By eliciting autonomic responses via multisensory stimulation, we collected electrocardiography (ECG) signals, pulled ARFs out from them and performed the Persons coefficient between autonomic habituation metrics and participants sensory profiles and disorder severeness. Results show a relevant positive correlation with Short Sensory Profile (SSP-2) questionnaire (60%) and with Autism Diagnostic Observation Schedule (ADOS-2) questionnaire (76%).
习惯化被定义为神经系统在反复刺激下减少反应的能力,它影响了反应的频率、强度、恢复和预期等参数。虽然它的概念是从中枢神经系统(CNS)在皮层水平处理刺激的研究中发展而来的,但我们的目标是从自主神经的角度出发,通过心率和心率变异性评估来定义习惯化。在这种程度上,通过使用点过程方法,我们设计了一种新的自主神经反应函数(ARF),描述了在强度和预期方面随时间变化的自主神经系统(ANS)反应,其在重复刺激下的减少(或增加)可归因于习惯(或敏化)模式。我们在神经正常的受试者和自闭症谱系障碍儿童中测试了这些指标的数学形式化。通过多感觉刺激引发自主神经反应,我们收集了心电图(ECG)信号,从中提取arf,并计算了自主神经习惯指标与参与者感觉特征和障碍严重程度之间的Persons系数。结果显示与SSP-2问卷(60%)和ADOS-2问卷(76%)呈正相关。
{"title":"Assessment of the Autonomic Response to Sensory Stimulation in Autism Spectrum Disorder","authors":"L. Cavinato, Annie Cardinaux, Wasifa Jamal, M. Kjelgaard, P. Sinha, R. Barbieri","doi":"10.23919/CinC49843.2019.9005771","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005771","url":null,"abstract":"Defined as the ability of the nervous systems to reduce their response over repeated stimulation, habituation inflects its parameters in terms of frequency, intensity, recovery and anticipation of responses. Although its concepts have developed from the study of the Central Nervous System (CNS) in processing stimuli at the cortical level, we aim at defining habituation from an autonomic point of view, via heart rate and heart rate variability assessments. To this extent, by using a point-process approach, we devise a novel Autonomic Reactivity Function (ARF) describing the time-varying Autonomic Nervous System (ANS) response in terms of intensity and anticipation, whose reduction (or increment) over repeated stimuli can be ascribed to habituating (or sensitizating) patterns. We tested the mathematical formalization of such metrics in both neurotypical subjects and children with autism spectrum disorder. By eliciting autonomic responses via multisensory stimulation, we collected electrocardiography (ECG) signals, pulled ARFs out from them and performed the Persons coefficient between autonomic habituation metrics and participants sensory profiles and disorder severeness. Results show a relevant positive correlation with Short Sensory Profile (SSP-2) questionnaire (60%) and with Autism Diagnostic Observation Schedule (ADOS-2) questionnaire (76%).","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"56 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87326821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determination of Incremental Local Pulse Wave Velocity Using Arterial Diameter Waveform: Mathematical Modeling and Practical Implementation 利用动脉直径波形确定局部脉搏波速度增量:数学建模和实际实现
Pub Date : 2019-09-01 DOI: 10.23919/CinC49843.2019.9005848
P. Nabeel, V. R. Kiran, J. Joseph, M. Sivaprakasam
Background and Aim: Given the knowledge of the non-invasive assessment of local pulse wave velocity (PWV) for cardiovascular risk stratification, it is apparent that it is necessary to develop a practically feasible solution to measure and trace instantaneous variations in local PWV (incremental local PWV) from the target arteries.Methods: From the arterial blood pulse propagation characteristics, wave nature of the transmural pressure, and the distending vessel wall geometry, a mathematical model was developed to evaluate incremental local PWV using arterial diameter waveform. Its practical feasibility and the measurement accuracy were demonstrated in-vivo using a custom image-free ultrasound device, with the Bramwell-Hill method as the reference.Results: The proposed technique and developed device reliably captured incremental local PWV from the carotid artery. The locus of instantaneous variations in carotid local PWV obtained using the developed model traced the reference values, with a root-mean-square-error lesser than 0.05 m/s. Study results further established the practical feasibility and accuracy of this novel approach.Conclusion: The theoretical basis and measurement method of this work is a solution for non-invasive, real-time assessment of incremental local PWV and its locus.
背景和目的:鉴于对心血管危险分层的局部脉搏波速度(PWV)的无创评估的知识,显然有必要开发一种切实可行的解决方案来测量和追踪目标动脉局部PWV(增量局部PWV)的瞬时变化。方法:从动脉血脉冲的传播特性、跨壁压力的波动特性和扩张血管壁的几何形状出发,建立了利用动脉直径波形评估局部PWV增量的数学模型。以Bramwell-Hill法为参照,利用自定义的无图像超声装置在体内验证了该方法的实际可行性和测量精度。结果:所提出的技术和开发的装置可靠地捕获了颈动脉局部增加的PWV。利用所建立的模型获得的颈动脉局部PWV瞬时变化轨迹与参考值相符,均方根误差小于0.05 m/s。研究结果进一步证实了该方法的实际可行性和准确性。结论:本研究的理论基础和测量方法是一种无创、实时评估局部渐进式PWV及其位置的方法。
{"title":"Determination of Incremental Local Pulse Wave Velocity Using Arterial Diameter Waveform: Mathematical Modeling and Practical Implementation","authors":"P. Nabeel, V. R. Kiran, J. Joseph, M. Sivaprakasam","doi":"10.23919/CinC49843.2019.9005848","DOIUrl":"https://doi.org/10.23919/CinC49843.2019.9005848","url":null,"abstract":"Background and Aim: Given the knowledge of the non-invasive assessment of local pulse wave velocity (PWV) for cardiovascular risk stratification, it is apparent that it is necessary to develop a practically feasible solution to measure and trace instantaneous variations in local PWV (incremental local PWV) from the target arteries.Methods: From the arterial blood pulse propagation characteristics, wave nature of the transmural pressure, and the distending vessel wall geometry, a mathematical model was developed to evaluate incremental local PWV using arterial diameter waveform. Its practical feasibility and the measurement accuracy were demonstrated in-vivo using a custom image-free ultrasound device, with the Bramwell-Hill method as the reference.Results: The proposed technique and developed device reliably captured incremental local PWV from the carotid artery. The locus of instantaneous variations in carotid local PWV obtained using the developed model traced the reference values, with a root-mean-square-error lesser than 0.05 m/s. Study results further established the practical feasibility and accuracy of this novel approach.Conclusion: The theoretical basis and measurement method of this work is a solution for non-invasive, real-time assessment of incremental local PWV and its locus.","PeriodicalId":6697,"journal":{"name":"2019 Computing in Cardiology (CinC)","volume":"5 1","pages":"Page 1-Page 4"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88405096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
2019 Computing in Cardiology (CinC)
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1