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Influence of Simulation Box Sizes on the Stability of Lysozyme Dimers and Hexamers in a Crystallization Solution 模拟盒尺寸对溶菌酶二聚体和六聚体在结晶溶液中稳定性的影响
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600767
Yu. V. Kordonskaya, I. F. Garipov, V. I. Timofeev, M. A. Marchenkova, Yu. A. Dyakova, Yu. V. Pisarevsky, M. V. Kovalchuk

Abstract

The effect of the simulation box size on the stability of lysozyme dimers and hexamers formed in its solution before crystallization is studied by molecular dynamics. The behavior of these oligomers in boxes of different sizes is simulated, and their stability is assessed. It is shown that increasing the simulation box does not lead to refinement of the simulation results. The dimer stability weakly depends on the box sizes, while hexamers dissociated in all boxes considered, which is consistent with small-angle scattering data. The minimum distance between the protein and the box edge, at which the results of modeling oligomer behavior in crystallization solutions are reliable, is determined (1 nm).

摘要 通过分子动力学研究了模拟盒大小对溶菌酶结晶前在其溶液中形成的二聚体和六聚体稳定性的影响。模拟了这些低聚物在不同大小模拟盒中的行为,并评估了它们的稳定性。结果表明,增大模拟盒并不会导致模拟结果的细化。二聚体的稳定性微弱地依赖于盒子的大小,而六聚体在所有考虑的盒子中都会解离,这与小角散射数据一致。确定了蛋白质与方框边缘之间的最小距离(1 nm),在该距离上,结晶溶液中的低聚物行为建模结果是可靠的。
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引用次数: 0
First-Principles Calculation and X-ray Photoelectron Spectroscopy of Rutile-Like Transition Metal Oxides TiO2 and MoO2 类金红石过渡金属氧化物 TiO2 和 MoO2 的第一原理计算和 X 射线光电子能谱分析
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167623601298
M. D. Manyakin, S. I. Kurganskii, N. I. Boikov, I. S. Kakuliia, S. V. Kannykin, O. A. Chuvenkova, R. G. Chumakov, A. M. Lebedev, S. Yu. Turishchev

The results of studying the electronic structure of transition-metal oxides TiO2 and MoO2 with a rutile-type crystal structure are presented. The electronic structure is studied theoretically within the framework of the linearized augmented-plane-wave method using the Wien2k software package. The band structure, and the total and partial densities of electronic states are calculated. Based on the filling of energy bands with electrons, an explanation is given for the different types of electrical conductivity of TiO2 and MoO2. The valence band and subvalent states of commercial TiO2 and MoO2 samples in the form of powders at two different excitation energies of 120 and 1486.6 eV are studied using X-ray photoelectron spectroscopy. Based on calculations, the observed features of the structure of the experimentally recorded spectra are interpreted.

本文介绍了对具有金红石型晶体结构的过渡金属氧化物 TiO2 和 MoO2 的电子结构的研究结果。在线性化增强平面波方法的框架内,使用 Wien2k 软件包对电子结构进行了理论研究。计算了能带结构以及电子态的总密度和部分密度。根据电子对能带的填充,解释了二氧化钛和二氧化钼不同类型的导电性。利用 X 射线光电子能谱对粉末形式的商用二氧化钛和二氧化钼样品在 120 和 1486.6 eV 两种不同激发能量下的价带和亚价态进行了研究。在计算的基础上,对实验记录光谱的结构特征进行了解释。
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引用次数: 0
Magnetic Nanodiscs That Destroy Glioblastoma Cells in a Targeted Way in an Alternating Nonheating Magnetic Field 在交变非加热磁场中以靶向方式摧毁胶质母细胞瘤细胞的磁性纳米盘
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600834
V. D. Fedotovskaya, S. S. Zamai, M. V. Zotova, A. N. Masyugin, F. V. Zelenov, N. A. Luzan, T. N. Zamai, A. A. Koshmanova, D. A. Kirichenko, E. D. Nikolaeva, O. S. Kolovskaya, I. A. Shchugoreva, G. S. Zamai, V. N. Zabluda, A. A. Borus, A. S. Bukatin, I. N. Lapin, V. A. Svetlichnyi, E. V. Morozov, K. A. Luk’yanenko, F. G. Zograf, F. N. Tomilin, A. E. Sokolov, A. A. Narodov, R. G. Galeev, A. S. Kichkailo

Abstract

The need to develop a surgical instrument that can most effectively and minimally invasively remove a malignant tumor, and distinguish and destroy only tumor cells without damaging the normal cells of healthy tissue surrounding the tumor is being considered. To achieve this goal, it is proposed to use nanodiscs with special magnetic, electronic and optical properties. Nanodiscs modified with recognition ligands (aptamers) are able to bind to tumor cells and destroy them under the influence of a weak, nonheating alternating magnetic field. This allows for effective tumor destruction while minimizing the impact on surrounding healthy tissue.

摘要 目前正在考虑开发一种手术器械,它能最有效地微创切除恶性肿瘤,并且只区分和破坏肿瘤细胞,而不损伤肿瘤周围健康组织的正常细胞。为实现这一目标,建议使用具有特殊磁性、电子和光学特性的纳米盘。经过识别配体(aptamers)修饰的纳米光盘能够与肿瘤细胞结合,并在微弱、非加热交变磁场的影响下摧毁肿瘤细胞。这样既能有效摧毁肿瘤,又能最大限度地减少对周围健康组织的影响。
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引用次数: 0
Technology for Manufacturing TSV Structures for the Creation of Silicon Interposers Using Temporary-Bonding Technology 利用临时粘合技术制造用于创建硅中间膜的 TSV 结构的技术
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600408
N. A. Djuzhev, E. E. Gusev, M. Yu. Fomichev, P. S. Ivanin

Abstract

For the first time in Russia, we present a technology for temporary wafer bonding, which is used to form through holes in silicon (through-silica via (TSV) structures) with a high aspect ratio of depth to diameter (more than 10 to 1), as well as a method for transferring alignment marks from the front to the back side of a thin Si wafer, consisting in the use of a glass carrier plate, which allows for a sufficient amount of deflection of the assembly for lithography. The modernized operating parameters of Si-glass bonding, which consist in controlling the cooling rate of the plates and applying pressure to the plates during their cooling phase, ensure a reduction in the deflection of the resulting assembly by 75% before thinning and by 65% after thinning to a residual thickness of 125 μm while maintaining the mechanical integrity of the plates.

摘要在俄罗斯,我们首次提出了一种用于在硅片上形成通孔(硅通孔 (TSV) 结构)的临时硅片键合技术,其深度与直径的纵横比很高(超过 10:1),同时还提出了一种将对准标记从薄硅片正面转移到背面的方法,该方法包括使用玻璃载板,使光刻时的组件有足够的偏转量。Si-glass 粘合的现代化操作参数包括控制载板的冷却速度以及在冷却阶段对载板施加压力,从而确保在减薄前将所得组件的偏转量减少 75%,在减薄至 125 μm 的残余厚度后将偏转量减少 65%,同时保持载板的机械完整性。
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引用次数: 0
Application of ZIF-8/ZIF-67 Multilayer Films for NO2 and CO Detection ZIF-8/ZIF-67 多层薄膜在二氧化氮和一氧化碳检测中的应用
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600949
O. I. Il’in, V. A. Polyakov, N. N. Rudyk, Yu. Yu. Zhityaeva, A. V. Saenko, M. A. Gritsai, A. A. Chefranov, M. A. Soldatov

Prototypes of gas sensors with sensitive elements are made based on ZIF-8 and ZIF-67 films obtained directly on a substrate by immersion. The sensitivity of the prototypes to NO2 and CO is assessed by simultaneously analyzing the capacitive and resistive response. It is shown that the functionalization of ZIF-8 films with layers of ZIF-67/ZIF-8 leads to an increase in the sensitivity of the sensor to NO2 by more than 2 times compared to ZIF-8 films, and also allows CO detection. A sensor prototype based on ZIF-67/ZIF-8 films shows a resistive and capacitive sensitivity to NO2 of 3 and 6% (for 45 ppm), 14 and 15% (for 85 ppm), and to CO of 9 and 7% (for 6 ppm), 15 and 10% (for 10 ppm). It is shown that parallel analysis of the capacitive and resistive response makes it possible to increase the accuracy of the analysis of the sensor response when exposed to various gases and can be used as the basis for a software interface for training sensor operation using artificial intelligence.

在通过浸泡法直接在基底上获得的 ZIF-8 和 ZIF-67 薄膜的基础上,制作了带有敏感元件的气体传感器原型。通过同时分析电容和电阻响应,评估了原型对二氧化氮和一氧化碳的灵敏度。结果表明,用 ZIF-67/ZIF-8 膜层对 ZIF-8 薄膜进行功能化处理后,传感器对 NO2 的灵敏度比 ZIF-8 薄膜提高了 2 倍以上,而且还能检测 CO。基于 ZIF-67/ZIF-8 薄膜的传感器原型对二氧化氮的电阻灵敏度和电容灵敏度分别为 3%和 6%(ppm 为 45)、14%和 15%(ppm 为 85),对一氧化碳的电阻灵敏度和电容灵敏度分别为 9%和 7%(ppm 为 6)、15%和 10%(ppm 为 10)。分析表明,对电容和电阻响应进行并行分析,可以提高对传感器暴露于各种气体时的响应进行分析的准确性,并可作为使用人工智能训练传感器操作的软件界面的基础。
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引用次数: 0
Comprehensive Study of the Stability of PtCu/C Catalysts for Low-Temperature Fuel Cells 用于低温燃料电池的 PtCu/C 催化剂稳定性综合研究
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600913
S. V. Belenov, E. E. Moguchikh, A. S. Pavlets, I. V. Pankov, V. S. Menshchikov

The catalytic activity in the oxygen-reduction reaction and stability in various stress-testing modes are studied for bimetallic PtCu/C catalysts with platinum contents of 20 and 30 wt %, obtained by liquid-phase synthesis methods, is studied by cyclic-voltammetry methods on a rotating disk electrode in a three-electrode cell and as part of a membrane-electrode assembly in comparison with a commercial Pt/C catalyst. Significant differences in the degree of degradation of the studied PtCu/C and Pt/C catalysts for low-temperature fuel cells are shown, namely from 33 to 67% depending on the stress-testing method and catalyst composition.

通过液相合成方法获得的铂含量为 20 和 30 wt % 的双金属 PtCu/C 催化剂,与商用 Pt/C 催化剂相比,在三电极电池的旋转盘电极上以及作为膜电极组件的一部分,采用循环伏安法研究了氧还原反应中的催化活性和各种应力测试模式下的稳定性。结果表明,所研究的用于低温燃料电池的 PtCu/C 和 Pt/C 催化剂在降解程度上存在显著差异,根据应力测试方法和催化剂成分的不同,降解程度从 33% 到 67%不等。
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引用次数: 0
Technology of Application of the Multilayer Nanofilm ZIF-8/ZIF-67 for CO Detection 用于二氧化碳检测的多层纳米薄膜 ZIF-8/ZIF-67 的应用技术
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s263516762360133x
M. A. Gritsai, V. A. Polyakov, O. I. Il’in, N. N. Rudyk, Yu. Yu. Zhityaeva, P. V. Medvedev, A. V. Saenko, M. A. Soldatov

The process of the formation of gas-sensitive nanofilms ZIF-8 and ZIF-67 on substrates, which are glass chips with contact tracks formed on them, is studied. Multilayer ZIF-8/ZIF-67 nanofilms are grown on a substrate by cyclic layer-by-layer coating in solution. The film growth process is monitored after each cycle using X-ray diffraction, elemental analysis, and scanning electron microscopy. It is shown that at least three 30-minute growth cycles are required to form a strong, uniform ZIF-8 film. Additionally, the sensory properties of the obtained samples for the detection of carbon monoxide CO are studied.

研究了气敏纳米薄膜 ZIF-8 和 ZIF-67 在基底上的形成过程,基底是在其上形成接触轨迹的玻璃芯片。多层 ZIF-8/ZIF-67 纳米薄膜是通过在溶液中循环逐层涂覆的方式在基底上生长的。在每个循环之后,使用 X 射线衍射、元素分析和扫描电子显微镜监测薄膜的生长过程。结果表明,至少需要三个 30 分钟的生长周期才能形成坚固、均匀的 ZIF-8 薄膜。此外,还研究了所获得样品在检测一氧化碳 CO 方面的感官特性。
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引用次数: 0
On the Biomimetic Synthesis of Nanoparticles of Zinc Compounds 锌化合物纳米颗粒的仿生合成
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167623601286
E. A. Mukhanova, K. Y. Cardenas Rodriguez, V. O. Shevchenko, P. D. Kuznetsova, A. N. Bulgakov, O. E. Polozhentsev

The biomimetic synthesis of nanoparticles has many advantages over classical methods due to the possibility of combining special reaction conditions and a ready-made matrix to form a given particle morphology. The possibility of synthesizing zinc-sulfide nanoparticles in sprouts of Vigna radiata (L.) R. Wilczek and Lentilla lens (L.) W. Wight is investigated. It is established that the optimal biological matrix for synthesis is Vigna radiata (L.) R. Wilczek. The method used opens up a new way to producing other inorganic materials.

与传统方法相比,纳米粒子的生物仿生合成具有许多优势,因为它可以将特殊的反应条件和现成的基质结合起来,形成特定的粒子形态。本文研究了在 Vigna radiata (L.) R. Wilczek 和 Lentilla lens (L.) W. Wight 的嫩芽中合成纳米硫化锌颗粒的可能性。结果表明,合成的最佳生物基质是 Vigna radiata (L.) R. Wilczek。所使用的方法为生产其他无机材料开辟了一条新途径。
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引用次数: 0
Mechanical Properties of Individual Porous Chitosan Particles: Full Scale and Numerical Experiments 单个多孔壳聚糖颗粒的力学性能:全尺寸和数值实验
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167624600901
O. V. Nikulenkova, A. E. Krupnin, P. V. Dmitryakov, Yu. D. Zagoskin, S. N. Malakhov, T. E. Grigoriev, N. M. Kuznetsov, S. N. Chvalun

Abstract

The mechanical behavior of porous chitosan particles with various diameters obtained by freeze drying is investigated. The morphology of the particles is visualized by scanning electron microscopy. It is shown that the particles have a predominantly spherical shape and a honeycomb-like structure with interpenetrating pores. The mechanical characteristics of the particle material are modeled using the neo-Hookean, second-order Yeoh, Blatz-Ko, and third-order Ogden foam hyperelastic models, based on the results of mechanical compression tests between parallel plates and numerical solution of the reverse-engineering problem using the finite-element method. Force-displacement curves are plotted for the proposed models and then verified in a similar full-scale experiment with particles of another diameter.

摘要 研究了通过冷冻干燥获得的不同直径的多孔壳聚糖颗粒的机械行为。通过扫描电子显微镜观察了颗粒的形态。结果表明,颗粒主要呈球形,并具有蜂窝状结构和相互渗透的孔隙。根据平行板间的机械压缩试验结果和有限元法对逆向工程问题的数值求解,使用新胡克安模型、二阶 Yeoh 模型、Blatz-Ko 模型和三阶奥格登泡沫超弹性模型对颗粒材料的机械特性进行了建模。绘制了所提模型的力-位移曲线,然后用另一种直径的颗粒在类似的全尺寸实验中进行了验证。
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引用次数: 0
Theoretical Modeling of Indium Adatoms on Reconstructed GaAs(001) and AlAs(001) Surfaces 重构砷化镓(001)和砷化镓(001)表面铟原子的理论建模
IF 0.8 Q3 Engineering Pub Date : 2024-09-10 DOI: 10.1134/s2635167623601328
V. A. Roldugin, M. A. Soldatov

Abstract

GaAs/AlAs(001) (2 × 4) is one of the most optimal substrates for optoelectronic and nanophotonic applications. Droplet epitaxy allows high-quality quantum dot (QD) arrays with the desired properties to be obtained, but the detailed mechanism of deposition and subsequent epitaxial growth is still questionable. In this paper, the growth mechanism of indium QDs on various GaAs/AlAs(001) surfaces is studied within calculations of density functional theory. Full geometry optimization, in which the coordinates of substrate atoms can be altered under adatom impact, is shown to be a straightforward technique for the simulation of adsorption processes. The obtained results are in good agreement with conventional methods and well-known findings. The proposed approach could become standard practice and extend the understanding of droplet epitaxy.

摘要GaAs/AlAs(001) (2 × 4) 是光电和纳米光子应用的最佳基底之一。液滴外延可以获得具有所需特性的高质量量子点(QD)阵列,但沉积和后续外延生长的详细机理仍存在疑问。本文通过密度泛函理论计算,研究了各种 GaAs/AlAs(001)表面上铟 QD 的生长机制。全几何优化是模拟吸附过程的一种直接技术,其中基底原子的坐标可以在吸附原子的影响下发生改变。所获得的结果与传统方法和众所周知的研究结果十分吻合。建议的方法可以成为标准实践,并扩展对液滴外延的理解。
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引用次数: 0
期刊
Nanotechnologies in Russia
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