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Emerging Chemical Methods for Petroleum and Petroleum-Derived Dissolved Organic Matter Following the Deepwater Horizon Oil Spill. 深水地平线石油泄漏后石油和石油衍生溶解有机物的新化学方法。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091522-110825
Phoebe Zito, David C Podgorski, Matthew A Tarr

Despite the fact that oil chemistry and oils spills have been studied for many years, there are still emerging techniques and unknown processes to be explored. The 2010 Deepwater Horizon oil spill in the Gulf of Mexico resulted in a revival of oil spill research across a wide range of fields. These studies provided many new insights, but unanswered questions remain. Over 1,000 journal articles related to the Deepwater Horizon spill are indexed by the Chemical Abstract Service. Numerous ecological, human health, and organismal studies were published. Analytical tools applied to the spill include mass spectrometry, chromatography, and optical spectroscopy. Owing to the large scale of studies, this review focuses on three emerging areas that have been explored but remain underutilized in oil spill characterization: excitation-emission matrix spectroscopy, black carbon analysis, and trace metal analysis using inductively coupled plasma mass spectrometry.

尽管人们已经对石油化学和石油泄漏进行了多年的研究,但仍有新兴的技术和未知的过程有待探索。2010年发生在墨西哥湾的深水地平线石油泄漏事件导致了石油泄漏研究在各个领域的复兴。这些研究提供了许多新的见解,但仍有未解决的问题。化学文摘服务收录了1000多篇与深水地平线漏油事件相关的期刊文章。发表了许多关于生态、人类健康和有机体的研究。用于泄漏的分析工具包括质谱法、色谱法和光谱学。由于研究规模大,本文重点介绍了三个新兴领域,这些领域已经被探索,但在溢油表征中仍未得到充分利用:激发发射矩阵光谱、黑碳分析和使用电感耦合等离子体质谱分析的痕量金属分析。
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引用次数: 0
Recent Advances in Single-Molecule Tracking and Imaging Techniques. 单分子跟踪和成像技术的最新进展。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091922-073057
Trung Duc Nguyen, Yuan-I Chen, Limin H Chen, Hsin-Chih Yeh

Since the early 1990s, single-molecule detection in solution at room temperature has enabled direct observation of single biomolecules at work in real time and under physiological conditions, providing insights into complex biological systems that the traditional ensemble methods cannot offer. In particular, recent advances in single-molecule tracking techniques allow researchers to follow individual biomolecules in their native environments for a timescale of seconds to minutes, revealing not only the distinct pathways these biomolecules take for downstream signaling but also their roles in supporting life. In this review, we discuss various single-molecule tracking and imaging techniques developed to date, with an emphasis on advanced three-dimensional (3D) tracking systems that not only achieve ultrahigh spatiotemporal resolution but also provide sufficient working depths suitable for tracking single molecules in 3D tissue models. We then summarize the observables that can be extracted from the trajectory data. Methods to perform single-molecule clustering analysis and future directions are also discussed.

自 20 世纪 90 年代初以来,室温溶液中的单分子检测技术使人们能够直接观察单个生物分子在生理条件下的实时工作情况,从而深入了解复杂的生物系统,这是传统的集合方法所无法提供的。特别是,单分子追踪技术的最新进展使研究人员能够在数秒至数分钟的时间尺度内追踪单个生物分子在其原生环境中的活动,不仅揭示了这些生物分子在下游信号传导过程中的独特路径,还揭示了它们在支持生命方面的作用。在这篇综述中,我们将讨论迄今为止开发的各种单分子追踪和成像技术,重点是先进的三维(3D)追踪系统,它不仅能实现超高的时空分辨率,还能提供足够的工作深度,适合在三维组织模型中追踪单分子。然后,我们总结了可从轨迹数据中提取的观测值。我们还讨论了进行单分子聚类分析的方法和未来发展方向。
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引用次数: 0
Low-Cost Microfluidic Systems for Detection of Neglected Tropical Diseases. 用于检测被忽视热带病的低成本微流体系统。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091522-024759
Kemilly M P Pinheiro, Bárbara G S Guinati, Nikaele S Moreira, Wendell K T Coltro

Neglected tropical diseases (NTDs) affect tropical and subtropical countries and are caused by viruses, bacteria, protozoa, and helminths. These kinds of diseases spread quickly due to the tropical climate and limited access to clean water, sanitation, and health care, which make exposed people more vulnerable. NTDs are reported to be difficult and inefficient to diagnose. As mentioned, most NTDs occur in countries that are socially vulnerable, and the lack of resources and access to modern laboratories and equipment intensify the difficulty of diagnosis and treatment, leading to an increase in the mortality rate. Portable and low-cost microfluidic systems have been widely applied for clinical diagnosis, offering a promising alternative that can meet the needs for fast, affordable, and reliable diagnostic tests in developing countries. This review provides a critical overview of microfluidic devices that have been reported in the literature for the detection of the most common NTDs over the past 5 years.

被忽视的热带病(NTDs)影响热带和亚热带国家,由病毒、细菌、原生动物和蠕虫引起。由于热带气候以及获得清洁水、卫生设施和医疗保健的机会有限,这类疾病传播迅速,使接触者更容易受到伤害。据报道,被忽视热带病诊断困难且效率低下。如前所述,大多数被忽视的热带病发生在社会脆弱的国家,缺乏资源和获得现代实验室和设备加剧了诊断和治疗的困难,导致死亡率上升。便携式、低成本的微流控系统已广泛应用于临床诊断,为满足发展中国家对快速、负担得起和可靠的诊断测试的需求提供了一种有前途的替代方案。本文综述了过去5年来文献中报道的用于检测最常见ntd的微流控装置。
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引用次数: 1
Efficient Validation Strategies in Environmental Analytical Chemistry: A Focus on Organic Micropollutants in Water Samples. 环境分析化学的有效验证策略:对水样中有机微污染物的关注。
Pub Date : 2023-06-14 DOI: 10.1146/annurev-anchem-091222-112115
Félix Hernández, David Fabregat-Safont, Marina Campos-Mañas, José Benito Quintana

This article critically reviews analytical method validation and quality control applied to the environmental chemistry field. The review focuses on the determination of organic micropollutants (OMPs), specifically emerging contaminants and pesticides, in the aquatic environment. The analytical technique considered is (gas and liquid) chromatography coupled to mass spectrometry (MS), including high-resolution MS for wide-scope screening purposes. An analysis of current research practices outlined in the literature has been performed, and key issues and analytical challenges are identified and critically discussed. It is worth emphasizing the lack of specific guidelines applied to environmental analytical chemistry and the minimal regulation of OMPs in waters, which greatly affect method development and performance, requirements for method validation, and the subsequent application to samples. Finally, a proposal is made for method validation and data reporting, which can be understood as starting points for further discussion with specialists in environmental analytical chemistry.

本文综述了环境化学领域中分析方法验证和质量控制的应用。综述了水生环境中有机微污染物(OMPs)的测定,特别是新出现的污染物和农药。考虑的分析技术是(气液)色谱耦合质谱(MS),包括用于大范围筛选目的的高分辨率MS。对文献中概述的当前研究实践进行了分析,并确定了关键问题和分析挑战,并进行了批判性讨论。值得强调的是,缺乏适用于环境分析化学的具体指南和对水中omp的最低限度监管,这极大地影响了方法的开发和性能、方法验证的要求以及随后对样品的应用。最后,提出了方法验证和数据报告的建议,这可以理解为与环境分析化学专家进一步讨论的起点。
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引用次数: 3
Quantitative Stimulated Raman Scattering Microscopy: Promises and Pitfalls. 定量受激拉曼散射显微镜:承诺和缺陷。
Pub Date : 2022-06-13 DOI: 10.1146/annurev-anchem-061020-015110
Bryce Manifold, Dan Fu

Since its first demonstration, stimulated Raman scattering (SRS) microscopy has become a powerful chemical imaging tool that shows promise in numerous biological and biomedical applications. The spectroscopic capability of SRS enables identification and tracking of specific molecules or classes of molecules, often without labeling. SRS microscopy also has the hallmark advantage of signal strength that is directly proportional to molecular concentration, allowing for in situ quantitative analysis of chemical composition of heterogeneous samples with submicron spatial resolution and subminute temporal resolution. However, it is important to recognize that quantification through SRS microscopy requires assumptions regarding both system and sample. Such assumptions are often taken axiomatically, which may lead to erroneous conclusions without proper validation. In this review, we focus on the tacitly accepted, yet complex, quantitative aspect of SRS microscopy. We discuss the various approaches to quantitative analysis, examples of such approaches, challenges in different systems, and potential solutions. Through our examination of published literature, we conclude that a scrupulous approach to experimental design can further expand the powerful and incisive quantitative capabilities of SRS microscopy.

自首次演示以来,受激拉曼散射(SRS)显微镜已成为一种强大的化学成像工具,在许多生物学和生物医学应用中显示出前景。SRS的光谱能力可以识别和跟踪特定的分子或分子类别,通常不需要标记。SRS显微镜还具有信号强度与分子浓度成正比的标志性优势,允许以亚微米空间分辨率和亚分钟时间分辨率对异质样品的化学成分进行原位定量分析。然而,重要的是要认识到,通过SRS显微镜进行定量需要对系统和样品进行假设。这样的假设通常是不言自明的,这可能导致没有适当验证的错误结论。在这篇综述中,我们集中在默认的,但复杂的,定量方面的SRS显微镜。我们讨论了定量分析的各种方法,这些方法的例子,不同系统中的挑战,以及潜在的解决方案。通过对已发表文献的研究,我们得出结论,严谨的实验设计方法可以进一步扩展SRS显微镜强大而敏锐的定量能力。
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引用次数: 7
Saliva Diagnostics. 唾液诊断。
Pub Date : 2022-06-13 DOI: 10.1146/annurev-anchem-061020-123959
Taichiro Nonaka, David T W Wong

Cancer remains one of the leading causes of death, and early detection of this disease is crucial for increasing survival rates. Although cancer can be diagnosed following tissue biopsy, the biopsy procedure is invasive; liquid biopsy provides an alternative that is more comfortable for the patient. While blood, urine, and cerebral spinal fluid can all be used as a source of liquid biopsy, saliva is an ideal source of body fluid that is readily available and easily collected in the most noninvasive manner. Characterization of salivary constituents in the disease setting provides critical data for understanding pathophysiology and the evaluation of diagnostic potential. The aim of saliva diagnostics is therefore to develop a rapid and noninvasive detection of oral and systemic diseases that could be used together with compact analysis systems in the clinic to facilitate point-of-care diagnostics.

癌症仍然是导致死亡的主要原因之一,而早期发现这种疾病对于提高存活率至关重要。虽然通过组织活检可以诊断癌症,但活检过程是侵入性的,而液体活检为患者提供了一种更舒适的替代方法。虽然血液、尿液和脑脊液都可用作液体活检的来源,但唾液是最理想的体液来源,唾液可随时获取,且易于以最无创的方式收集。确定唾液成分在疾病环境中的特征,可为了解病理生理学和评估诊断潜力提供重要数据。因此,唾液诊断的目的是开发一种快速、无创的口腔和全身疾病检测方法,该方法可与紧凑型分析系统一起用于临床,以促进护理点诊断。
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引用次数: 0
Mass Spectrometry Measurements of Neuropeptides: From Identification to Quantitation. 神经肽的质谱测定:从鉴定到定量。
Pub Date : 2022-06-13 Epub Date: 2022-03-24 DOI: 10.1146/annurev-anchem-061020-022048
Eduardo A De La Toba, Sara E Bell, Elena V Romanova, Jonathan V Sweedler

Neuropeptides (NPs), a unique class of neuronal signaling molecules, participate in a variety of physiological processes and diseases. Quantitative measurements of NPs provide valuable information regarding how these molecules are differentially regulated in a multitude of neurological, metabolic, and mental disorders. Mass spectrometry (MS) has evolved to become a powerful technique for measuring trace levels of NPs in complex biological tissues and individual cells using both targeted and exploratory approaches. There are inherent challenges to measuring NPs, including their wide endogenous concentration range, transport and postmortem degradation, complex sample matrices, and statistical processing of MS data required for accurate NP quantitation. This review highlights techniques developed to address these challenges and presents an overview of quantitative MS-based measurement approaches for NPs, including the incorporation of separation methods for high-throughput analysis, MS imaging for spatial measurements, and methods for NP quantitation in single neurons.

神经肽(NPs)是一类独特的神经元信号分子,参与多种生理过程和疾病。NPs的定量测量提供了关于这些分子如何在多种神经、代谢和精神疾病中受到差异调节的有价值的信息。质谱(MS)已经发展成为一种强大的技术,用于测量复杂生物组织和单个细胞中痕量NPs的水平,使用靶向和探索性方法。测量NPs存在固有的挑战,包括其广泛的内源性浓度范围,运输和死后降解,复杂的样品矩阵,以及准确的NP定量所需的MS数据的统计处理。这篇综述重点介绍了为解决这些挑战而开发的技术,并概述了基于质谱的神经元神经元定量测量方法,包括用于高通量分析的分离方法、用于空间测量的质谱成像和用于单个神经元神经元神经元神经元定量的方法。
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引用次数: 2
Technologies for Frugal and Sensitive Point-of-Care Immunoassays. 低成本、高灵敏度的护理点免疫测定技术。
Pub Date : 2022-06-13 Epub Date: 2022-02-25 DOI: 10.1146/annurev-anchem-061020-123817
David S Kinnamon, Jacob T Heggestad, Jason Liu, Ashutosh Chilkoti

Immunoassays are a powerful tool for sensitive and quantitative analysis of a wide range of biomolecular analytes in the clinic and in research laboratories. However, enzyme-linked immunosorbent assay (ELISA)-the gold-standard assay-requires significant user intervention, time, and clinical resources, making its deployment at the point-of-care (POC) impractical. Researchers have made great strides toward democratizing access to clinical quality immunoassays at the POC and at an affordable price. In this review, we first summarize the commercially available options that offer high performance, albeit at high cost. Next, we describe strategies for the development of frugal POC assays that repurpose consumer electronics and smartphones for the quantitative detection of analytes. Finally, we discuss innovative assay formats that enable highly sensitive analysis in the field with simple instrumentation.

免疫测定是临床和研究实验室对各种生物分子分析物进行灵敏定量分析的有力工具。然而,酶联免疫吸附试验(ELISA)--黄金标准的检测方法--需要大量的用户干预、时间和临床资源,因此在医疗点(POC)使用这种方法并不现实。研究人员在以可承受的价格在 POC 上普及临床质量免疫测定方面取得了长足进步。在这篇综述中,我们首先总结了市场上可供选择的高性价比产品。接下来,我们介绍了开发节俭型 POC 检测方法的策略,这些方法可将消费电子产品和智能手机重新用于分析物的定量检测。最后,我们讨论了创新的检测方法,这些方法可以利用简单的仪器在现场进行高灵敏度分析。
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引用次数: 0
Surface Analysis Techniques in Forensic Science: Successes, Challenges, and Opportunities for Operational Deployment. 法医学中的表面分析技术:成功、挑战和操作部署的机遇。
Pub Date : 2022-06-13 Epub Date: 2022-02-15 DOI: 10.1146/annurev-anchem-061020-124221
Melanie J Bailey, Marcel de Puit, Francesco Saverio Romolo

Surface analysis techniques have rapidly evolved in the last decade. Some of these are already routinely used in forensics, such as for the detection of gunshot residue or for glass analysis. Some surface analysis approaches are attractive for their portability to the crime scene. Others can be very helpful in forensic laboratories owing to their high spatial resolution, analyte coverage, speed, and specificity. Despite this, many proposed applications of the techniques have not yet led to operational deployment. Here, we explore the application of these techniques to the most important traces commonly found in forensic casework. We highlight where there is potential to add value and outline the progress that is needed to achieve operational deployment. We consider within the scope of this review surface mass spectrometry, surface spectroscopy, and surface X-ray spectrometry. We show how these tools show great promise for the analysis of fingerprints, hair, drugs, explosives, and microtraces.

近十年来,表面分析技术发展迅速。其中一些已经在法医学中常规使用,例如用于检测枪击残留物或玻璃分析。一些表面分析方法因其可移植到犯罪现场而具有吸引力。由于其高空间分辨率,分析物覆盖范围,速度和特异性,其他方法在法医实验室中非常有用。尽管如此,这些技术的许多拟议应用尚未导致可操作的部署。在这里,我们将探讨这些技术在法医案件工作中最常见的重要痕迹中的应用。我们强调了有可能增加价值的地方,并概述了实现业务部署所需的进展。我们在这篇综述的范围内考虑表面质谱,表面光谱和表面x射线光谱。我们展示了这些工具如何在分析指纹、头发、毒品、爆炸物和微痕迹方面显示出巨大的希望。
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引用次数: 3
Label-Free Super-Resolution Imaging Techniques. 无标签超分辨率成像技术。
Pub Date : 2022-06-13 DOI: 10.1146/annurev-anchem-061020-014723
Ryan E Leighton, Ariel M Alperstein, Renee R Frontiera

Biological and material samples contain nanoscale heterogeneities that are unresolvable with conventional microscopy techniques. Super-resolution fluorescence methods can break the optical diffraction limit to observe these features, but they require samples to be fluorescently labeled. Over the past decade, progress has been made toward developing super-resolution techniques that do not require the use of labels. These label-free techniques span a variety of different approaches, including structured illumination, transient absorption, infrared absorption, and coherent Raman spectroscopies. Many draw inspiration from widely successful fluorescence-based techniques such as stimulated emission depletion (STED) microscopy, photoactivated localization microscopy (PALM), and stochastic optical reconstruction microscopy (STORM). In this review, we discuss the progress made in these fields along with the current challenges and prospects in reaching resolutions comparable to those achieved with fluorescence-based methods.

生物和材料样品含有纳米级的非均质性,这是传统显微镜技术无法解决的。超分辨率荧光法可以突破光学衍射极限来观察这些特征,但需要对样品进行荧光标记。在过去的十年中,在开发不需要使用标签的超分辨率技术方面取得了进展。这些无标签技术涵盖了各种不同的方法,包括结构照明、瞬态吸收、红外吸收和相干拉曼光谱。许多人从广泛成功的基于荧光的技术中获得灵感,如受激发射耗尽显微镜(STED)、光激活定位显微镜(PALM)和随机光学重建显微镜(STORM)。在这篇综述中,我们讨论了在这些领域取得的进展,以及目前的挑战和前景,以达到与基于荧光的方法所取得的分辨率相当。
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引用次数: 11
期刊
Annual review of analytical chemistry (Palo Alto, Calif.)
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