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A Connected World: System-Level Support Through Biosensors. 互联世界:通过生物传感器的系统级支持。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-100322-040914
Eric S McLamore, Shoumen P A Datta

The goal of protecting the health of future generations is a blueprint for future biosensor design. Systems-level decision support requires that biosensors provide meaningful service to society. In this review, we summarize recent developments in cyber physical systems and biosensors connected with decision support. We identify key processes and practices that may guide the establishment of connections between user needs and biosensor engineering using an informatics approach. We call for data science and decision science to be formally connected with sensor science for understanding system complexity and realizing the ambition of biosensors-as-a-service. This review calls for a focus on quality of service early in the design process as a means to improve the meaningful value of a given biosensor. We close by noting that technology development, including biosensors and decision support systems, is a cautionary tale. The economics of scale govern the success, or failure, of any biosensor system.

保护后代健康的目标是未来生物传感器设计的蓝图。系统级决策支持要求生物传感器为社会提供有意义的服务。在这篇综述中,我们总结了与决策支持相关的网络物理系统和生物传感器的最新发展。我们确定了关键的过程和实践,这些过程和实践可以指导用户需求和生物传感器工程之间使用信息学方法建立联系。我们呼吁将数据科学和决策科学与传感器科学正式联系起来,以理解系统的复杂性,实现生物传感器即服务的目标。这篇综述呼吁在设计过程的早期关注服务质量,以此作为提高给定生物传感器的有意义价值的手段。我们最后指出,包括生物传感器和决策支持系统在内的技术发展是一个值得警惕的故事。规模经济决定着任何生物传感器系统的成败。
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引用次数: 0
Label-Free Electrochemical Methods for Disease Detection. 无标签电化学方法用于疾病检测。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091622-085754
Kira L Rahn, Umesha Peramune, Tianyi Zhang, Robbyn K Anand
Label-free electrochemical biosensing leverages the advantages of label-free techniques, low cost, and fewer user steps, with the sensitivity and portability of electrochemical analysis. In this review, we identify four label-free electrochemical biosensing mechanisms: (a) blocking the electrode surface, (b) allowing greater access to the electrode surface, (c) changing the intercalation or electrostatic affinity of a redox probe to a biorecognition unit, and (d) modulating ion or electron transport properties due to conformational and surface charge changes. Each mechanism is described, recent advancements are summarized, and relative advantages and disadvantages of the techniques are discussed. Furthermore, two avenues for gaining further diagnostic information from label-free electrochemical biosensors, through multiplex analysis and incorporating machine learning, are examined. Expected final online publication date for the Annual Review of Analytical Chemistry, Volume 16 is June 2023. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
无标签电化学生物传感利用无标签技术、低成本和更少的用户步骤的优点,具有电化学分析的灵敏度和便携性。在这篇综述中,我们确定了四种无标记的电化学生物传感机制:(a)阻断电极表面,(b)允许更多地进入电极表面,(c)改变氧化还原探针对生物识别单元的插层或静电亲和力,以及(d)由于构象和表面电荷变化而调节离子或电子传输性质。介绍了每一种机理,总结了最近的进展,并讨论了这些技术的相对优缺点。此外,通过多重分析和结合机器学习,研究了从无标签电化学生物传感器获得进一步诊断信息的两种途径。
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引用次数: 1
Enhancing the Depth of Analyses with Next-Generation Ion Mobility Experiments. 通过下一代离子迁移率实验提高分析深度。
Pub Date : 2023-06-14 Epub Date: 2023-03-31 DOI: 10.1146/annurev-anchem-091522-031329
Benjamin P Zercher, Theresa A Gozzo, AnneClaire Wageman, Matthew F Bush

Recent developments in ion mobility (IM) technology have expanded the capability to separate and characterize gas-phase ions of biomolecules, especially when paired with mass spectrometry. This next generation of IM technology has been ushered in by creative innovation focused on both instrument architectures and how electric fields are applied. In this review, we focus on the application of high-resolution and multidimensional IM to biomolecular analyses, encompassing the fields of glycomics, lipidomics, peptidomics, and proteomics. We highlight selected research that demonstrates the application of the new IM toolkit to challenging biomolecular systems. Through our review of recently published literature, we outline the current strengths of respective technologies and perspectives for future applications.

离子迁移率(IM)技术的最新发展扩展了分离和表征生物分子气相离子的能力,尤其是当与质谱法配对时。下一代IM技术是由专注于仪器架构和电场应用方式的创造性创新开创的。在这篇综述中,我们重点介绍了高分辨率和多维IM在生物分子分析中的应用,包括糖组学、脂质组学、肽组学和蛋白质组学领域。我们重点介绍了选定的研究,这些研究证明了新IM工具包在具有挑战性的生物分子系统中的应用。通过对最近发表的文献的回顾,我们概述了各自技术的当前优势和未来应用的前景。
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引用次数: 0
Beginner's Guide to Micro- and Nanoscale Electrochemical Additive Manufacturing. 微纳米级电化学增材制造初学者指南。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091522-122334
Julian Hengsteler, Karuna Aurel Kanes, Liaisan Khasanova, Dmitry Momotenko

Electrochemical additive manufacturing is an advanced microfabrication technology capable of producing features of almost unlimited geometrical complexity. A unique combination of the capacity to process conductive materials, design freedom, and micro- to nanoscale resolution offered by these electrochemical techniques promises tremendous opportunities for a multitude of future applications spanning microelectronics, sensing, robotics, and energy storage. This review aims to equip readers with the basic principles of electrochemical 3D printing at the small length scale. By describing the basic principles of electrochemical additive manufacturing technology and using the recent advances in the field, this beginner's guide illustrates how controlling the fundamental phenomena that underpin the print process can be used to vary dimensions, morphology, and microstructure of printed structures.

电化学增材制造是一种先进的微细加工技术,能够产生几乎无限几何复杂性的特征。这些电化学技术所提供的处理导电材料的能力、设计自由度和微到纳米级分辨率的独特组合,为微电子、传感、机器人和能量存储等众多未来应用提供了巨大的机会。本综述旨在为读者提供小尺寸电化学3D打印的基本原理。通过描述电化学增材制造技术的基本原理和使用该领域的最新进展,本初学者指南说明了如何控制支撑打印过程的基本现象,可以用来改变打印结构的尺寸,形态和微观结构。
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引用次数: 1
Microfluidics for Biofilm Studies. 生物膜研究中的微流体。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091522-103827
Lu Yuan, Hervé Straub, Liubov Shishaeva, Qun Ren

Biofilms are multicellular communities held together by a self-produced extracellular matrix and exhibit a set of properties that distinguish them from free-living bacteria. Biofilms are exposed to a variety of mechanical and chemical cues resulting from fluid motion and mass transport. Microfluidics provides the precise control of hydrodynamic and physicochemical microenvironments to study biofilms in general. In this review, we summarize the recent progress made in microfluidics-based biofilm research, including understanding the mechanism of bacterial adhesion and biofilm development, assessment of antifouling and antimicrobial properties, development of advanced in vitro infection models, and advancement in methods to characterize biofilms. Finally, we provide a perspective on the future direction of microfluidics-assisted biofilm research.

生物膜是由自我产生的细胞外基质结合在一起的多细胞群落,并表现出一系列与自由生活的细菌不同的特性。生物膜暴露于流体运动和质量运输引起的各种机械和化学信号。微流体技术为研究生物膜提供了精确的流体动力学和物理化学微环境控制。本文综述了近年来基于微流控技术的生物膜研究进展,包括对细菌粘附和生物膜形成机制的理解、抗污和抗菌性能的评估、先进的体外感染模型的建立以及生物膜表征方法的进展。最后,对微流体辅助生物膜研究的未来发展方向进行了展望。
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引用次数: 1
Sensors for Coastal and Ocean Monitoring. 海岸和海洋监测传感器。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091922-085746
Ciprian Briciu-Burghina, Sean Power, Adrian Delgado, Fiona Regan

In situ water monitoring sensors are critical to gain an understanding of ocean biochemistry and ecosystem health. They enable the collection of high-frequency data and capture ecosystem spatial and temporal changes, which in turn facilitate long-term global predictions. They are used as decision support tools in emergency situations and for risk mitigation, pollution source tracking, and regulatory monitoring. Advanced sensing platforms exist to support various monitoring needs together with state-of-the-art power and communication capabilities. To be fit-for-purpose, sensors must withstand the challenging marine environment and provide data at an acceptable cost. Significant technological advancements have catalyzed the development of new and improved sensors for coastal and oceanographic applications. Sensors are becoming smaller, smarter, more cost-effective, and increasingly specialized and diversified. This article, therefore, provides a review of the state-of-the art oceanographic and coastal sensors. Progress in sensor development is discussed in terms of performance and the key strategies used for achieving robustness, marine rating, cost reduction, and antifouling protection.

原位水监测传感器对于了解海洋生物化学和生态系统健康至关重要。它们能够收集高频数据并捕捉生态系统的时空变化,从而促进长期全球预测。它们被用作紧急情况下的决策支持工具,并用于风险缓解、污染源跟踪和监管监测。现有的先进传感平台可支持各种监测需求,以及最先进的电源和通信能力。为了适应用途,传感器必须能够承受具有挑战性的海洋环境,并以可接受的成本提供数据。重大的技术进步促进了用于沿海和海洋学应用的新型和改进的传感器的发展。传感器正变得更小、更智能、更具成本效益,并且越来越专业化和多样化。因此,本文提供了最新的海洋和海岸传感器的综述。从性能和实现鲁棒性、船用等级、降低成本和防污保护的关键策略方面讨论了传感器发展的进展。
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引用次数: 2
Enhanced Multiplexing Technology for Proteomics. 蛋白质组学的增强复用技术。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091622-092353
Bailey L Bowser, Renã A S Robinson

The identification of thousands of proteins and their relative levels of expression has furthered understanding of biological processes and disease and stimulated new systems biology hypotheses. Quantitative proteomics workflows that rely on analytical assays such as mass spectrometry have facilitated high-throughput measurements of proteins partially due to multiplexing. Multiplexing allows proteome differences across multiple samples to be measured simultaneously, resulting in more accurate quantitation, increased statistical robustness, reduced analysis times, and lower experimental costs. The number of samples that can be multiplexed has evolved from as few as two to more than 50, with studies involving more than 10 samples being denoted as enhanced multiplexing or hyperplexing. In this review, we give an update on emerging multiplexing proteomics techniques and highlight advantages and limitations for enhanced multiplexing strategies.

数千种蛋白质及其相对表达水平的鉴定进一步加深了对生物过程和疾病的理解,并刺激了新的系统生物学假设。依赖于质谱等分析分析的定量蛋白质组学工作流程促进了蛋白质的高通量测量,部分原因是多路复用。多路复用允许同时测量多个样品之间的蛋白质组差异,从而实现更准确的定量,增加统计稳健性,减少分析时间,降低实验成本。可以复用的样本数量已经从少至2个发展到超过50个,涉及超过10个样本的研究被称为增强复用或超复用。在这篇综述中,我们给出了新兴的多路复用蛋白质组学技术的最新进展,并强调了增强多路复用策略的优点和局限性。
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引用次数: 3
Digital Histopathology by Infrared Spectroscopic Imaging. 通过红外光谱成像进行数字组织病理学研究。
Pub Date : 2023-06-14 Epub Date: 2023-04-17 DOI: 10.1146/annurev-anchem-101422-090956
Rohit Bhargava

Infrared (IR) spectroscopic imaging records spatially resolved molecular vibrational spectra, enabling a comprehensive measurement of the chemical makeup and heterogeneity of biological tissues. Combining this novel contrast mechanism in microscopy with the use of artificial intelligence can transform the practice of histopathology, which currently relies largely on human examination of morphologic patterns within stained tissue. First, this review summarizes IR imaging instrumentation especially suited to histopathology, analyses of its performance, and major trends. Second, an overview of data processing methods and application of machine learning is given, with an emphasis on the emerging use of deep learning. Third, a discussion on workflows in pathology is provided, with four categories proposed based on the complexity of methods and the analytical performance needed. Last, a set of guidelines, termed experimental and analytical specifications for spectroscopic imaging in histopathology, are proposed to help standardize the diversity of approaches in this emerging area.

红外(IR)光谱成像可记录空间分辨的分子振动光谱,从而全面测量生物组织的化学构成和异质性。将显微镜中的这种新型对比机制与人工智能的使用相结合,可以改变组织病理学的实践,目前组织病理学主要依赖于人类对染色组织内形态模式的检查。首先,本综述概述了特别适用于组织病理学的红外成像仪器、其性能分析和主要趋势。其次,概述了数据处理方法和机器学习的应用,重点是深度学习的新兴应用。第三,讨论了病理学工作流程,根据方法的复杂性和所需的分析性能提出了四个类别。最后,提出了一套指南,即组织病理学光谱成像的实验和分析规范,以帮助规范这一新兴领域的方法多样性。
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引用次数: 0
Photoluminescence Probes in Data-Enabled Sensing. 数据传感中的光致发光探针。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091522-033010
Claudia Von Suskil, Micaih J Murray, Dipak B Sanap, Sharon L Neal

This review summarizes the current status of development in photoluminescent probes, multidimensional photoluminescence detection, and multivariate data analysis methods. It then highlights reports featuring multivariate analysis of multidimensional measurements of photoluminescent probes published between June 2015 and June 2022, emphasizing work in the last 5 years. Important trends include the development of probe arrays, which provide fingerprint responses to the analyte(s) of interest and facilitate the analysis of complex samples; the application of neural networks and deep learning to pattern recognition and feature selection in photoluminescence images; and the application of multiway multivariate analysis to mining matrices, three-way arrays, and higher-order measurements, including hyperspectral intensity and lifetime images. These examples illustrate the increase in information extraction provided by the combination of multidimensional measurements and multivariate analysis.

本文综述了光致发光探针、多维光致发光检测和多变量数据分析方法的发展现状。然后重点介绍了2015年6月至2022年6月期间发表的光致发光探针多维测量的多变量分析报告,重点介绍了最近5年的工作。重要的趋势包括探针阵列的发展,它为感兴趣的分析物提供指纹响应,并促进复杂样品的分析;神经网络与深度学习在光致发光图像模式识别与特征选择中的应用以及多向多元分析在挖掘矩阵、三向阵列和高阶测量(包括高光谱强度和寿命图像)中的应用。这些示例说明了多维度量和多变量分析相结合所提供的信息提取的增加。
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引用次数: 0
Wearable Microfluidics for Continuous Assay. 用于连续检测的可穿戴微流体。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091322-082930
Pei-Heng Lin, Hsin-Hua Nien, Bor-Ran Li

The development of wearable devices provides approaches for the realization of self-health care. Easily carried wearable devices allow individual health monitoring at any place whenever necessary. There are various interesting monitoring targets, including body motion, organ pressure, and biomarkers. An efficient use of space in one small device is a promising resolution to increase the functions of wearable devices. Through integration of a microfluidic system into wearable devices, embedding complicated structures in one design becomes possible and can enable multifunction analyses within a limited device volume. This article reviews the reported microfluidic wearable devices, introduces applications to different biofluids, discusses characteristics of the design strategies and sensing principles, and highlights the attractive configurations of each device. This review seeks to provide a detailed summary of recent advanced microfluidic wearable devices. The overview of advanced key components is the basis for the development of future microfluidic wearable devices.

可穿戴设备的发展为实现自我保健提供了途径。方便携带的可穿戴设备可以在任何地方进行个人健康监测。有各种有趣的监测目标,包括身体运动、器官压力和生物标志物。在一个小设备中有效利用空间是增加可穿戴设备功能的一个有希望的解决方案。通过将微流体系统集成到可穿戴设备中,将复杂的结构嵌入到一个设计中成为可能,并且可以在有限的设备体积内实现多功能分析。本文综述了已报道的微流体可穿戴设备,介绍了不同生物流体的应用,讨论了设计策略和传感原理的特点,并重点介绍了每种设备的引人注目的配置。这篇综述旨在提供最近先进的微流体可穿戴设备的详细总结。先进关键部件的概述是未来微流控可穿戴设备发展的基础。
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引用次数: 5
期刊
Annual review of analytical chemistry (Palo Alto, Calif.)
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