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The Limits of Our Explanation: A Case Study in Myxococcus xanthus Cooperation. 我们解释的局限性:以黄粘球菌合作为例。
IF 1.9 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2025-01-01 Epub Date: 2024-11-12 DOI: 10.1007/s13752-024-00479-z
Saira Khan

In this article, I demonstrate two ways in which our major theories of the evolution of cooperation may fail to capture particular social phenomena. The first shortcoming of our current major theories stems from the possibility of mischaracterizing the cooperative problem in game theory. The second shortcoming of our current major theories is the insensitivity of these explanatory models to ecological and genomic context. As a case study to illustrate these points, I will use the cooperative interaction of a species of myxobacteria called Myxococcus xanthus. M. xanthus cooperate in many areas of their life cycle-in quorum sensing, social motility, fruiting body formation, and predation. I focus in particular on predation as we have not yet discovered an adequate explanation of how they sustain cooperative predation in the face of developmental cheats. In explaining why we have not, I draw generalizable conclusions that shed light on our use of simplified models to explain real-world behaviors in a variety of organisms.

在这篇文章中,我将展示我们的主要合作进化理论可能无法捕捉特定社会现象的两种方式。我们目前主要理论的第一个缺点是可能错误地描述博弈论中的合作问题。我们目前主要理论的第二个缺点是这些解释模型对生态和基因组背景不敏感。作为一个案例研究来说明这些观点,我将使用一种叫做黄粘球菌的黏菌的合作相互作用。黄豆在其生命周期的许多领域进行合作——群体感应、社会运动、子实体形成和捕食。我特别关注捕食,因为我们还没有发现一个充分的解释,它们是如何在面对发育欺骗时保持合作捕食的。在解释为什么我们没有,我得出概括的结论,阐明我们使用简化模型来解释各种生物体的现实世界行为。
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引用次数: 0
Evolution, Complexity, and Life History Theory. 进化、复杂性和生命史理论。
IF 1.9 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2025-01-01 Epub Date: 2025-01-14 DOI: 10.1007/s13752-024-00487-z
Walter Veit, Samuel J L Gascoigne, Roberto Salguero-Gómez

In this article, we revisit the longstanding debate of whether there is a pattern in the evolution of organisms towards greater complexity, and how this hypothesis could be tested using an interdisciplinary lens. We argue that this debate remains alive today due to the lack of a quantitative measure of complexity that is related to the teleonomic (i.e., goal-directed) nature of living systems. Further, we argue that such a biological measure of complexity can indeed be found in the vast literature produced within life history theory. We propose that an ideal method to quantify this complexity lies within life history strategies (i.e., schedules of survival and reproduction across an organism's life cycle), as it is precisely these strategies that are under selection to optimize the organism's fitness. In this context, we set an agenda for future steps: (1) how this complexity can be measured mathematically, and (2) how we can engage in a comparative analysis of this complexity across species to investigate the evolutionary forces driving increases or, for that matter, decreases in teleonomic complexity.

在这篇文章中,我们重新审视了长期以来关于生物向更复杂的进化是否存在一种模式的争论,以及如何使用跨学科的视角来检验这一假设。我们认为,由于缺乏与生命系统的目的论(即目标导向)性质相关的复杂性的定量衡量,这种争论今天仍然存在。此外,我们认为这种复杂性的生物学度量确实可以在生命史理论中产生的大量文献中找到。我们提出,量化这种复杂性的理想方法在于生活史策略(即生物体生命周期中的生存和繁殖时间表),因为正是这些策略在选择下优化生物体的适应性。在这种背景下,我们为未来的步骤设定了一个议程:(1)如何用数学方法测量这种复杂性,以及(2)我们如何对物种间的这种复杂性进行比较分析,以研究驱动teleonomic复杂性增加或减少的进化力量。
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引用次数: 0
Concepts of Agency: Introduction to the Thematic Section 代理的概念:专题部分介绍
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-01-04 DOI: 10.1007/s13752-023-00454-0
Lenny Moss
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引用次数: 0
Context Matters: A Response to Autzen and Okasha's Reply to Takacs and Bourrat. 语境很重要:回应 Autzen 和 Okasha 对 Takacs 和 Bourrat 的回复。
IF 1.9 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-01-01 Epub Date: 2024-02-26 DOI: 10.1007/s13752-024-00455-7
Peter Takacs, Pierrick Bourrat

In a recent reply to Takacs and Bourrat's article (Biol Philos 37:12, 2022), Autzen and Okasha (Biol Philos 37:37, 2022) question our characterization of the relationship between the geometric mean and arithmetic mean measures of fitness. We here take issue with the claim that our characterization falls prey to the mistakes they highlight. Briefly revisiting what Takacs and Bourrat (Biol Philos 37:12, 2022) accomplished reveals that the key issue of difference concerns cases of deterministic but nonconstant growth. Restricting focus to such cases shows that there is in fact no reason for disagreement.

在最近对 Takacs 和 Bourrat 的文章(Biol Philos 37:12, 2022)的回复中,Autzen 和 Okasha(Biol Philos 37:37, 2022)质疑了我们对几何平均数与算术平均数之间关系的描述。我们在此不同意他们的说法,即我们的表征陷入了他们所强调的错误。简单回顾一下塔卡茨和布拉特(Biol Philos 37:12, 2022)的研究成果,就会发现分歧的关键问题涉及确定性但非恒定增长的情况。如果把焦点局限于这种情况,就会发现事实上没有理由存在分歧。
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引用次数: 0
Agency as an Inherent Property of Living Organisms. 能动性是生物体的固有属性。
IF 1.9 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-01-01 Epub Date: 2024-08-14 DOI: 10.1007/s13752-024-00471-7
Bernd Rosslenbroich, Susanna Kümmell, Benjamin Bembé

A central characteristic of living organisms is their agency, that is, their intrinsic activity, both in terms of their basic life processes and their behavior in the environment. This aspect is currently a subject of debate and this article provides an overview of some of the relevant publications on this topic. We develop the argument that agency is immanent in living organisms. There is no life without agency. Even the basic life processes are an intrinsic activity, which we call the organismic level of agency. In addition to this we describe several further levels. These capture different qualities that occur or transform during evolution. In addition to the organismic level, we propose an ontogenetic level, a level of directed agency, directed agency with extended flexibility, and a level that includes the capacities to follow preconceived goals. A further property of organisms is their autonomy. It has been shown that the capacity for autonomy changed during evolution. Here we propose that the two organismic properties autonomy and agency are closely related. Enhanced physiological and behavioral autonomy extends the scope of self-generated, flexible actions and reactions. The increase in autonomy through the evolution of a widened scope of behavioral possibilities and versatility in organisms coincides with extended levels of agency. Especially the human organization, including the sophisticated brain, is the basis for an extended level of agency referring to the capacities to follow preconceived goals. However, it is important for the understanding of the phenomenon of agency not only to assume this latter form, but also to look at the different levels of agency.

生物体的一个中心特征是它们的能动性,也就是说,它们的内在活动,无论是从它们的基本生命过程还是它们在环境中的行为来看。这方面目前是一个争论的主题,本文概述了一些有关这一主题的相关出版物。我们提出能动性是生物体内固有的论点。没有能动性就没有生活。即使是基本的生命过程也是一种内在的活动,我们称之为有机体层面的能动性。除此之外,我们还描述了几个进一步的层次。这些捕获了在进化过程中发生或转变的不同品质。除了有机体层面,我们还提出了个体发生层面、定向能动性层面、具有扩展灵活性的定向能动性层面,以及包括遵循预设目标的能力的层面。有机体的另一个特性是它们的自主性。研究表明,自主能力在进化过程中发生了变化。在此,我们提出自主性和能动性这两个有机属性是密切相关的。增强的生理和行为自主性扩展了自我产生、灵活的行动和反应的范围。通过扩大行为可能性的范围和生物体的多功能性的进化,自主性的增加与代理的扩展水平相一致。特别是人类组织,包括复杂的大脑,是一个扩展层次的代理的基础,指的是遵循预先设想的目标的能力。然而,重要的是要理解代理现象,不仅要假设后一种形式,而且要考虑代理的不同层次。
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引用次数: 0
Correction to: Richard Lewontin and Theodosius Dobzhansky: Genetics, Race, and the Anxiety of Influence 更正为:理查德-莱旺廷和狄奥多西-多布占斯基:遗传学、种族和影响的焦虑
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2023-12-18 DOI: 10.1007/s13752-023-00453-1
David Depew
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引用次数: 0
Referees for Volume 18 (Issues 1–4), 2023 第 18 卷(第 1-4 期)(2023 年)的裁判员
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2023-12-04 DOI: 10.1007/s13752-023-00451-3
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引用次数: 0
From the Method of Division to the Theory of Transformations: Thompson After Aristotle, and Aristotle After Thompson 从分割法到变换理论:亚里士多德之后的汤普森和汤普森之后的亚里士多德
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2023-11-27 DOI: 10.1007/s13752-023-00450-4
Laura Nuño de la Rosa, James G. Lennox
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引用次数: 0
Richard Lewontin and Theodosius Dobzhansky: Genetics, Race, and the Anxiety of Influence 理查德-莱旺廷和狄奥多西-多布占斯基:遗传学、种族和影响的焦虑
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2023-11-23 DOI: 10.1007/s13752-023-00452-2
David Depew
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引用次数: 0
Agency, Goal-Directed Behavior, and Part-Whole Relationships in Biological Systems 生物系统中的代理、目标导向行为和部分-整体关系
Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2023-11-08 DOI: 10.1007/s13752-023-00447-z
Richard Watson
Abstract In this essay we aim to present some considerations regarding a minimal but concrete notion of agency and goal-directed behavior that are useful for characterizing biological systems at different scales. These considerations are a particular perspective, bringing together concepts from dynamical systems, combinatorial problem-solving, and connectionist learning with an emphasis on the relationship between parts and wholes. This perspective affords some ways to think about agents that are concrete and quantifiable, and relevant to some important biological issues. Instead of advocating for a strict definition of minimally agential characteristics, we focus on how (even for a modest notion of agency) the agency of a system can be more than the sum of the agency of its parts. We quantify this in terms of the problem-solving competency of a system with respect to resolution of the frustrations between its parts. This requires goal-directed behavior in the sense of delayed gratification, i.e., taking dynamical trajectories that forego short-term gains (or sustain short-term stress or frustration) in favor of long-term gains. In order for this competency to belong to the system (rather than to its parts or given by its construction or design), it can involve distributed systemic knowledge that is acquired through experience, i.e., changes in the organization of the relationships among its parts (without presupposing a system-level reward function for such changes). This conception of agency helps us think about the ways in which cells, organisms, and perhaps other biological scales, can be agential (i.e., more agential than their parts) in a quantifiable sense, without denying that the behavior of the whole depends on the behaviors of the parts in their current organization.
在这篇文章中,我们旨在提出一些关于代理和目标导向行为的最小但具体的概念的考虑,这些概念有助于在不同尺度上表征生物系统。这些考虑是一个特殊的视角,将动力系统、组合问题解决和连接主义学习的概念结合在一起,强调部分与整体之间的关系。这种观点提供了一些思考具体的、可量化的、与一些重要的生物学问题相关的因素的方法。我们不提倡对最低限度代理特征进行严格定义,而是关注一个系统的代理如何(即使对于一个适度的代理概念)超过其各部分代理的总和。我们根据一个系统的解决问题的能力来量化它,这个能力是关于解决它的各个部分之间的挫折的。这需要在延迟满足意义上的目标导向行为,即采取动态轨迹,放弃短期收益(或维持短期压力或挫折),以支持长期收益。为了使这种能力属于系统(而不是属于它的部分或由它的构造或设计给出),它可以涉及通过经验获得的分布式系统知识,即,在其部分之间关系的组织中的变化(没有预先假设系统级奖励功能的这种变化)。能动性的概念帮助我们思考细胞、有机体和其他生物尺度在可量化意义上具有能动性的方式(即,比它们的部分更具能动性),而不否认整体的行为取决于它们当前组织中部分的行为。
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Biological theory
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