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Rational Optimization of an Aptamer Specific to the Surface of Lung-Cancer Cells Using Mathematical Modeling and Small-Angle X-ray Scattering 利用数学建模和小角 X 射线散射合理优化肺癌细胞表面特异性适配体
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600731
P. V. Artyushenko, I. A. Shchugoreva, O. S. Kolovskaya, A. V. Rogova, R. V. Moryachkov, V. N. Zabluda, T. N. Zamay, A. V. Krat, R. A. Zukov, F. N. Tomilin, A. S. Kichkailo

Aptamers, short oligonucleotides, are capable of high-affinity binding to targets due to their unique structure. Shortening the aptamer while maintaining the active site will increase the affinity and reduce the cost of synthesis. Using the example of the aptamer LC-224, a method for rational optimization of its length and verification of the validity of the developed approach is tested. The use of computer modeling and small-angle X‑ray scattering shows the possibility of optimizing the aptamer structure by removing nucleotides that do not participate in binding to the target. It is shown that truncation of the aptamer does not reduce the affinity and specificity of the DNA aptamer. Thus, theoretical and experimental studies demonstrate successful experience in optimizing the structure of a DNA aptamer by shortening it without compromising its affinity and specificity for its target.

适配体是一种短寡核苷酸,由于其独特的结构,能够与靶标高亲和力结合。在保持活性位点的同时缩短适配体的长度,可以提高亲和力并降低合成成本。我们以适配体 LC-224 为例,测试了合理优化其长度的方法,并验证了所开发方法的有效性。计算机建模和小角 X 射线散射的使用表明,可以通过去除不参与与目标物结合的核苷酸来优化适配体结构。研究表明,截短适配体不会降低 DNA 适配体的亲和力和特异性。因此,理论和实验研究证明,通过缩短 DNA 短接子来优化其结构,并不会降低其对目标物的亲和力和特异性,是一种成功的经验。
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引用次数: 0
Comparison of the Viscoelastic Properties and Plasticity of Early and Late Wood of Pine and Spruce by Continuous Stiffness Measurement during Nanoindentation 通过纳米压痕过程中的连续刚度测量比较松木和云杉早期和晚期木材的粘弹性能和塑性
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600433
A. I. Tyurin, V. V. Korenkov, A. A. Gusev, I. A. Vasyukova, M. A. Yunak

Abstract

Using a small oscillating load (continuous stiffness measurement, CSM), in addition to the main quasi-static load, we determine the hardness, Young’s modulus, storage and loss moduli, mechanical loss coefficient ((tan delta )), and the plasticity characteristics in various components of the nanostructure and microstructure of pine (Pinus sylvestris) and spruce (Picea abies) wood. The contribution of structures of different scales to the ratio of the viscoelastic properties of early and late wood in the composition of one annual ring is determined. The plasticity characteristic δА is determined, and the influence of an additional oscillating load on the dynamic parameters of wood is assessed.

摘要 除了主要的准静态载荷外,我们还利用小振荡载荷(连续刚度测量,CSM)测定了松树(Pinus sylvestris)和云杉(Picea abies)木材的硬度、杨氏模量、储存和损失模量、机械损失系数((tan delta ))以及纳米结构和微结构中各种成分的塑性特征。确定了不同尺度的结构对一个年轮组成中早期和晚期木材粘弹性能比例的贡献。确定了塑性特征δА,并评估了附加振荡载荷对木材动态参数的影响。
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引用次数: 0
Influence of Gold Glyconanoparticles on the Functioning of P-Glycoprotein In Vitro 金聚糖颗粒对体外糖蛋白功能的影响
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600482
M. A. Kopanitsa, I. V. Chernykh, A. V. Shchulkin, P. Yu. Mylnikov, A. Yu. Ershov, I. V. Lagoda, A. A. Martynenkov, E. N. Yakusheva

Abstract

The aim of the work is to evaluate the effect of gold nanoparticles with a surface modified with fucose (Au-Fuc), lactose (Au-Lac), and galactose (Au-Gal) residues on the functional activity and expression of the transporter protein P-glycoprotein (Pgp). The work is performed using Caco-2 and HEK293 cells, which are incubated for 2 and 8 h with solutions of Au-Fuc, Au-Lac, and Au-Gal in a nutrient medium (450 and 300 µg/mL, 700 and 490 µg/mL, and 400 and 250 μg/mL, respectively). The amount of Pgp on the membranes of the Caco-2 cells is determined by the western blot method. The Pgp activity is assessed by the accumulation of fexofenadine Fex (150 µM) in cells by high-performance liquid chromatography (HPLC) with mass detection. Au-Fuc and Au-Gal do not change the amount of Pgp; Au-Lac increases the transporter level by 1.9 and 1.8 times upon 2 and 8 h of incubation respectively. Au-Fuc, Au-Lac, and Au-Gal increase the Pgp content in cells upon 8 h of incubation by 2.6, 3.5, and 5.3 times, which indicates a decrease in Pgp activity. When particles are incubated with HEK293 cells, no increase in the Fex levels are detected, which indicates the absence of a nonspecific increase in membrane permeability. Thus, the tested gold nanoparticles reduce the functional activity of Pgp in vitro.

摘要 本研究旨在评估表面经岩藻糖(Au-Fuc)、乳糖(Au-Lac)和半乳糖(Au-Gal)残基修饰的金纳米粒子对转运蛋白 P-糖蛋白(Pgp)的功能活性和表达的影响。这项研究使用 Caco-2 和 HEK293 细胞,将它们与营养培养基中的 Au-Fuc、Au-Lac 和 Au-Gal 溶液(分别为 450 和 300 µg/mL、700 和 490 µg/mL、400 和 250 μg/mL)培养 2 和 8 小时。Caco-2 细胞膜上的 Pgp 量是通过 Western 印迹法测定的。Pgp 活性是通过质量检测的高效液相色谱法(HPLC)测定非索非那定 Fex(150 µM)在细胞中的积累来评估的。Au-Fuc 和 Au-Gal 不会改变 Pgp 的数量;Au-Lac 在培养 2 小时和 8 小时后会使转运体水平分别增加 1.9 倍和 1.8 倍。Au-Fuc、Au-Lac 和 Au-Gal 培养 8 小时后,细胞中的 Pgp 含量分别增加了 2.6、3.5 和 5.3 倍,这表明 Pgp 活性降低了。当颗粒与 HEK293 细胞培养时,没有检测到 Fex 含量的增加,这表明膜渗透性没有非特异性增加。因此,测试的金纳米粒子降低了体外 Pgp 的功能活性。
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引用次数: 0
Antibacterial and Low-Defect Graphene Ink Coatings 抗菌和低缺陷石墨烯墨水涂层
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600251
S. E. Dimitrieva, S. A. Baskakov, Yu. V. Baskakova

Abstract

An original method is developed for producing organic-based graphene ink by the micromechanical exfoliation of graphite in 1-methyl-2-pyrrolidone (NMP), followed by the isolation of graphene particles by changing the solvent and stabilization with ethylcellulose. It is shown that the yield of graphene particles by micromechanical exfoliation in NMP is more than 2 times higher than the same parameter when using dimethylformamide (DMF) as a solvent. Organic-based graphene inks can be used as antibacterial and anti-corrosion coatings with high adhesion and low imperfection. The studies show the high bactericidal efficiency of graphene ink, which amounts to 98.1–99.9% using the example of Pseudomonas aeruginosa and Staphylococcus epidermidis. At the same time, for the developed ink, the reduction in contamination is 2–3 orders of magnitude, which characterizes the developed composite as an effective antibacterial agent.

摘要 开发了一种生产有机基石墨烯墨水的新方法,即在 1-甲基-2-吡咯烷酮(NMP)中对石墨进行微机械剥离,然后通过改变溶剂分离石墨烯颗粒并用乙基纤维素稳定。研究表明,在 NMP 中通过微机械剥离法获得的石墨烯颗粒的产量比使用二甲基甲酰胺(DMF)作为溶剂时的相同参数高出 2 倍以上。有机基石墨烯油墨可用作抗菌防腐涂料,具有高附着力和低缺陷性。研究表明,石墨烯墨水的杀菌效率很高,以铜绿假单胞菌和表皮葡萄球菌为例,杀菌效率高达 98.1-99.9%。同时,对于所开发的墨水,污染的减少量为 2-3 个数量级,这说明所开发的复合材料是一种有效的抗菌剂。
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引用次数: 0
Effect of Metal-Oxide Nanoparticles on the Viscosity of Lamellar Liquid Crystals in the Lecithin–Oil Mixture–Water System 氧化金属纳米颗粒对卵磷脂-油混合物-水体系中片状液晶粘度的影响
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600299
N. M. Murashova, T. S. Tokareva, E. A. Ovchinnikova, S. V. Shulaev

Abstract

It is shown that the viscosity of lamellar liquid crystals in the system lecithin–avocado oil–tea tree oil–water in the shear rate range of 0.01–1.0 s–1 increases with increasing CuO concentration from 0.01 to 0.3 wt % when introduced as spherical nanoparticles with a diameter of 92 ± 3 nm and submicron cylindrical particles with a diameter of 151 ± 9 nm and a length of 268 ± 36 nm, while the shape of the flow curves does not change. The range of changes in the viscosity (compared to the sample without particles) at temperatures of 25 and 37°С is from 1.1 to 2.1 times for spherical nanoparticles and from 1.6 to 2.9 times for submicron cylindrical nanoparticles. When introducing spherical Al2O3 nanoparticles with an average diameter of 84 ± 32 nm and needle-shaped ZnO nanoparticles (diameter 37 ± 6 nm and length 302 ± 77 nm), similar results are obtained: the viscosity increased by 1.1–2.0 times compared to the sample without nanoparticles. In contrast to nanoparticles, the introduction of CuO microparticles (diameter 31.2 ± 3.6 μm) has virtually no effect on the viscosity of the composition.

摘要 研究表明,在剪切速率为 0.01-1.0 s-1 的卵磷脂-鳄梨油-茶树油-水体系中,当引入直径为 92 ± 3 nm 的球形纳米颗粒和直径为 151 ± 9 nm、长度为 268 ± 36 nm 的亚微米圆柱形颗粒时,片状液晶的粘度会随着 CuO 浓度从 0.01 wt % 到 0.3 wt % 的增加而增加,而流动曲线的形状不会改变。在温度为 25 和 37°С 时,球形纳米颗粒的粘度变化范围(与不含颗粒的样品相比)为 1.1 至 2.1 倍,亚微米圆柱形纳米颗粒的粘度变化范围(与不含颗粒的样品相比)为 1.6 至 2.9 倍。当引入平均直径为 84 ± 32 nm 的球形 Al2O3 纳米粒子和针状 ZnO 纳米粒子(直径为 37 ± 6 nm,长度为 302 ± 77 nm)时,也得到了类似的结果:与不含纳米粒子的样品相比,粘度增加了 1.1-2.0 倍。与纳米颗粒相反,引入氧化铜微粒(直径 31.2 ± 3.6 μm)对组合物的粘度几乎没有影响。
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引用次数: 0
3D Modeling of Cells of the Human Respiratory System for Studying the Prooxidant, Proapoptotic, and Profibrinogenic Effects of Carbon Nanotubes 用于研究碳纳米管促氧化、促凋亡和促纤维蛋白生成效应的人体呼吸系统细胞三维模型
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600342
L. M. Fatkhutdinova, G. F. Gabidinova, G. A. Timerbulatova, E. V. Valeeva, I. V. Kosyeva, E. V. Ubeykina, A. A. Sayagfarova

Abstract

The concept of “3Rs” (refinement, reduction, and replacement) has become widespread in toxicological studies. 3D cell models are a further development of traditional 2D models. In the current study, 3D models of the human respiratory system consisting of BEAS-2B bronchial epithelial cells and MRC5-SV40 lung fibroblasts are developed. The results of studying the toxicity of carbon nanotubes (CNTs) using advanced 3D models demonstrate the absence of proapoptotic and profibrogenic effects at concentrations corresponding to the reference exposure level. However, starting at a CNT concentration of 20 μg/mL, well above concentrations corresponding to the reference exposure level, signs of oxidative stress are detected in the cell models. 3D cell models can be recommended as a more objective screening method for assessing the toxicity of CNTs when moving from traditional in vitro experiments to in vivo studies.

摘要 "3R"(改进、减少和替换)的概念已在毒理学研究中得到广泛应用。三维细胞模型是传统二维模型的进一步发展。本研究建立了由 BEAS-2B 支气管上皮细胞和 MRC5-SV40 肺成纤维细胞组成的人体呼吸系统三维模型。利用先进的三维模型研究碳纳米管(CNTs)毒性的结果表明,在与参考暴露水平相对应的浓度下,碳纳米管(CNTs)不存在促凋亡和促嗜铬细胞生成效应。然而,从碳纳米管浓度为 20 μg/mL(远高于参考暴露水平)开始,细胞模型中检测到氧化应激迹象。当从传统的体外实验转向体内研究时,三维细胞模型可作为评估 CNT 毒性的一种更客观的筛选方法。
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引用次数: 0
Triple Nanosystems Based on Amphiphilic Molecular Brushes, Selenium Nanoparticles and Photosensitizer: Synthesis, Spectral, and Morphological Characteristics 基于两性分子刷、硒纳米粒子和光敏剂的三重纳米系统:合成、光谱和形态特征
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167623601250
S. V. Valueva, E. L. Krasnopeeva, L. N. Borovikova, P. Yu. Morozova, M. P. Sokolova, E. Yu. Melenevskaya, A. V. Yakimansky

Abstract

In order to create new high efficient anticancer drugs for photodynamic therapy (PDT) the triple complexes on the basis of the zero-valent selenium (Se0) nanoparticles, graft copolymer (Cell-graft-PMAA) and photosensitizer-fotoditazin (FD) with various priority of introduction of the components have been synthesized and studied. The comparative studies of the spectral and morphological characteristics of the triple complexes (Cell-graft-PMAA/SeNPs) (the 1st method) and (Cell-graft-PMAA/FD/SeNPs) (the 2nd method) with the similar characteristics of FD and double complexes of the variable composition (SeNPs/Cell-graft-PMAA, SeNPs/FD and Cell-graft-PMAA/FD) were carried out by means of UV/IR spectroscopy, luminescence and atomic force microscopy. By means of the UV spectroscopy it was demonstrated that the value of the optical density in the range of PDT wavelength (Q-range) is higher in the triple systems by 30–40% compared to free FD and luminescence intensity in the Q-range for these nanosystems is in excess of 6 times compared to the intensity for FD.

摘要 为了制备新型高效光动力疗法(PDT)抗癌药物,我们合成并研究了以零价硒(Se0)纳米粒子、接枝共聚物(Cell-graft-PMAA)和光敏剂-磷哒嗪(FD)为基础的三重复合物,其中各组分的引入具有不同的优先级。通过紫外/红外光谱、发光和原子力显微镜,比较研究了三重复合物(Cell-graft-PMAA/SeNPs)(第一种方法)和(Cell-graft-PMAA/FD/SeNPs)(第二种方法)的光谱和形态特征,以及与 FD 相似的特征和不同组成的双重复合物(SeNPs/Cell-graft-PMAA、SeNPs/FD 和 Cell-graft-PMAA/FD)。紫外光谱显示,与游离 FD 相比,三重系统在 PDT 波长范围(Q-range)内的光密度值要高出 30-40%;与 FD 相比,这些纳米系统在 Q 范围内的发光强度超过 6 倍。
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引用次数: 0
Influence of the Morphological Characteristics and Filling of Polylactide Matrices on the Proliferation of HEK293T Cells 聚乳酸基质的形态特征和填充物对 HEK293T 细胞增殖的影响
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600421
A. M. Azieva, D. A. Kirillova, E. V. Yastremsky, R. V. Sharikov, N. A. Sharikova, K. G. Antipova, T. E. Grigoriev, A. L. Vasiliev

Abstract

The adhesion, proliferation, differentiation, and other types of interaction of a cell culture with synthetic biocompatible matrices completely depend on the type of cells, as well as on the structure, filling, and surface of the matrix itself. The results of studying the proliferation of HEK293T cells on polylactide matrices of various architectures are presented. An estimate of the rate of cell proliferation is obtained for oriented and nonoriented spongy and nonwoven fibrous matrices, as well as composite polylactide matrices with collagen and chitosan.

摘要 细胞培养物与合成生物相容性基质的粘附、增殖、分化和其他类型的相互作用完全取决于细胞的类型以及基质本身的结构、填充物和表面。本文介绍了研究 HEK293T 细胞在不同结构的聚乳酸基质上增殖的结果。对定向和非定向海绵状纤维基质、无纺布纤维基质以及含有胶原蛋白和壳聚糖的复合聚乳酸基质的细胞增殖率进行了估算。
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引用次数: 0
Resistive Switching in Nitride Memristors: Experiment 氮化物 Memristors 中的电阻开关:实验
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167624600305
I. S. Ezubchenko, I. A. Chernykh, A. A. Andreev, O. A. Kondratev, N. K. Chumakov, V. G. Valeyev

Abstract

The features of resistive switching in memristors based on crystalline aluminum nitride with a wurtzite structure, grown under technology developed at the National Research Center “Kurchatov Institute” are studied.

摘要 研究了根据 "库尔恰托夫研究所 "国家研究中心开发的技术制造的、基于晶状氮化铝的晶状忆阻器的电阻开关特性。
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引用次数: 0
Surface-Enhanced Raman Scattering: 50 Years of Development and Its Role in Nanobiotechnology 表面增强拉曼散射:50 年的发展及其在纳米生物技术中的作用
IF 0.8 Q3 Engineering Pub Date : 2024-08-06 DOI: 10.1134/s2635167623601468
E. V. Solovyeva

Abstract

The review covers the main stages in the development and achievements of surface-enhanced Raman scattering (SERS), the fiftieth anniversary of which we celebrate in 2024. Modern theoretical views on the SERS effect, a retrospective of the substrates and materials used, and expansion of the range of studied compounds and objects are presented. Using the example of the most important and interesting applications of SERS spectroscopy, the achievements of the last decade are considered; its role in modern surface chemistry, nanotechnology, bioanalysis and bioimaging methods is shown.

摘要 这篇综述涵盖了表面增强拉曼散射(SERS)的主要发展阶段和成就。文中介绍了有关 SERS 效应的现代理论观点、所使用基底和材料的回顾,以及所研究化合物和对象范围的扩展。以 SERS 光谱最重要和最有趣的应用为例,介绍了过去十年的成就;展示了其在现代表面化学、纳米技术、生物分析和生物成像方法中的作用。
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引用次数: 0
期刊
Nanotechnologies in Russia
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