The management of papillary thyroid cancer (PTC), a malignancy accounting for over 80% of thyroid cancers, has long relied on standardized surgical and radioiodine therapies.1-3 Yet, a critical unmet challenge persists: the unpredictable progression of lymph node metastasis (LNM), which correlates with increased recurrence and mortality. Current risk stratification systems, based on clinicopathological features, fail to explain the molecular mechanisms underlying aggressive LNM in subsets of patients. A study by Xiao et al. published in Clinical and Translational Medicine, titled “Single-cell RNA-sequencing and spatial transcriptomic analysis reveal a distinct population of APOE− cells yielding pathological lymph node metastasis in papillary thyroid cancer”, provides groundbreaking insights into this issue.4 By integrating single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics, the authors identify a previously unrecognized APOE− cell subpopulation that drives metastatic dissemination, offering a paradigm shift in understanding PTC progression. This work not only advances molecular oncology but also underscores both the transformative potential and inherent complexities of high-resolution spatial genomics in clinical translation.
In PTC, as with many solid tumors, the process of metastasis is multifaceted and involves intricate interactions between cancer cells, stromal components, and the immune system.5, 6 scRNA-seq and spatial transcriptomics have emerged as powerful tools to dissect the heterogeneity that exists within a tumor, enabling researchers to profile the transcriptome of individual cells and to map gene expression patterns within the tumor microenvironment with high spatial resolution.7, 8 The study in question utilized these cutting-edge technologies to interrogate the cellular composition of PTC tumors and lymph node metastases. First, scRNA-seq was performed on tumor samples from PTC patients with aggressive LNM, revealing remarkable intratumoral heterogeneity. A subset of cells exhibiting downregulated APOE expression, a gene traditionally associated with lipid metabolism and immune modulation, was identified as a hallmark of metastatic propensity. Spatial transcriptomic analysis further localized these APOE− cells to invasive tumor margins, where they interacted with immunosuppressive macrophages and fibroblasts. This spatial resolution confirmed that APOE− cells serve as “metastatic hubs,” orchestrating a microenvironment conducive to lymphatic invasion. The identification of APOE− cells as key drivers of PTC metastasis thus represents a novel and intriguing finding.
The promise of this study lies in its potential to revolutionize the management of PTC patients. By identifying APOE− cells as a biomarker for lymph node metastasis