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Copper pyrithione, a copper complex ATG4B and autophagy inhibitor, exhibits potent anticancer effects. 铜吡硫酮是一种铜络合物ATG4B和自噬抑制剂,具有有效的抗癌作用。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-07-28 DOI: 10.1038/s41401-025-01619-2
Peng-Fei Qiang, Yao Wang, Dong-Yang Zhang, Yuan-Ling Yan, Hui-Ting Huang, Hui-Xi Yi, Hua-Zhong Xie, Man Zhao, Min Li, Yuan-Yuan Fu

Inhibition of autophagy has been considered as a promising strategy for tumor therapy, discovery of small-molecule autophagy inhibitors suitable for clinical use would be of great significance. Since cysteine protease ATG4B plays a key role in the autophagy machinery by processing pro-LC3 and lipidated LC3 to drive the autophagy progress, inhibition of ATG4B may serve as a potential therapeutic strategy. We previously found that copper ions instead of other ions efficiently inhibited ATG4B activity, which was more potent than other ATG4B inhibitors reported. As copper ions are easily chelated, copper complexes may develop into novel ATG4B inhibitors. In this study we identified a copper complex antifouling agent, copper pyrithione (CuPT), which effectively inhibited ATG4B activity and blocked autophagy flux. By combining FRET-based assay in vitro and cell-based assays, we showed that CuPT effectively inhibited ATG4B activity with an IC50 of 250.9 nM. CuPT (0.5, 1, 2 µM) dose-dependently promoted the formation of insoluble ATG4B and p62 aggregates in HeLa cells, which was similar to copper ions. Importantly, CuPT exhibited potent anticancer activities in vitro and in vivo: it potently suppressed the cell viability of 8 different cancer cell lines with IC50 values less than 1 µM; administration of CuPT (1 mg/kg; i.p. every three days) significantly inhibited the tumor growth in colorectal xenograft mouse model without obvious organs damage. CuPT-induced cytotoxicity in HCT116 cells could be reversed by enhancing autophagy using rapamycin or Earle's Balanced Salt Solution (EBSS). Besides, we demonstrated that CuPT induced a novel copper-dependent cell death, cuproptosis, of cancer cells. Together, this study presents the first copper complex ATG4B inhibitor CuPT, a copper compound that can be further developed for the treatment of a wide range of cancers.

抑制自噬已被认为是一种很有前景的肿瘤治疗策略,发现适合临床使用的小分子自噬抑制剂具有重要意义。由于半胱氨酸蛋白酶ATG4B在自噬机制中发挥关键作用,通过加工前LC3和脂化LC3来驱动自噬进程,抑制ATG4B可能是一种潜在的治疗策略。我们之前发现铜离子而不是其他离子有效地抑制ATG4B活性,这比其他ATG4B抑制剂更有效。由于铜离子易于螯合,铜配合物可能发展成新的ATG4B抑制剂。本研究鉴定出一种铜络合物防污剂铜吡硫酮(CuPT),它能有效抑制ATG4B活性,阻断自噬通量。结合体外实验和细胞实验,我们发现CuPT有效抑制ATG4B活性,IC50为250.9 nM。CuPT(0.5, 1,2µM)剂量依赖性地促进HeLa细胞中不溶性ATG4B和p62聚集体的形成,这与铜离子类似。重要的是,CuPT在体外和体内都表现出强大的抗癌活性:它能有效抑制8种不同癌细胞系的细胞活力,IC50值小于1µM;给予CuPT (1mg /kg);每3天灌胃一次)可显著抑制结直肠异种移植小鼠模型肿瘤生长,且无明显脏器损伤。cupt诱导的HCT116细胞毒性可以通过使用雷帕霉素或厄尔平衡盐溶液(EBSS)增强自噬来逆转。此外,我们证明CuPT诱导了一种新的铜依赖性细胞死亡,即癌细胞的铜增生。总之,这项研究提出了第一个铜复合物ATG4B抑制剂CuPT,这是一种可以进一步开发用于治疗多种癌症的铜化合物。
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引用次数: 0
A phase III clinical trial of monthly minodronate in the treatment of Chinese postmenopausal women with osteoporosis. 米诺膦酸钠治疗绝经后骨质疏松症的III期临床研究
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-10-01 DOI: 10.1038/s41401-025-01661-0
Hao Zhang, Ya-Nan Huo, Ya-Wei Zhang, Zhi-Feng Cheng, Xiao-Jing Wang, Jun Chen, Qi-Fu Li, Xin-Hua Xiao, Li-Zhen Lan, Xin-Long Ma, Liu-Jun Fu, Xiao-Pan Chen, Ling-Qing Yuan, Fang-Jiang Xu, Li You, Jin-Luo Cheng, Dun Hong, Fei Hua, Li Mao, Guo-Xi Jin, Guan-Feng Yao, Ya-Jun Bing, Gui-Jie Xie, Ying Yang, Jin Xu, Ying Zhang, Wei Zhang, Yue Ding, Guo-Ping Cai, Hui-Min Zhou, Cheng-Yun Liu, Jian-Xiang Zhang, Zhong-Min Zhao, Bu-Jun Zhuang, Xiao Cheng, Zhen-Lin Zhang

To date, monthly oral bisphosphonates have not been available in China. In this randomized, double blind, positive-controlled, multicenter phase III clinical trial, we compared the efficacy and safety of monthly minodronate versus weekly alendronate in the treatment of Chinese postmenopausal women with osteoporosis. A total of 548 participants were screened across 31 study centers, of which 330 participants were randomized into two groups: the experimental group (n = 165) received oral minodronate (50 mg/tablet once every four weeks) and alendronate placebo (once weekly), while the positive control group (n = 165) received oral alendronate (70 mg/tablet once weekly) and minodronate placebo (once every four weeks) for a duration of 48 weeks. The bone mineral density (BMD) of the lumbar spine, femoral neck and total hip were measured using dual-energy X-ray absorptiometry (DXA) at baseline and at 24 and 48 weeks. At the end of treatments, the experimental group exhibited a mean increase (SD) in BMD above the baseline at the lumbar spine, femoral neck and total hip of 4.61% (4.613%), 3.04% (4.034%) and 3.40% (3.569%), respectively, compared with those of 4.55% (3.753%), 1.86% (3.592%) and 2.30% (4.838%) in the control group. All improvements from the baseline in the two groups were statistically significant. The monthly minodronate did not cause new safety risks compared with alendronate. This study demonstrates that monthly minodronate administration is non-inferior to weekly alendronate in terms of therapeutic efficacy, while maintaining a comparable safety profile. Furthermore, the monthly dosing schedule of minodronate may significantly enhance medication adherence among osteoporosis patients, potentially improving long-term treatment outcomes.

到目前为止,每月口服双膦酸盐在中国还没有。在这项随机、双盲、阳性对照、多中心III期临床试验中,我们比较了每月米诺膦酸钠与每周阿仑膦酸钠治疗中国绝经后骨质疏松症妇女的疗效和安全性。在31个研究中心共筛选了548名参与者,其中330名参与者被随机分为两组:实验组(n = 165)接受口服米诺膦酸钠(50 mg/片,每四周一次)和阿仑膦酸钠安慰剂(每周一次),而阳性对照组(n = 165)接受口服阿仑膦酸钠(70 mg/片,每周一次)和米诺膦酸钠安慰剂(每四周一次),持续48周。采用双能x线骨密度仪(DXA)在基线、24周和48周测量腰椎、股骨颈和全髋的骨密度(BMD)。治疗结束时,实验组腰椎、股骨颈和全髋的骨密度比基线平均增加4.61%(4.613%)、3.04%(4.034%)和3.40%(3.569%),对照组分别为4.55%(3.753%)、1.86%(3.592%)和2.30%(4.838%)。两组较基线的所有改善均具有统计学意义。与阿仑膦酸钠相比,每月服用米诺膦酸钠没有产生新的安全风险。这项研究表明,就治疗效果而言,每月服用米诺膦酸钠并不逊于每周服用阿仑膦酸钠,同时保持相当的安全性。此外,米诺膦酸钠的每月给药计划可能会显著提高骨质疏松症患者的药物依从性,潜在地改善长期治疗结果。
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引用次数: 0
HER3 upregulation reduces DS-8201 sensitivity in HER2-positive tumor cells by ATR/CHK1/FoxO1 signaling cascade. HER3上调通过ATR/CHK1/FoxO1信号级联降低her2阳性肿瘤细胞中DS-8201的敏感性。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-09-10 DOI: 10.1038/s41401-025-01647-y
Wen-Jing Li, Kai-Ge Kang, Yu-Xiang Zhang, Xin-Xin Zhao, Xi Zhu, Jiao Tang, Yong-Peng Li, Hao-Yu Fu, Qing Yao, Lei Wang, Li-Guang Lou

The anti-HER2 antibody‒drug conjugate (ADC) DS-8201 presents new hope for patients with advanced HER2-positive tumors. Its clinical application, however, is hindered by serious adverse reactions and reduced efficacy following long-term treatment. In this study, we investigated the factors influencing the sensitivity of DS-8201 and developed effective combination regimens to optimize its therapeutic efficacy. We showed that HER3 upregulation diminished the sensitivity of HER2-positive tumor cells to DS-8201. We found that DS-8201 treatment activated DNA damage repair responses in BT-474 cells, in which the ATR kinase pathway induced the expression of the HER3 transcription factor FoxO1, leading to increased HER3 levels. This process was triggered by the payload component of DS-8201, the topoisomerase I inhibitor DXd, rather than the antibody. Based on this finding, we showed that combining DS-8201 with either a HER3-targeting antibody (SIBP-03) or an ATR inhibitor (BAY1895344) resulted in significant synergistic antitumor efficacy without substantial toxicity in vitro or in vivo. Overall, this study revealed that the ATR/FoxO1/HER3 pathway plays a critical role in modulating the efficacy of DS-8201, suggesting that combining DS-8201 with ATR or HER3 inhibition represents a promising therapeutic strategy for HER2-positive cancers.

抗her2抗体-药物偶联物(ADC) DS-8201为晚期her2阳性肿瘤患者带来了新的希望。然而,其临床应用受到严重不良反应和长期治疗后疗效降低的阻碍。本研究探讨影响DS-8201敏感性的因素,并制定有效的联合用药方案,优化其治疗效果。我们发现HER3上调降低了her2阳性肿瘤细胞对DS-8201的敏感性。我们发现,DS-8201处理激活了BT-474细胞的DNA损伤修复反应,其中ATR激酶途径诱导HER3转录因子FoxO1的表达,导致HER3水平升高。这个过程是由DS-8201的有效载荷成分,拓扑异构酶I抑制剂DXd触发的,而不是抗体。基于这一发现,我们发现将DS-8201与her3靶向抗体(SIBP-03)或ATR抑制剂(BAY1895344)联合使用可产生显著的协同抗肿瘤效果,且在体内和体外均无明显毒性。总的来说,本研究揭示了ATR/FoxO1/HER3通路在调节DS-8201的疗效中起着关键作用,这表明DS-8201联合ATR或HER3抑制是治疗her2阳性癌症的一种有希望的治疗策略。
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引用次数: 0
Fumarate hydratase ameliorates pressure overload induced cardiac remodeling by controlling Elovl7-mediated biosynthesis of unsaturated fatty acids. 富马酸水合酶通过控制elovl7介导的不饱和脂肪酸的生物合成来改善压力过载引起的心脏重构。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-09-12 DOI: 10.1038/s41401-025-01637-0
Lan-Lan Li, Chao-Jun Sun, Xiao-Tong Mo, Yun Xing, Tong Zhang, Heng Zhang, Nan Zhao, Xiao-Feng Zeng, Sha-Sha Wang, Yan-Yan Meng, Sai-Yang Xie, Wei Deng

Pathological cardiac hypertrophy as a major contributor to heart failure is characterized by complicated mechanisms. Fumarate hydratase (FH) is a crucial enzyme in the tricarboxylic acid cycle. FH mutations and dysfunction have been implicated in various pathological processes including hereditary leiomyomatosis and renal cell cancer, neurodegenerative diseases, metabolic syndrome and cardiovascular diseases. In this study we investigated the role of FH in cardiac hypertrophy. Cardiac hypertrophy was induced in mice by transverse aortic constriction (TAC) surgery as well as in neonatal rat cardiomyocytes (NRCMs) by phenylephrine (PE) stimulation. We showed that the expression levels of FH were gradually increased with development of cardiac hypertrophy in TAC mice. Cardiomyocyte-specific overexpression of FH by intravenous injection of recombinant adeno-associated virus serotype 9 (AAV9) carrying FH two weeks before TAC surgery prevented the morphological changes, cardiac dysfunction and remodeling in TAC mice; FH overexpression also significantly attenuated PE-induced hypertrophy in NRCMs along with suppressed expression of hypertrophic markers ANP, BNP and β-MHC. We demonstrated that FH overexpression alleviated TAC-induced mitochondrial structural damage in cardiomyocytes and facilitated metabolic remodeling. RNA sequencing and untargeted metabolomics revealed that FH overexpression mitigated myocardial remodeling and mitochondrial metabolism dysfunction in TAC mice mainly by suppressing the transcription factor SREBP and reducing the gene expression of elongation of very long chain fatty acids protein 7 (Elovl7). Overexpression of Elovl7 reversed the protective effects of FH in both TAC mice and PE-stimulated NRCMs. Knockdown of the transcription factor SREBP reduced Elovl7 expression, thereby exerting cardioprotective effects. In conclusion, we demonstrate that FH overexpression prevents cardiac hypertrophy in mice by regulating glucose and lipid metabolism through the malate-SREBP-Elovl7 pathway.

病理性心肌肥厚是导致心力衰竭的主要因素,其机制复杂。富马酸水合酶(FH)是三羧酸循环中的重要酶。FH突变和功能障碍涉及多种病理过程,包括遗传性平滑肌瘤病和肾细胞癌、神经退行性疾病、代谢综合征和心血管疾病。本研究探讨FH在心肌肥厚中的作用。横断主动脉缩窄术(TAC)诱导小鼠心肌肥厚,苯肾上腺素(PE)刺激新生大鼠心肌细胞(NRCMs)。我们发现,随着TAC小鼠心肌肥厚的发展,FH的表达水平逐渐升高。TAC术前2周静脉注射携带FH的重组腺相关病毒血清型9 (AAV9),心肌细胞特异性过表达FH,可防止TAC小鼠形态学改变、心功能障碍和重构;FH过表达还能显著减轻pe诱导的nrcm肥厚,同时抑制肥厚标志物ANP、BNP和β-MHC的表达。我们证明,FH过表达减轻了tac诱导的心肌细胞线粒体结构损伤,促进了代谢重塑。RNA测序和非靶向代谢组学研究显示,FH过表达主要通过抑制转录因子SREBP和降低超长链脂肪酸蛋白7 (Elovl7)的表达来减轻TAC小鼠心肌重构和线粒体代谢功能障碍。在TAC小鼠和pe刺激的nrcm中,Elovl7的过表达逆转了FH的保护作用。敲低转录因子SREBP可降低Elovl7的表达,从而发挥心脏保护作用。总之,我们证明FH过表达通过苹果酸- srebp - elovl7通路调节糖脂代谢,从而防止小鼠心脏肥厚。
{"title":"Fumarate hydratase ameliorates pressure overload induced cardiac remodeling by controlling Elovl7-mediated biosynthesis of unsaturated fatty acids.","authors":"Lan-Lan Li, Chao-Jun Sun, Xiao-Tong Mo, Yun Xing, Tong Zhang, Heng Zhang, Nan Zhao, Xiao-Feng Zeng, Sha-Sha Wang, Yan-Yan Meng, Sai-Yang Xie, Wei Deng","doi":"10.1038/s41401-025-01637-0","DOIUrl":"10.1038/s41401-025-01637-0","url":null,"abstract":"<p><p>Pathological cardiac hypertrophy as a major contributor to heart failure is characterized by complicated mechanisms. Fumarate hydratase (FH) is a crucial enzyme in the tricarboxylic acid cycle. FH mutations and dysfunction have been implicated in various pathological processes including hereditary leiomyomatosis and renal cell cancer, neurodegenerative diseases, metabolic syndrome and cardiovascular diseases. In this study we investigated the role of FH in cardiac hypertrophy. Cardiac hypertrophy was induced in mice by transverse aortic constriction (TAC) surgery as well as in neonatal rat cardiomyocytes (NRCMs) by phenylephrine (PE) stimulation. We showed that the expression levels of FH were gradually increased with development of cardiac hypertrophy in TAC mice. Cardiomyocyte-specific overexpression of FH by intravenous injection of recombinant adeno-associated virus serotype 9 (AAV9) carrying FH two weeks before TAC surgery prevented the morphological changes, cardiac dysfunction and remodeling in TAC mice; FH overexpression also significantly attenuated PE-induced hypertrophy in NRCMs along with suppressed expression of hypertrophic markers ANP, BNP and β-MHC. We demonstrated that FH overexpression alleviated TAC-induced mitochondrial structural damage in cardiomyocytes and facilitated metabolic remodeling. RNA sequencing and untargeted metabolomics revealed that FH overexpression mitigated myocardial remodeling and mitochondrial metabolism dysfunction in TAC mice mainly by suppressing the transcription factor SREBP and reducing the gene expression of elongation of very long chain fatty acids protein 7 (Elovl7). Overexpression of Elovl7 reversed the protective effects of FH in both TAC mice and PE-stimulated NRCMs. Knockdown of the transcription factor SREBP reduced Elovl7 expression, thereby exerting cardioprotective effects. In conclusion, we demonstrate that FH overexpression prevents cardiac hypertrophy in mice by regulating glucose and lipid metabolism through the malate-SREBP-Elovl7 pathway.</p>","PeriodicalId":6942,"journal":{"name":"Acta Pharmacologica Sinica","volume":" ","pages":"328-343"},"PeriodicalIF":8.4,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12811244/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145051631","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel anti-HER2 nanobody-drug conjugates with enhanced penetration of solid tumor and BBB, reduced systemic exposure and superior antitumor efficacy. 新型抗her2纳米药物偶联,增强实体瘤和血脑屏障的穿透,减少全身暴露和优越的抗肿瘤疗效。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-08-18 DOI: 10.1038/s41401-025-01634-3
Yue Wang, Liang Liu, Qi-Yu Yang, Ker Yu

Antibody-drug conjugate (ADC) represents a promising paradigm for tumor-targeted delivery of chemotherapy. Trastuzumab deruxtecan (T-Dxd/DS-8201), a second-generation HER2-ADC, has significantly improved treatment outcomes for breast cancer patients. But due to the large molecular weight, the performance of ADC is still limited by lower tumor penetration, insufficient BBB permeability, and prolonged systemic exposure to normal tissues. In this study, we generated novel anti-HER2 nanobodies (VHH2, VHH3) that exhibited outstanding target affinity and tumor inhibition. After i.v. injection, VHH3-Fc fusion distributed 4 to 5-fold higher in subcutaneous tumor and intracranial tumor compared with trastuzumab. VHH3-Fc and VHH3-ABD were also more penetrant in an in vitro BBB permeability assay. Site-specific conjugation of VHH3-Fc or VHH3-ABD fusions with anti-microtubule MMAE or anti-topoisomerase-1 Dxd payload produced nanobody-drug conjugates (NDCs) with highly potent and durable antitumor efficacy. When evaluated on the same linker-payload (GGFG-Dxd) dosages, VHH3-Fc-Dxd (DAR3.9) outperformed T-Dxd (DAR8) in both the subcutaneous and intracranial tumor models. Moreover, IHC staining and RNA-seq analysis of the treated tumor tissues revealed the involvement of the cGAS-STING-IFNs pathway in mediating the drug activity. Gene expression and protein function were more profoundly modulated by VHH3-Fc-Dxd than T-Dxd. Unlike the higher tumor distribution, the mouse serum PK study revealed a faster clearance (T1/2), reduced exposure (AUC), and higher volume distribution (Vz) for VHH3-Fc-Dxd relative to T-Dxd. Our results provide an example for the next generation HER2-NDC with substantially differentiated pharmacokinetics and pharmacodynamics profiles that will further benefit treatment outcomes and therapeutic windows.

抗体-药物偶联物(ADC)代表了肿瘤靶向化疗的一个有前途的范例。Trastuzumab deruxtecan (T-Dxd/DS-8201)是第二代her2 adc,显著改善了乳腺癌患者的治疗结果。但由于分子量较大,ADC的性能仍然受到肿瘤穿透性低、血脑屏障通透性不足以及长时间全身暴露于正常组织的限制。在这项研究中,我们产生了新的抗her2纳米体(VHH2, VHH3),它们具有出色的靶标亲和力和肿瘤抑制作用。静脉注射后,VHH3-Fc融合在皮下肿瘤和颅内肿瘤中的分布比曲妥珠单抗高4 - 5倍。在体外血脑屏障通透性试验中,VHH3-Fc和VHH3-ABD也具有更高的渗透性。VHH3-Fc或VHH3-ABD融合物与抗微管MMAE或抗拓扑异构酶-1 Dxd有效载荷的位点特异性结合产生了具有高效和持久抗肿瘤功效的纳米药物偶联物(NDCs)。在相同连接载荷(GGFG-Dxd)剂量下进行评估时,VHH3-Fc-Dxd (DAR3.9)在皮下和颅内肿瘤模型中的表现均优于T-Dxd (DAR8)。此外,经治疗的肿瘤组织的免疫组化染色和RNA-seq分析显示cGAS-STING-IFNs通路参与介导药物活性。与T-Dxd相比,VHH3-Fc-Dxd对基因表达和蛋白功能的调节更为深刻。与较高的肿瘤分布不同,小鼠血清PK研究显示,相对于T-Dxd, VHH3-Fc-Dxd的清除率更快(T1/2),暴露量减少(AUC),体积分布(Vz)更高。我们的研究结果为下一代HER2-NDC提供了一个具有显著差异的药代动力学和药效学特征的例子,这将进一步有利于治疗结果和治疗窗口。
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引用次数: 0
Harnessing deep statistical potential for biophysical scoring of protein-peptide interactions. 利用深层统计潜力对蛋白质-肽相互作用进行生物物理评分。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-10-01 DOI: 10.1038/s41401-025-01659-8
De-Jun Jiang, Hui-Feng Zhao, Hong-Yan Du, Yu Kang, Pei-Chen Pan, Zhen-Xing Wu, Yun-Dian Zeng, O-Din Zhang, Xiao-Rui Wang, Ji-Ke Wang, Yuan-Sheng Huang, Yi-Hao Zhao, Chang-Yu Hsieh, Dong-Sheng Cao, Hui-Yong Sun, Ting-Jun Hou

Protein-peptide interactions (PpIs) play a critical role in major cellular processes. Recently, a number of machine learning (ML)-based methods have been developed to predict PpIs, but most of them rely heavily on sequence data, limiting their ability to capture the generalized molecular interactions in three-dimensional (3D) space, which is crucial for understanding protein-peptide binding mechanisms and advancing peptide therapeutics. Protein-peptide docking approaches provide a feasible way to generate the 3D models of PpIs, but they often suffer from low-precision scoring functions (SFs). To address this, we developed DeepPpIScore, a novel SF for PpIs that employs unsupervised geometric deep learning coupled with a physics-inspired statistical potential. Trained solely on curated experimental structures without binding affinity data or classification labels, DeepPpIScore exhibits broad generalization across multiple tasks. Our comprehensive evaluations in bound and unbound peptide bioactive conformation prediction, binding affinity prediction, and binding pair identification reveal that DeepPpIScore outperforms or matches state-of-the-art baselines, including popular protein-protein SFs, ML-based methods, and AlphaFold-Multimer 2.3 (AF-M 2.3). Notably, DeepPpIScore achieves superior results in peptide binding mode prediction compared to AF-M 2.3. More importantly, DeepPpIScore offers interpretability in terms of hotspot preferences at protein interfaces, physics-informed noncovalent interactions, and protein-peptide binding energies.

蛋白-肽相互作用(PpIs)在主要的细胞过程中起着关键作用。最近,已经开发了许多基于机器学习(ML)的方法来预测ppi,但大多数方法严重依赖于序列数据,限制了它们在三维(3D)空间中捕获广义分子相互作用的能力,而三维(3D)空间对于理解蛋白质-肽结合机制和推进肽治疗至关重要。蛋白-肽对接方法为PpIs的三维模型生成提供了一种可行的方法,但其精度评分函数(sf)较低。为了解决这个问题,我们开发了DeepPpIScore,这是一款针对ppi的新颖SF,它采用了无监督的几何深度学习和物理启发的统计潜力。在没有绑定亲和数据或分类标签的情况下,仅对策划的实验结构进行训练,DeepPpIScore在多个任务中表现出广泛的泛化。我们在结合和非结合肽生物活性构象预测、结合亲和力预测和结合对鉴定方面的综合评估表明,DeepPpIScore优于或匹配最先进的基线,包括流行的蛋白蛋白sf、基于ml的方法和alphafold - multitimer 2.3 (AF-M 2.3)。值得注意的是,与af - m2.3相比,DeepPpIScore在肽结合模式预测方面取得了更好的结果。更重要的是,DeepPpIScore在蛋白质界面的热点偏好、物理信息非共价相互作用和蛋白质-肽结合能方面提供了可解释性。
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引用次数: 0
Antiemetic drug fosaprepitant exerts anti-tumor effects against NSCLC by targeting FAK to inhibit AKT and JNK/c-Jun pathways. 止吐药fosaprepitant通过靶向FAK抑制AKT和JNK/c-Jun通路对NSCLC发挥抗肿瘤作用。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-09-10 DOI: 10.1038/s41401-025-01645-0
Ying Wang, Yu-Na Shao, Chen-Kang Ma, Chen-Ying Shu, Yi-Hua Zhang, Di Lu, Hui-Ling Zhang, Jian-Jie Zhu, Yuan-Yuan Zeng, Jian-Jun Li, Zhao-Wei Yan, Ze-Yi Liu

Non-small cell lung cancer (NSCLC) is an aggressive malignancy with a poor prognosis. Abnormal expression of focal adhesion kinase (FAK) is closely linked to NSCLC progression, highlighting the need for effective FAK inhibitors in NSCLC treatment. In this study we conducted high-throughput virtual screening combined with cellular assays to identify potential FAK inhibitors for NSCLC treatment. Fosaprepitant (FOS), a clinical antiemetic drug, exhibited a high affinity for FAK with a KD value of 4.35 × 10⁻⁵ M. The direct interaction between FOS and FAK was confirmed by molecular docking, molecular dynamics, drug affinity responsive target stability and surface plasmon resonance analysis. We showed that FOS (15, 25 μM) dose-dependently inhibited the proliferation, migration and invasion of A549 and H1299 cells by targeting FAK. The IC50 values in inhibiting the cell viability at 24 h were 73.05 and 126.1 μM, respectively. Knockdown FAK reversed the inhibitory effects of FOS on A549 cells. Using RNA sequencing and Western blotting analysis, we demonstrated that FOS treatment led to downregulation of the AKT and JNK/c-Jun signaling pathways in A549 and H1299 cells. Importantly, point mutation analyses revealed that FOS primarily targeted the Y925 phosphorylation site on FAK. In A549 cells xenograft nude mouse model, administration of FOS (20, 60 mg/kg, i.p. every 2 d for 2 weeks) dose-dependently suppressed the tumor growth. Collectively, FOS exhibits significant anti-NSCLC activity both in vitro and in vivo by binding to FAK and inhibiting its phosphorylation, thereby blocking the AKT and JNK/c-Jun signaling pathways. These results suggest FOS as a novel FAK inhibitor for NSCLC treatment.

非小细胞肺癌(NSCLC)是一种预后不良的侵袭性恶性肿瘤。局灶黏着激酶(FAK)的异常表达与非小细胞肺癌的进展密切相关,因此在非小细胞肺癌治疗中需要有效的FAK抑制剂。在这项研究中,我们进行了高通量虚拟筛选结合细胞测定,以确定潜在的FAK抑制剂用于治疗NSCLC。Fosaprepitant (FOS)是一种临床止吐药,对FAK具有很高的亲和力,KD值为4.35 × 10⁻- 5 m。通过分子对接、分子动力学、药物亲和力响应靶稳定性和表面等离子体共振分析证实FOS与FAK之间存在直接的相互作用。结果表明,FOS(15、25 μM)通过靶向FAK,呈剂量依赖性地抑制A549和H1299细胞的增殖、迁移和侵袭。24 h抑制细胞活力的IC50值分别为73.05 μM和126.1 μM。敲除FAK逆转了FOS对A549细胞的抑制作用。通过RNA测序和Western blotting分析,我们发现FOS处理导致A549和H1299细胞中AKT和JNK/c-Jun信号通路下调。重要的是,点突变分析显示FOS主要靶向FAK上的Y925磷酸化位点。在A549细胞异种移植裸鼠模型中,FOS(20、60 mg/kg,每2 d灌胃,连续2周)呈剂量依赖性抑制肿瘤生长。总之,FOS通过与FAK结合并抑制其磷酸化,从而阻断AKT和JNK/c-Jun信号通路,在体外和体内均表现出显著的抗nsclc活性。这些结果提示FOS是一种新的FAK抑制剂,可用于治疗NSCLC。
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引用次数: 0
Selective recognition memory impairment in mitochondrial hydroxylase Clk1 mutant mice, rescued by antipsychotics. 线粒体羟化酶Clk1突变小鼠的选择性识别记忆障碍,由抗精神病药物拯救。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-09-01 DOI: 10.1038/s41401-025-01641-4
Zhi-Feng Shi, Zhe-Xiang Yu, Ling-Han Gu, Zhi-Xue Ma, Qin-Bo Chen, Li-Bin Wen, John L Waddington, Xue-Chu Zhen

Mitochondria are not only the most important organelles in eukaryotic cells that participate in energy metabolism, signal transduction, cell apoptosis and other physiological processes, but also essential regulators of neurodevelopment, neuroplasticity, survival and adult neurogenesis. The mitochondria-localized hydroxylase Clk-1 is involved in ubiquinone biosynthesis. Recent evidence shows that Clk1+/- mutant mice are resistant to morphine- and methamphetamine-induced conditioned place preference. Given the critical role of learning and memory in drug dependence, we herein explored whether and how Clk1 deficiency affected the cognitive processes in mice. We found that mutant Clk1 mice (Clk1+/-) exhibited recognition memory impairment in novel object recognition (NOR) and novel arm recognition (NAR) tests. In addition, we observed in Clk1+/- mutant mice a selective reduction in dendritic spine density in prefrontal cortex (PFC) but not in the hippocampus (HIP). The expression of brain-derived neurotrophic factor (BDNF) was also decreased in PFC but not in HIP. Furthermore, Clk1+/- mutant mice displayed impairment in the ERK/CREB signaling pathway in PFC that might underlie Clk1+/- mutation-induced changes in BDNF and dendritic morphology. Administration of antipsychotic drugs aripiprazole (0.3 mg·kg-1·d-1, i.p.) or risperidone (1 mg·kg-1·d-1, i.p.) for 7 days fully rescued Clk1 mutation-induced recognition memory deficits. This study provides primary evidence highlighting the role of mitochondrial Clk1 in the regulation of recognition memory and presents an informative model for investigating mitochondrial function in learning and memory.

线粒体不仅是真核细胞中最重要的细胞器,参与能量代谢、信号转导、细胞凋亡等生理过程,也是神经发育、神经可塑性、存活和成体神经发生的重要调节因子。线粒体定位的羟化酶Clk-1参与泛醌的生物合成。最近的证据表明,Clk1+/-突变小鼠对吗啡和甲基苯丙胺诱导的条件位置偏好具有抗性。鉴于学习和记忆在药物依赖中的关键作用,我们在此探讨Clk1缺乏是否以及如何影响小鼠的认知过程。我们发现突变Clk1小鼠(Clk1+/-)在新物体识别(NOR)和新手臂识别(NAR)测试中表现出识别记忆障碍。此外,在Clk1+/-突变小鼠中,我们观察到前额皮质(PFC)的树突棘密度选择性降低,而海马(HIP)则没有。脑源性神经营养因子(BDNF)的表达在PFC中降低,而在HIP中没有。此外,Clk1+/-突变小鼠在PFC中表现出ERK/CREB信号通路的损伤,这可能是Clk1+/-突变诱导BDNF和树突形态变化的基础。给予抗精神病药物阿立哌唑(0.3 mg·kg-1·d-1, i.p)或利培酮(1 mg·kg-1·d-1, i.p) 7天,完全恢复Clk1突变引起的识别记忆缺陷。本研究提供了主要证据,强调了线粒体Clk1在识别记忆调节中的作用,并为研究线粒体在学习和记忆中的功能提供了一个信息模型。
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引用次数: 0
USP3 stabilizes MIC19 by deubiquitination under hypoxic stress and promotes the progression of non-small cell lung cancer. 在缺氧胁迫下,USP3通过去泛素化稳定MIC19,促进非小细胞肺癌的进展。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-08-06 DOI: 10.1038/s41401-025-01625-4
Wen-Hao Zhao, Hua Huang, Chen Ding, Ze-Xia Zhao, Chao-Yi Jia, Ying-Jie Wang, Zi-Xuan Hu, Guan-Nan Wang, Yong-Wen Li, Jing-Hao Liu, Hong-Yu Liu, Jun Chen

Hypoxia is a common phenomenon in the microenvironment of solid tumors; mitochondria, as the site of cellular oxidative respiration, are among the first organelles to be affected under hypoxic conditions. Mitochondrial cristae organizing protein 19 (MIC19), a core component of the mitochondrial contact site and cristae organizing system (MICOS), is essential for preserving mitochondrial activity. In this study, we investigated the effects of hypoxia on MIC19 and its regulatory mechanisms in non-small cell lung cancer (NSCLC). We showed that the expression levels of MIC19 were significantly increased in NSCLC, which were associated with advanced stages and a poor prognosis in patients with NSCLC. We demonstrated that MIC19 promoted the proliferation and invasion of A549 and PC9 cells in vitro, and MIC19 played a crucial role in maintaining mitochondrial function. We revealed that USP3 mediated the hypoxia-induced upregulation of MIC19 expression in A549 and PC9 cells. In the hypoxic microenvironment, HIF-1α bound to the USP3 promoter region and promoted USP3 expression, which in turn stabilized MIC19 through K48-linked deubiquitination, thereby driving NSCLC progression. The role of MIC19 in NSCLC growth and progression was confirmed in nude mice bearing A549 xenograft tumors in vivo. In conclusion, under hypoxic conditions, USP3 stabilizes MIC19 through deubiquitination, thereby promoting NSCLC progression. This study reveals the HIF1α-USP3-MIC19 axis in NSCLC progression, providing a theoretical basis for future therapeutic strategies.

缺氧是实体瘤微环境中的常见现象;线粒体作为细胞氧化呼吸的场所,是缺氧条件下最先受到影响的细胞器之一。线粒体嵴组织蛋白19 (MIC19)是线粒体接触位点和嵴组织系统(MICOS)的核心成分,对维持线粒体活性至关重要。在这项研究中,我们研究了缺氧对非小细胞肺癌(NSCLC) MIC19的影响及其调控机制。我们发现MIC19的表达水平在NSCLC中显著升高,这与NSCLC患者的晚期和不良预后相关。我们证明了MIC19在体外促进A549和PC9细胞的增殖和侵袭,MIC19在维持线粒体功能中起着至关重要的作用。我们发现USP3介导缺氧诱导的A549和PC9细胞MIC19表达上调。在缺氧微环境下,HIF-1α结合USP3启动子区,促进USP3表达,进而通过k48连锁去泛素化稳定MIC19,从而推动NSCLC进展。MIC19在携带A549异种移植肿瘤的裸鼠体内的生长和进展中的作用得到了证实。总之,在缺氧条件下,USP3通过去泛素化作用稳定MIC19,从而促进NSCLC的进展。本研究揭示了hif - α- usp3 - mic19轴在NSCLC进展中的作用,为未来的治疗策略提供理论依据。
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引用次数: 0
Neuroglia and immune cells play different roles in neuroinflammation and neuroimmune response in post-stroke neural injury and repair. 神经胶质细胞和免疫细胞在脑卒中后神经损伤和修复的神经炎症和神经免疫反应中发挥不同的作用。
IF 8.4 1区 医学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 Epub Date: 2025-08-12 DOI: 10.1038/s41401-025-01640-5
Hui Guo, Wen-Cao Liu, Yan-Yun Sun, Xin-Chun Jin, Pan-Pan Geng

Neuroinflammation and immune responses mediated by glial cells and immune cells play dual roles in the neural injury and repair of ischemic stroke (IS): glial cells and immune cells primarily have a detrimental role in the acute phase of IS, while they mainly serve a reparative function in the chronic phase. Thus, suppressing neuroinflammation and immune responses driven by glial and immune cells represents a major strategy in the treatment of IS. In this review, we provide an overview of the molecular mechanisms of neuroinflammation and immune responses mediated by glial cells and immune cells at different stages after IS and highlight the roles of different glial cells and immune cells in post-IS neural injury and repair. We also summarize the relevant molecular targets and clinical application challenges for reducing neuroinflammation and immune responses to promote IS repair. Current evidence supports that PD-1/PD-L1, DAPK1, HDAC3-p65-cGAS-STING could be the targets. In addition, we discuss some treatment strategies for reducing neuroinflammation and immune responses such as traditional Chinese medicine (TCM) and natural product therapy, stem cell-based therapy and biomaterials, as well as current clinical trial progress and prospects.

神经胶质细胞和免疫细胞介导的神经炎症和免疫反应在缺血性卒中(IS)的神经损伤和修复中起双重作用:神经胶质细胞和免疫细胞在IS急性期主要起损害作用,而在慢性期主要起修复作用。因此,抑制神经炎症和由胶质细胞和免疫细胞驱动的免疫反应是治疗IS的主要策略。本文综述了IS后不同阶段神经胶质细胞和免疫细胞介导的神经炎症和免疫反应的分子机制,并重点介绍了不同胶质细胞和免疫细胞在IS后神经损伤和修复中的作用。我们还总结了减少神经炎症和免疫反应以促进IS修复的相关分子靶点和临床应用挑战。目前的证据支持PD-1/PD-L1、DAPK1、HDAC3-p65-cGAS-STING可能是靶点。此外,我们还讨论了一些减轻神经炎症和免疫反应的治疗策略,如中药和天然产物疗法、干细胞疗法和生物材料疗法,以及目前的临床试验进展和展望。
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引用次数: 0
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