Pub Date : 2024-07-17DOI: 10.1021/acsestengg.4c0014210.1021/acsestengg.4c00142
Sung Il Yu, Junbeom Jeon, Yong-Uk Shin* and Hyokwan Bae*,
Flow-electrode capacitive deionization (FCDI) has created a breakthrough toward a more stable desalination performance by adopting a flow-electrode compared to existing capacitive deionization and membrane capacitive deionization as a promising electrochemical water treatment technology. However, the FCDI technology requires investigation of various mechanisms pertaining to flow-electrode materials to achieve system optimization. Further, studies on applying machine learning to the FCDI technology have been scarcely reported. Our study aims to explore optimal algorithms via machine learning for predicting the salt adsorption capacity of FCDI processes and evaluate the feasibility of optimization applications. Concurrently, a comparative analysis was conducted through the performance model indicators of mean absolute error (MAE), mean squared error, and R2 for support vector machine, random forest, and artificial neural network (ANN) algorithms. Herein, we demonstrated that the optimal ANN-based model exhibited the highest predictive performance, achieving R2 and MAE values of 0.996 and 0.21 mg/g, respectively. Additionally, the Shapley additive explanations (SHAP) confirmed a trend in the contribution of influent concentration, aligning closely with the results of statistical analysis. Specifically, the change in voltage of the FCDI process serves as a key factor in determining salt adsorption efficiency. Moreover, a parallel comparison of the Pearson correlation coefficient and SHAP analyses suggests that the impact of voltage entails a nonlinear contribution within the realm of machine learning. Finally, to deploy a machine learning-driven ANN model system, we present multiple factors (e.g., weight of flow-electrodes, influent concentration, and voltages) as a reinforcement learning model for decision-making. This offers valuable insights and guidance for future operations of the FCDI process.
{"title":"Optimal Management Strategy for Salt Adsorption Capacity in Machine Learning-Based Flow-Electrode Capacitive Deionization Process","authors":"Sung Il Yu, Junbeom Jeon, Yong-Uk Shin* and Hyokwan Bae*, ","doi":"10.1021/acsestengg.4c0014210.1021/acsestengg.4c00142","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00142https://doi.org/10.1021/acsestengg.4c00142","url":null,"abstract":"<p >Flow-electrode capacitive deionization (FCDI) has created a breakthrough toward a more stable desalination performance by adopting a flow-electrode compared to existing capacitive deionization and membrane capacitive deionization as a promising electrochemical water treatment technology. However, the FCDI technology requires investigation of various mechanisms pertaining to flow-electrode materials to achieve system optimization. Further, studies on applying machine learning to the FCDI technology have been scarcely reported. Our study aims to explore optimal algorithms via machine learning for predicting the salt adsorption capacity of FCDI processes and evaluate the feasibility of optimization applications. Concurrently, a comparative analysis was conducted through the performance model indicators of mean absolute error (MAE), mean squared error, and <i>R</i><sup>2</sup> for support vector machine, random forest, and artificial neural network (ANN) algorithms. Herein, we demonstrated that the optimal ANN-based model exhibited the highest predictive performance, achieving <i>R</i><sup>2</sup> and MAE values of 0.996 and 0.21 mg/g, respectively. Additionally, the Shapley additive explanations (SHAP) confirmed a trend in the contribution of influent concentration, aligning closely with the results of statistical analysis. Specifically, the change in voltage of the FCDI process serves as a key factor in determining salt adsorption efficiency. Moreover, a parallel comparison of the Pearson correlation coefficient and SHAP analyses suggests that the impact of voltage entails a nonlinear contribution within the realm of machine learning. Finally, to deploy a machine learning-driven ANN model system, we present multiple factors (e.g., weight of flow-electrodes, influent concentration, and voltages) as a reinforcement learning model for decision-making. This offers valuable insights and guidance for future operations of the FCDI process.</p>","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141955524","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Herein, a ball-milled composite mineral derived from shell powder and phosphate rock (BSPR) was innovatively coupled with smooth vetch (SV) planting to remediate Cd-polluted soil. The results showed that BSPR coupled with SV could reduce the bioavailability of Cd in soil by 68.1%, which was 2.2 and 3.4 times those of BSPR (31.1%) and SV (20.0%) alone, respectively. The outstanding passivation performance was confirmed to be due to the synergistic effect of BSPR and SV. Specifically, the employment of BSPR not only increased the biomass of SV but also promoted its decomposition, which directly led to the conversion of SV into more humic acid (HA). Under the action of HA, more calcium and phosphorus were released by BSPR and combined with Cd to form stable compounds (e.g., Cd3(PO4)2, Cd5(PO4)3Cl, and CdnCa5–n(PO4)3OH). Amazingly, due to the excellent performance of synergetic BSPR and SV on Cd passivation and soil improvement, the Cd content in pepper fruit decreased by 38.2% (6.3 times that of SV), and the fresh weight and Ca content of pepper fruit were enhanced by 28.2% and 43.4% (6.7 and 22.8 times that of SV, respectively). Overall, this study provided a novel strategy, i.e., green manure coupled with mineral, for simultaneous remediation of Cd-contaminated farmland and enhancement of pepper’s yield and quality, thus achieving “killing three birds with one stone”.
{"title":"Smooth Vetch (Vicia villosa var.) Coupled with Ball-Milled Composite Mineral Derived from Shell Powder and Phosphate Rock for Remediation of Cadmium-Polluted Farmland: Insights into Synergetic Mechanisms","authors":"Jianhua Qu, Yuhui Li, Fuxuan Bi, Xiaoyang Liu, Zonghao Dong, Hongli Fan, Mei Yin, Libo Fu, Weidong Cao, Ying Zhang","doi":"10.1021/acsestengg.4c00177","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00177","url":null,"abstract":"Herein, a ball-milled composite mineral derived from shell powder and phosphate rock (BSPR) was innovatively coupled with smooth vetch (SV) planting to remediate Cd-polluted soil. The results showed that BSPR coupled with SV could reduce the bioavailability of Cd in soil by 68.1%, which was 2.2 and 3.4 times those of BSPR (31.1%) and SV (20.0%) alone, respectively. The outstanding passivation performance was confirmed to be due to the synergistic effect of BSPR and SV. Specifically, the employment of BSPR not only increased the biomass of SV but also promoted its decomposition, which directly led to the conversion of SV into more humic acid (HA). Under the action of HA, more calcium and phosphorus were released by BSPR and combined with Cd to form stable compounds (e.g., Cd<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub>, Cd<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>Cl, and Cd<sub><i>n</i></sub>Ca<sub>5–<i>n</i></sub>(PO<sub>4</sub>)<sub>3</sub>OH). Amazingly, due to the excellent performance of synergetic BSPR and SV on Cd passivation and soil improvement, the Cd content in pepper fruit decreased by 38.2% (6.3 times that of SV), and the fresh weight and Ca content of pepper fruit were enhanced by 28.2% and 43.4% (6.7 and 22.8 times that of SV, respectively). Overall, this study provided a novel strategy, i.e., green manure coupled with mineral, for simultaneous remediation of Cd-contaminated farmland and enhancement of pepper’s yield and quality, thus achieving “killing three birds with one stone”.","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.1,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141745685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-16DOI: 10.1021/acsestengg.4c0017710.1021/acsestengg.4c00177
Jianhua Qu, Yuhui Li, Fuxuan Bi, Xiaoyang Liu, Zonghao Dong, Hongli Fan, Mei Yin, Libo Fu, Weidong Cao and Ying Zhang*,
Herein, a ball-milled composite mineral derived from shell powder and phosphate rock (BSPR) was innovatively coupled with smooth vetch (SV) planting to remediate Cd-polluted soil. The results showed that BSPR coupled with SV could reduce the bioavailability of Cd in soil by 68.1%, which was 2.2 and 3.4 times those of BSPR (31.1%) and SV (20.0%) alone, respectively. The outstanding passivation performance was confirmed to be due to the synergistic effect of BSPR and SV. Specifically, the employment of BSPR not only increased the biomass of SV but also promoted its decomposition, which directly led to the conversion of SV into more humic acid (HA). Under the action of HA, more calcium and phosphorus were released by BSPR and combined with Cd to form stable compounds (e.g., Cd3(PO4)2, Cd5(PO4)3Cl, and CdnCa5–n(PO4)3OH). Amazingly, due to the excellent performance of synergetic BSPR and SV on Cd passivation and soil improvement, the Cd content in pepper fruit decreased by 38.2% (6.3 times that of SV), and the fresh weight and Ca content of pepper fruit were enhanced by 28.2% and 43.4% (6.7 and 22.8 times that of SV, respectively). Overall, this study provided a novel strategy, i.e., green manure coupled with mineral, for simultaneous remediation of Cd-contaminated farmland and enhancement of pepper’s yield and quality, thus achieving “killing three birds with one stone”.
{"title":"Smooth Vetch (Vicia villosa var.) Coupled with Ball-Milled Composite Mineral Derived from Shell Powder and Phosphate Rock for Remediation of Cadmium-Polluted Farmland: Insights into Synergetic Mechanisms","authors":"Jianhua Qu, Yuhui Li, Fuxuan Bi, Xiaoyang Liu, Zonghao Dong, Hongli Fan, Mei Yin, Libo Fu, Weidong Cao and Ying Zhang*, ","doi":"10.1021/acsestengg.4c0017710.1021/acsestengg.4c00177","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00177https://doi.org/10.1021/acsestengg.4c00177","url":null,"abstract":"<p >Herein, a ball-milled composite mineral derived from shell powder and phosphate rock (BSPR) was innovatively coupled with smooth vetch (SV) planting to remediate Cd-polluted soil. The results showed that BSPR coupled with SV could reduce the bioavailability of Cd in soil by 68.1%, which was 2.2 and 3.4 times those of BSPR (31.1%) and SV (20.0%) alone, respectively. The outstanding passivation performance was confirmed to be due to the synergistic effect of BSPR and SV. Specifically, the employment of BSPR not only increased the biomass of SV but also promoted its decomposition, which directly led to the conversion of SV into more humic acid (HA). Under the action of HA, more calcium and phosphorus were released by BSPR and combined with Cd to form stable compounds (e.g., Cd<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub>, Cd<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>Cl, and Cd<sub><i>n</i></sub>Ca<sub>5–<i>n</i></sub>(PO<sub>4</sub>)<sub>3</sub>OH). Amazingly, due to the excellent performance of synergetic BSPR and SV on Cd passivation and soil improvement, the Cd content in pepper fruit decreased by 38.2% (6.3 times that of SV), and the fresh weight and Ca content of pepper fruit were enhanced by 28.2% and 43.4% (6.7 and 22.8 times that of SV, respectively). Overall, this study provided a novel strategy, i.e., green manure coupled with mineral, for simultaneous remediation of Cd-contaminated farmland and enhancement of pepper’s yield and quality, thus achieving “killing three birds with one stone”.</p>","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141954871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-13DOI: 10.1021/acsestengg.4c0011510.1021/acsestengg.4c00115
Huachuan Feng, Yilin Wang, Xiaofeng Wang, Nan Li, Qiuyang Li, Jin Li, Xiaoming Chen, Qing Wang* and Wenkun Zhu*,
The addition of soil amendments to facilitate plant-based remediation of soil contaminated with radioactive nuclides is considered a promising approach. Here, we tested different levels of biochar to help clean uranium-contaminated soil in the potted plants. Adding 1% biochar had the best results in deactivating uranium, increasing soil enzyme activity, and promoting ryegrass growth. Microbiological and metabolomic analysis further revealed that 1 wt % biochar significantly enhanced the abundance of microorganisms such as Actinobacteriota and Myxococcota and accelerated the production of differential metabolites such as lipids and lipid-like molecules, organic acids and derivatives, and organic oxygen compounds. The analysis of biological and nonbiological interaction networks indicates that the coordinated interaction between bacteria, enzymes, and metabolites significantly improves the expression level of the ABC transporter’s metabolic pathway. This enhances the resistance of living cells to uranium and maintains system homeostasis under uranium stress. This study provides an example of the application of biochar-assisted phytoremediation and offers theoretical guidance for the remediation of soil contaminated with radioactive nuclides.
{"title":"Impact of Biochar Addition Levels on Remediation of Uranium-Stressed Soil: Evidence from 16S rDNA and Metabolomics","authors":"Huachuan Feng, Yilin Wang, Xiaofeng Wang, Nan Li, Qiuyang Li, Jin Li, Xiaoming Chen, Qing Wang* and Wenkun Zhu*, ","doi":"10.1021/acsestengg.4c0011510.1021/acsestengg.4c00115","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00115https://doi.org/10.1021/acsestengg.4c00115","url":null,"abstract":"<p >The addition of soil amendments to facilitate plant-based remediation of soil contaminated with radioactive nuclides is considered a promising approach. Here, we tested different levels of biochar to help clean uranium-contaminated soil in the potted plants. Adding 1% biochar had the best results in deactivating uranium, increasing soil enzyme activity, and promoting ryegrass growth. Microbiological and metabolomic analysis further revealed that 1 wt % biochar significantly enhanced the abundance of microorganisms such as Actinobacteriota and Myxococcota and accelerated the production of differential metabolites such as lipids and lipid-like molecules, organic acids and derivatives, and organic oxygen compounds. The analysis of biological and nonbiological interaction networks indicates that the coordinated interaction between bacteria, enzymes, and metabolites significantly improves the expression level of the ABC transporter’s metabolic pathway. This enhances the resistance of living cells to uranium and maintains system homeostasis under uranium stress. This study provides an example of the application of biochar-assisted phytoremediation and offers theoretical guidance for the remediation of soil contaminated with radioactive nuclides.</p>","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2024-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141954854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-13DOI: 10.1021/acsestengg.4c00115
Huachuan Feng, Yilin Wang, Xiaofeng Wang, Nan Li, Qiuyang Li, Jin Li, Xiaoming Chen, Qing Wang, Wenkun Zhu
The addition of soil amendments to facilitate plant-based remediation of soil contaminated with radioactive nuclides is considered a promising approach. Here, we tested different levels of biochar to help clean uranium-contaminated soil in the potted plants. Adding 1% biochar had the best results in deactivating uranium, increasing soil enzyme activity, and promoting ryegrass growth. Microbiological and metabolomic analysis further revealed that 1 wt % biochar significantly enhanced the abundance of microorganisms such as Actinobacteriota and Myxococcota and accelerated the production of differential metabolites such as lipids and lipid-like molecules, organic acids and derivatives, and organic oxygen compounds. The analysis of biological and nonbiological interaction networks indicates that the coordinated interaction between bacteria, enzymes, and metabolites significantly improves the expression level of the ABC transporter’s metabolic pathway. This enhances the resistance of living cells to uranium and maintains system homeostasis under uranium stress. This study provides an example of the application of biochar-assisted phytoremediation and offers theoretical guidance for the remediation of soil contaminated with radioactive nuclides.
{"title":"Impact of Biochar Addition Levels on Remediation of Uranium-Stressed Soil: Evidence from 16S rDNA and Metabolomics","authors":"Huachuan Feng, Yilin Wang, Xiaofeng Wang, Nan Li, Qiuyang Li, Jin Li, Xiaoming Chen, Qing Wang, Wenkun Zhu","doi":"10.1021/acsestengg.4c00115","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00115","url":null,"abstract":"The addition of soil amendments to facilitate plant-based remediation of soil contaminated with radioactive nuclides is considered a promising approach. Here, we tested different levels of biochar to help clean uranium-contaminated soil in the potted plants. Adding 1% biochar had the best results in deactivating uranium, increasing soil enzyme activity, and promoting ryegrass growth. Microbiological and metabolomic analysis further revealed that 1 wt % biochar significantly enhanced the abundance of microorganisms such as Actinobacteriota and Myxococcota and accelerated the production of differential metabolites such as lipids and lipid-like molecules, organic acids and derivatives, and organic oxygen compounds. The analysis of biological and nonbiological interaction networks indicates that the coordinated interaction between bacteria, enzymes, and metabolites significantly improves the expression level of the ABC transporter’s metabolic pathway. This enhances the resistance of living cells to uranium and maintains system homeostasis under uranium stress. This study provides an example of the application of biochar-assisted phytoremediation and offers theoretical guidance for the remediation of soil contaminated with radioactive nuclides.","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.1,"publicationDate":"2024-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141608585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Enzyme catalysis has shown its great power in dealing with global poly(ethylene terephthalate) (PET) waste. However, it is still challenging to design a super enzyme that can treat the sheer volume of worldwide PET waste. Without a complete understanding of the catalytic mechanism, it will be difficult to reach this important goal. Here, we systematically study the PET depolymerization mechanism catalyzed by structurally different hydrolases. The role of fleeting chiral intermediates was proved to be crucial. We observed different prochiral selectivities among these PET hydrolases. While most hydrolases favor Si-face binding, a few hydrolases (e.g., Humicola insolens cutinase) mainly adapt Re-face binding. Interestingly, we found that Si-face binding leads to higher activity than Re-face binding in all of the studied hydrolases. This Si-face selectivity originates from the difficulty of proton transfer from catalytic histidine residue to the substrate and the less stability of the oxyanion hole. Since the Si-face binding ratio ranges from 0 to 95%, we infer that all these hydrolases are not perfectly evolved to degrade PET. Our in silico results highlight that enlarging binding site residues (e.g., Leu66 and Asn69) will enhance enzymatic depolymerization, which was further confirmed by our in vitro experiments where both Leu66Phe and Asn69Phe show significantly increased PET hydrolysis activity. Hopefully, this work will aid the future rational design of super enzymes to fight PET pollution.
酶催化在处理全球聚对苯二甲酸乙二酯(PET)废物方面显示出巨大的威力。然而,要设计出一种能处理全球大量 PET 废弃物的超级酶,仍然具有挑战性。如果不全面了解催化机理,就很难实现这一重要目标。在这里,我们系统地研究了结构不同的水解酶催化 PET 解聚的机理。事实证明,转瞬即逝的手性中间体的作用至关重要。我们观察到这些 PET水解酶具有不同的手性选择性。大多数水解酶倾向于 Si 面结合,而少数水解酶(如 Humicola insolens cutinase)则主要适应 Re 面结合。有趣的是,我们发现在所有研究的水解酶中,硅面结合比反面结合具有更高的活性。这种硅面选择性源于质子难以从催化组氨酸残基转移到底物以及氧阴离子孔的稳定性较低。由于硅面结合率从 0% 到 95% 不等,我们推断所有这些水解酶在降解 PET 方面都没有完全进化。我们的硅学研究结果表明,扩大结合位点残基(如 Leu66 和 Asn69)将增强酶解聚作用,体外实验也进一步证实了这一点,在体外实验中,Leu66Phe 和 Asn69Phe 都显示 PET 的水解活性显著增强。希望这项工作有助于今后合理设计超级酶来对抗 PET 污染。
{"title":"Prochiral Selectivity in Enzymatic Polyethylene Terephthalate Depolymerization Revealed by Computational Modeling","authors":"Mingna Zheng, Xiaomin Zhu, Yanwei Li, Qingzhu Zhang, Weiliang Dong, Wenxing Wang","doi":"10.1021/acsestengg.4c00253","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00253","url":null,"abstract":"Enzyme catalysis has shown its great power in dealing with global poly(ethylene terephthalate) (PET) waste. However, it is still challenging to design a super enzyme that can treat the sheer volume of worldwide PET waste. Without a complete understanding of the catalytic mechanism, it will be difficult to reach this important goal. Here, we systematically study the PET depolymerization mechanism catalyzed by structurally different hydrolases. The role of fleeting chiral intermediates was proved to be crucial. We observed different prochiral selectivities among these PET hydrolases. While most hydrolases favor <i>Si</i>-face binding, a few hydrolases (e.g., <i>Humicola insolens</i> cutinase) mainly adapt <i>Re</i>-face binding. Interestingly, we found that <i>Si</i>-face binding leads to higher activity than <i>Re</i>-face binding in all of the studied hydrolases. This <i>Si</i>-face selectivity originates from the difficulty of proton transfer from catalytic histidine residue to the substrate and the less stability of the oxyanion hole. Since the <i>Si</i>-face binding ratio ranges from 0 to 95%, we infer that all these hydrolases are not perfectly evolved to degrade PET. Our in silico results highlight that enlarging binding site residues (e.g., Leu66 and Asn69) will enhance enzymatic depolymerization, which was further confirmed by our in vitro experiments where both Leu66Phe and Asn69Phe show significantly increased PET hydrolysis activity. Hopefully, this work will aid the future rational design of super enzymes to fight PET pollution.","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.1,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141567481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Enzyme catalysis has shown its great power in dealing with global poly(ethylene terephthalate) (PET) waste. However, it is still challenging to design a super enzyme that can treat the sheer volume of worldwide PET waste. Without a complete understanding of the catalytic mechanism, it will be difficult to reach this important goal. Here, we systematically study the PET depolymerization mechanism catalyzed by structurally different hydrolases. The role of fleeting chiral intermediates was proved to be crucial. We observed different prochiral selectivities among these PET hydrolases. While most hydrolases favor Si-face binding, a few hydrolases (e.g., Humicola insolens cutinase) mainly adapt Re-face binding. Interestingly, we found that Si-face binding leads to higher activity than Re-face binding in all of the studied hydrolases. This Si-face selectivity originates from the difficulty of proton transfer from catalytic histidine residue to the substrate and the less stability of the oxyanion hole. Since the Si-face binding ratio ranges from 0 to 95%, we infer that all these hydrolases are not perfectly evolved to degrade PET. Our in silico results highlight that enlarging binding site residues (e.g., Leu66 and Asn69) will enhance enzymatic depolymerization, which was further confirmed by our in vitro experiments where both Leu66Phe and Asn69Phe show significantly increased PET hydrolysis activity. Hopefully, this work will aid the future rational design of super enzymes to fight PET pollution.
酶催化在处理全球聚对苯二甲酸乙二酯(PET)废物方面显示出巨大的威力。然而,要设计出一种能处理全球大量 PET 废弃物的超级酶,仍然具有挑战性。如果不全面了解催化机理,就很难实现这一重要目标。在这里,我们系统地研究了结构不同的水解酶催化 PET 解聚的机理。事实证明,转瞬即逝的手性中间体的作用至关重要。我们观察到这些 PET水解酶具有不同的手性选择性。大多数水解酶倾向于 Si 面结合,而少数水解酶(如 Humicola insolens cutinase)则主要适应 Re 面结合。有趣的是,我们发现在所有研究的水解酶中,硅面结合比反面结合具有更高的活性。这种硅面选择性源于质子难以从催化组氨酸残基转移到底物以及氧阴离子孔的稳定性较低。由于硅面结合率从 0% 到 95% 不等,我们推断所有这些水解酶在降解 PET 方面都没有完全进化。我们的硅学研究结果表明,扩大结合位点残基(如 Leu66 和 Asn69)将增强酶解聚作用,体外实验也进一步证实了这一点,在体外实验中,Leu66Phe 和 Asn69Phe 都显示 PET 的水解活性显著增强。希望这项工作有助于今后合理设计超级酶来对抗 PET 污染。
{"title":"Prochiral Selectivity in Enzymatic Polyethylene Terephthalate Depolymerization Revealed by Computational Modeling","authors":"Mingna Zheng, Xiaomin Zhu, Yanwei Li*, Qingzhu Zhang, Weiliang Dong* and Wenxing Wang, ","doi":"10.1021/acsestengg.4c0025310.1021/acsestengg.4c00253","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00253https://doi.org/10.1021/acsestengg.4c00253","url":null,"abstract":"<p >Enzyme catalysis has shown its great power in dealing with global poly(ethylene terephthalate) (PET) waste. However, it is still challenging to design a super enzyme that can treat the sheer volume of worldwide PET waste. Without a complete understanding of the catalytic mechanism, it will be difficult to reach this important goal. Here, we systematically study the PET depolymerization mechanism catalyzed by structurally different hydrolases. The role of fleeting chiral intermediates was proved to be crucial. We observed different prochiral selectivities among these PET hydrolases. While most hydrolases favor <i>Si</i>-face binding, a few hydrolases (e.g., <i>Humicola insolens</i> cutinase) mainly adapt <i>Re</i>-face binding. Interestingly, we found that <i>Si</i>-face binding leads to higher activity than <i>Re</i>-face binding in all of the studied hydrolases. This <i>Si</i>-face selectivity originates from the difficulty of proton transfer from catalytic histidine residue to the substrate and the less stability of the oxyanion hole. Since the <i>Si</i>-face binding ratio ranges from 0 to 95%, we infer that all these hydrolases are not perfectly evolved to degrade PET. Our in silico results highlight that enlarging binding site residues (e.g., Leu66 and Asn69) will enhance enzymatic depolymerization, which was further confirmed by our in vitro experiments where both Leu66Phe and Asn69Phe show significantly increased PET hydrolysis activity. Hopefully, this work will aid the future rational design of super enzymes to fight PET pollution.</p>","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142228136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01DOI: 10.1021/acsestengg.4c00241
Li Gong, Jingting Chen, Lei Shen, Zaizhi Zhang, Chenyun Xia, Fei Wu, Yancai Yao, Chengshuai Liu, Liyuan Liang, Feng He
Nitridated zero-valent iron (N-ZVI) and its sulfidated counterpart (S–N-ZVI) are promising materials for groundwater remediation. The dechlorination performance of N-ZVI and S–N-ZVI is intricately linked to the specific N and S surface speciation, yet their roles in tuning the physicochemical characteristics, dechlorination reactivity, and electron selectivity of both particles remain unclear. In this study, we synthesized ZVIs using varied N and S agents, leading to the formation of different surface N species (iron nitrides (FexNy), pyridinic, and graphitic nitrogen) and sulfur species (FeS and FeS2). The trichloroethylene (TCE) dechlorination rate showed a linear correlation with FexNy content, indicating FexNy-mediated ZVI dechlorination. Hydrogen production capacity was, however, linearly correlated with pyridinic N. Electron paramagnetic resonance (EPR) analysis revealed that pyridinic N enhanced proton transfer processes, thereby facilitating atomic hydrogen generation. This was further supported by the reduced H/D kinetic isotope effects (KIEs) in N-ZVI (2.07) and S–N-ZVI (∼1) compared to unmodified ZVI (3.06) and noticeable mitigation of surface passivation in N-ZVI and S–N-ZVI at pH 9. FeS and FeS2 species minimized the hydrogen evolution reaction and removed the proton transfer limitation in TCE dechlorination. This magnifies the effect of FexNy and contributes to a synergistic interplay between nitridation and sulfidation in enhancing the dechlorination kinetics.
{"title":"Unveiling the Mechanistic Role of Surface Nitrogen and Sulfur in Boosting the Dechlorination Performance of Zero-Valent Iron","authors":"Li Gong, Jingting Chen, Lei Shen, Zaizhi Zhang, Chenyun Xia, Fei Wu, Yancai Yao, Chengshuai Liu, Liyuan Liang, Feng He","doi":"10.1021/acsestengg.4c00241","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00241","url":null,"abstract":"Nitridated zero-valent iron (N-ZVI) and its sulfidated counterpart (S–N-ZVI) are promising materials for groundwater remediation. The dechlorination performance of N-ZVI and S–N-ZVI is intricately linked to the specific N and S surface speciation, yet their roles in tuning the physicochemical characteristics, dechlorination reactivity, and electron selectivity of both particles remain unclear. In this study, we synthesized ZVIs using varied N and S agents, leading to the formation of different surface N species (iron nitrides (Fe<sub><i>x</i></sub>N<sub><i>y</i></sub>), pyridinic, and graphitic nitrogen) and sulfur species (FeS and FeS<sub>2</sub>). The trichloroethylene (TCE) dechlorination rate showed a linear correlation with Fe<sub><i>x</i></sub>N<sub><i>y</i></sub> content, indicating Fe<sub><i>x</i></sub>N<sub><i>y</i></sub>-mediated ZVI dechlorination. Hydrogen production capacity was, however, linearly correlated with pyridinic N. Electron paramagnetic resonance (EPR) analysis revealed that pyridinic N enhanced proton transfer processes, thereby facilitating atomic hydrogen generation. This was further supported by the reduced H/D kinetic isotope effects (KIEs) in N-ZVI (2.07) and S–N-ZVI (∼1) compared to unmodified ZVI (3.06) and noticeable mitigation of surface passivation in N-ZVI and S–N-ZVI at pH 9. FeS and FeS<sub>2</sub> species minimized the hydrogen evolution reaction and removed the proton transfer limitation in TCE dechlorination. This magnifies the effect of Fe<sub><i>x</i></sub>N<sub><i>y</i></sub> and contributes to a synergistic interplay between nitridation and sulfidation in enhancing the dechlorination kinetics.","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.1,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141549701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01DOI: 10.1021/acsestengg.4c0024110.1021/acsestengg.4c00241
Li Gong, Jingting Chen, Lei Shen, Zaizhi Zhang, Chenyun Xia, Fei Wu, Yancai Yao, Chengshuai Liu, Liyuan Liang and Feng He*,
Nitridated zero-valent iron (N-ZVI) and its sulfidated counterpart (S–N-ZVI) are promising materials for groundwater remediation. The dechlorination performance of N-ZVI and S–N-ZVI is intricately linked to the specific N and S surface speciation, yet their roles in tuning the physicochemical characteristics, dechlorination reactivity, and electron selectivity of both particles remain unclear. In this study, we synthesized ZVIs using varied N and S agents, leading to the formation of different surface N species (iron nitrides (FexNy), pyridinic, and graphitic nitrogen) and sulfur species (FeS and FeS2). The trichloroethylene (TCE) dechlorination rate showed a linear correlation with FexNy content, indicating FexNy-mediated ZVI dechlorination. Hydrogen production capacity was, however, linearly correlated with pyridinic N. Electron paramagnetic resonance (EPR) analysis revealed that pyridinic N enhanced proton transfer processes, thereby facilitating atomic hydrogen generation. This was further supported by the reduced H/D kinetic isotope effects (KIEs) in N-ZVI (2.07) and S–N-ZVI (∼1) compared to unmodified ZVI (3.06) and noticeable mitigation of surface passivation in N-ZVI and S–N-ZVI at pH 9. FeS and FeS2 species minimized the hydrogen evolution reaction and removed the proton transfer limitation in TCE dechlorination. This magnifies the effect of FexNy and contributes to a synergistic interplay between nitridation and sulfidation in enhancing the dechlorination kinetics.
{"title":"Unveiling the Mechanistic Role of Surface Nitrogen and Sulfur in Boosting the Dechlorination Performance of Zero-Valent Iron","authors":"Li Gong, Jingting Chen, Lei Shen, Zaizhi Zhang, Chenyun Xia, Fei Wu, Yancai Yao, Chengshuai Liu, Liyuan Liang and Feng He*, ","doi":"10.1021/acsestengg.4c0024110.1021/acsestengg.4c00241","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00241https://doi.org/10.1021/acsestengg.4c00241","url":null,"abstract":"<p >Nitridated zero-valent iron (N-ZVI) and its sulfidated counterpart (S–N-ZVI) are promising materials for groundwater remediation. The dechlorination performance of N-ZVI and S–N-ZVI is intricately linked to the specific N and S surface speciation, yet their roles in tuning the physicochemical characteristics, dechlorination reactivity, and electron selectivity of both particles remain unclear. In this study, we synthesized ZVIs using varied N and S agents, leading to the formation of different surface N species (iron nitrides (Fe<sub><i>x</i></sub>N<sub><i>y</i></sub>), pyridinic, and graphitic nitrogen) and sulfur species (FeS and FeS<sub>2</sub>). The trichloroethylene (TCE) dechlorination rate showed a linear correlation with Fe<sub><i>x</i></sub>N<sub><i>y</i></sub> content, indicating Fe<sub><i>x</i></sub>N<sub><i>y</i></sub>-mediated ZVI dechlorination. Hydrogen production capacity was, however, linearly correlated with pyridinic N. Electron paramagnetic resonance (EPR) analysis revealed that pyridinic N enhanced proton transfer processes, thereby facilitating atomic hydrogen generation. This was further supported by the reduced H/D kinetic isotope effects (KIEs) in N-ZVI (2.07) and S–N-ZVI (∼1) compared to unmodified ZVI (3.06) and noticeable mitigation of surface passivation in N-ZVI and S–N-ZVI at pH 9. FeS and FeS<sub>2</sub> species minimized the hydrogen evolution reaction and removed the proton transfer limitation in TCE dechlorination. This magnifies the effect of Fe<sub><i>x</i></sub>N<sub><i>y</i></sub> and contributes to a synergistic interplay between nitridation and sulfidation in enhancing the dechlorination kinetics.</p>","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142228015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ammonia inhibition often occurs during anaerobic digestion (AD) of the protein-rich substrate. Iron-containing substances were proved to be efficient in alleviating the ammonia stress. However, the mechanisms behind, especially the distinct impacts of different forms of iron materials, are not fully revealed. Here, the alleviating performances of FeCl3 and Fe3O4 on AD systems under ammonia stress were investigated. Moreover, the mechanisms behind these were revealed and compared at the transcriptional level. Results showed that FeCl3 and Fe3O4 additions with an equal amount of iron element content (1.29 mM) led to the increased cumulative biogas and methane yields under an ammonia concentration of 3 g/L. Furthermore, the addition of iron-containing substances alleviated the accumulation of volatile fatty acids (VFAs) and extracellular polymeric substances (soluble carbohydrates and protein) caused by ammonia stress, which also had an obvious positive effect on the electron transfer capability. Microbial analysis demonstrated that the microbes (e.g., orders Methanosarcinales, Clostridiales, and Syntrophobacterales) associated with direct interspecies electron transfer (DIET), syntrophic acetate oxidization, and degradation of organic compounds were enriched. Metatranscriptomic analysis showed that ammonia inhibited the AD process by disrupting cellular redox homeostasis, infecting the ATPase activity, affecting cellular energy supply, inhibiting methane-producing enzyme activity, and suppressing the expression of cell conductive structure genes. Meanwhile, the addition of FeCl3 and Fe3O4 enhanced the cellular basal metabolism and energy supply, as well as microbial electron transfer and enzymic activities on methanogenesis. Metatranscriptomic analysis indicated that the addition of free iron species (FeCl3) can relieve the ammonia stress on syntrophic propionate and acetate oxidizing bacteria, enhance DIET by stimulating the synthesis of c-type cytochrome, and thus promote methane production. Meanwhile, Fe3O4 may promote methane production by stimulating the expression of related genes and facilitating electron transfer in the AD system as a capacitor. Overall, the results demonstrated that ferric chloride and magnetite can alleviate the ammonia inhibition in the AD process of high-nitrogen waste through different mechanisms.
在厌氧消化(AD)富含蛋白质的基质时,经常会出现氨抑制现象。含铁物质被证明能有效缓解氨压力。然而,其背后的机理,尤其是不同形式的铁材料所产生的不同影响尚未完全揭示。本文研究了FeCl3和Fe3O4对氨胁迫下AD系统的缓解作用。此外,还从转录水平揭示并比较了其背后的机制。结果表明,在氨浓度为 3 克/升的条件下,添加铁元素含量相同(1.29 毫摩尔)的 FeCl3 和 Fe3O4 可提高沼气和甲烷的累积产量。此外,含铁物质的添加缓解了氨胁迫引起的挥发性脂肪酸(VFAs)和胞外高分子物质(可溶性碳水化合物和蛋白质)的积累,对电子传递能力也有明显的积极影响。微生物分析表明,与种间直接电子传递(DIET)、合成醋酸盐氧化和有机化合物降解相关的微生物(如甲烷弧菌目、梭杆菌目和合成芽孢杆菌目)富集。转录组学分析表明,氨通过破坏细胞氧化还原平衡、感染 ATP 酶活性、影响细胞能量供应、抑制产甲烷酶活性和抑制细胞传导结构基因的表达来抑制 AD 过程。同时,FeCl3 和 Fe3O4 的添加增强了细胞的基础代谢和能量供应,以及微生物的电子传递和产甲烷酶活性。转录组分析表明,添加游离铁(FeCl3)可缓解合成型丙酸盐和乙酸盐氧化菌的氨胁迫,通过刺激 c 型细胞色素的合成提高 DIET,从而促进甲烷的产生。同时,Fe3O4 作为电容器可刺激相关基因的表达,促进 AD 系统中的电子传递,从而促进甲烷的产生。总之,研究结果表明,氯化铁和磁铁矿可以通过不同的机制缓解高氮废物厌氧消化(AD)过程中的氨抑制作用。
{"title":"Distinct Mechanisms between Free Iron Species and Magnetite Addition in Anaerobic Digestion on Alleviating Ammonia Inhibition","authors":"Xiao-Feng Dai, Yanru Bai, Shu-Juan Lian, Xue-Jiao Qi, Kai Feng, Shan-Fei Fu, Rong-Bo Guo","doi":"10.1021/acsestengg.4c00171","DOIUrl":"https://doi.org/10.1021/acsestengg.4c00171","url":null,"abstract":"Ammonia inhibition often occurs during anaerobic digestion (AD) of the protein-rich substrate. Iron-containing substances were proved to be efficient in alleviating the ammonia stress. However, the mechanisms behind, especially the distinct impacts of different forms of iron materials, are not fully revealed. Here, the alleviating performances of FeCl<sub>3</sub> and Fe<sub>3</sub>O<sub>4</sub> on AD systems under ammonia stress were investigated. Moreover, the mechanisms behind these were revealed and compared at the transcriptional level. Results showed that FeCl<sub>3</sub> and Fe<sub>3</sub>O<sub>4</sub> additions with an equal amount of iron element content (1.29 mM) led to the increased cumulative biogas and methane yields under an ammonia concentration of 3 g/L. Furthermore, the addition of iron-containing substances alleviated the accumulation of volatile fatty acids (VFAs) and extracellular polymeric substances (soluble carbohydrates and protein) caused by ammonia stress, which also had an obvious positive effect on the electron transfer capability. Microbial analysis demonstrated that the microbes (e.g., orders <i>Methanosarcinales</i>, <i>Clostridiales</i>, and <i>Syntrophobacterales</i>) associated with direct interspecies electron transfer (DIET), syntrophic acetate oxidization, and degradation of organic compounds were enriched. Metatranscriptomic analysis showed that ammonia inhibited the AD process by disrupting cellular redox homeostasis, infecting the ATPase activity, affecting cellular energy supply, inhibiting methane-producing enzyme activity, and suppressing the expression of cell conductive structure genes. Meanwhile, the addition of FeCl<sub>3</sub> and Fe<sub>3</sub>O<sub>4</sub> enhanced the cellular basal metabolism and energy supply, as well as microbial electron transfer and enzymic activities on methanogenesis. Metatranscriptomic analysis indicated that the addition of free iron species (FeCl<sub>3</sub>) can relieve the ammonia stress on syntrophic propionate and acetate oxidizing bacteria, enhance DIET by stimulating the synthesis of c-type cytochrome, and thus promote methane production. Meanwhile, Fe<sub>3</sub>O<sub>4</sub> may promote methane production by stimulating the expression of related genes and facilitating electron transfer in the AD system as a capacitor. Overall, the results demonstrated that ferric chloride and magnetite can alleviate the ammonia inhibition in the AD process of high-nitrogen waste through different mechanisms.","PeriodicalId":7008,"journal":{"name":"ACS ES&T engineering","volume":null,"pages":null},"PeriodicalIF":7.1,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141507799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}