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Towards a one-time cure for Fabry disease: Lentivirus-mediated haematopoietic stem and progenitor cell gene therapy 迈向法布里病的一次性治愈:慢病毒介导的造血干细胞和祖细胞基因治疗
Pub Date : 2025-03-11 DOI: 10.1002/ctd2.70042
Rina Kansal
<p>Fabry disease, also known as Anderson‒Fabry disease, is an X-linked systemic disease first described independently in Germany and England over 125 years ago, in 1898, in patients presenting with small, reddish purple telangiectatic cutaneous papules called <i>angiokeratoma corporis diffusum</i>.<span><sup>1</sup></span> Five decades later, in 1947, the concept of a lipid storage disease emerged following postmortem studies, and the abnormal lipid was identified as trihexosyl ceramide in 1963.<span><sup>1</sup></span> Subsequently, the underlying deficiency of the lysosomal enzyme α-galactosidase, which cleaves galactose from the neutral glycosphingolipid, globotriaosylceramide (Gb<sub>3</sub>) or trihexosyl ceramide, in the normal cellular degradation pathway, was identified.<span><sup>1, 2</sup></span> The enzyme activity was near-completely deficient in leukocytes in affected males and reduced in female carriers of the disease compared to normal leukocytes.<span><sup>2</sup></span> In 1978, the α-galactosidase A (<i>GLA)</i> gene, which encodes the enzyme, was found to be located in the Xq22 chromosomal region, and the gene's nucleotide sequence was identified in 1986. Gene mutations in <i>GLA</i> that do not allow enzyme expression were recognised as the fundamental cause of Fabry disease.<span><sup>3</sup></span></p><p>Although the clinical features of this inherited disease, including neurologic pain in the extremities, cutaneous angiokeratomas, hypohidrosis, and corneal opacities, are evident in childhood, the diagnosis of classic Fabry disease is often missed and delayed, with an average age of 29 years at diagnosis.<span><sup>3, 4</sup></span> The disease worsens in untreated adults due to the progressive accumulation of glycosphingolipids in various cells across multiple organ systems, leading to cardiovascular, cerebrovascular, and renal damage that shortens lifespan. Females exhibit variability in disease severity and may be asymptomatic or experience complications like affected males. Until 2001, no treatment was available to halt disease progression, when enzyme replacement therapy (ERT) was approved for treating Fabry disease in Europe, followed by approval in the United States in 2003.<span><sup>4</sup></span> Nonetheless, ERT is very expensive, requires biweekly infusions for life, and its efficacy may be reduced if the patient develops an antibody response. Migalastat, a pharmacologic chaperone therapy approved for adults with Fabry disease since 2016, is only applicable for 30%–50% of patients who have <i>GLA</i> mutations that are amenable to increase the activity of the deficient enzyme with the drug; furthermore, the in vitro determinations of amenability do not translate to in vivo drug efficacy.<span><sup>5</sup></span></p><p>Medin et al. began their gene therapy efforts more than two decades ago with the vision of developing a one-time cure for Fabry disease.<span><sup>6, 7</sup></span> In an accompanying article in thi
法布里病,也称为安德森-法布里病,是一种x系全身性疾病,于125年前的1898年在德国和英国首次被独立描述,患者表现为小的、红紫色毛细血管扩张性皮肤丘疹,称为公司弥漫性血管角化瘤50年后的1947年,在死后研究中出现了脂质储存疾病的概念,并于1963年确定异常脂质为三己糖基神经酰胺。3.1随后,在正常细胞降解途径中,发现了溶酶体酶α-半乳糖苷酶的潜在缺乏,该酶能从中性鞘糖脂、球状三己糖神经酰胺(Gb3)或三己糖基神经酰胺中分离半乳糖。1,2与正常白细胞相比,患病男性白细胞中的酶活性几乎完全缺乏,而患病女性白细胞中的酶活性则降低1978年发现编码该酶的α-半乳糖苷酶A (α-半乳糖苷酶A, GLA)基因位于Xq22染色体区域,1986年鉴定出该基因的核苷酸序列。GLA中不允许酶表达的基因突变被认为是法布里病的根本原因。虽然这种遗传性疾病的临床特征,包括四肢神经性疼痛、皮肤血管角化瘤、多汗症和角膜混浊,在儿童时期很明显,但经典法布里病的诊断经常被遗漏和延迟,诊断时的平均年龄为29岁。3,4在未经治疗的成年人中,由于鞘糖脂在多个器官系统的各种细胞中逐渐积累,导致心、脑血管和肾脏损伤,缩短寿命,疾病会恶化。女性表现出疾病严重程度的差异,可能无症状或像受影响的男性一样出现并发症。直到2001年,当酶替代疗法(ERT)在欧洲被批准用于治疗法布里病(Fabry disease),并于2003年在美国获得批准时,还没有可用的治疗方法来阻止疾病进展。尽管如此,ERT非常昂贵,需要每两周输注一次,并且如果患者产生抗体反应,其疗效可能会降低。Migalastat是一种药理学伴侣疗法,自2016年以来被批准用于成人法布里病(Fabry disease),仅适用于30%-50%的GLA突变患者,这些突变可以通过药物增加缺陷酶的活性;此外,体外测定的适应性不能转化为体内药物功效。medin等人在二十多年前就开始了他们的基因治疗工作,他们的愿景是开发一种一次性治疗法布里病的方法。在该杂志的一篇文章中,Medin的团队描述了加拿大法布里病临床研究和治疗(FACTs)试验的5年研究结束结果,这是第一个基因治疗试验-单组,非随机I期临床试验(NCT02800070) -介导的体外重组慢病毒诱导的自体造血干细胞和前体细胞(HSPC)-将完成法布里病。8,9在这种疗法中,病毒诱导的具有功能性GLA的骨髓源性HSPCs分化为循环髓系细胞,其分泌α-半乳糖苷酶A,通过代谢协同作用或交叉校正起作用,如图1.6所示,8酶以甘露糖-6-磷酸受体依赖的方式进入各种组织中未校正的细胞,使其能够降解非造血细胞中积累的鞘糖脂底物。此前,该疗法的临床前小鼠模型显示,与正常CD34+ HSPCs相比,慢病毒诱导的CD34+富集HSPCs具有更高水平的α-半乳糖苷酶活性,同时底物积累减少FACTs试验于2016年启动,旨在评估作者在至少过去25年中开发的治疗法布里病的慢病毒基因疗法的安全性。5名经基因分型证实具有4种不同的经典法布里病突变的成年男性均接受ERT治疗。所有患者都收集了他们的骨髓造血干细胞,并接受了低强度的melphalan的非清髓调节。更强的骨髓消融被认为是不必要的,因为对于代谢性疾病,即使酶水平的部分改善也足以停止ERT。用诱导α-半乳糖苷酶a表达的重组慢病毒转导CD34+富集的HSPCs,患者接受转染的CD34+富集的HSPCs输注作为基因治疗。循环α-半乳糖苷酶活性在输注后6-8天内开始出现,并且这种活性在所有患者中持续5年。白细胞α-半乳糖苷酶特异性活性与血浆酶活性相当。 载体拷贝数(估计每个细胞整合位点的平均数量)在所有治疗患者的白细胞中进行了分析,该数字在整个研究期间保持稳定。脱乙酰化Gb3 (lyso-Gb3)被认为是一种比血浆Gb3更易溶解的代谢物,与法布里病的预后相关;α-半乳糖苷酶A的表达降低了5例患者中4例的血浆Gb3水平,并稳定了所有患者的肾脏症状在3例患者血浆中抗α-半乳糖苷酶A抗体滴度最初短暂上升后,在试验早期反应性下降,抗体滴度在18个月后保持在或接近基线。所有5名患者都有资格停止ERT: 5人中有3人选择停止ERT。这种疗法耐受性良好。在治疗阶段只发生了两起严重不良事件9,此后又记录了两起不良事件8该试验被设计为一项安全性研究,并没有足够的能力来调查基因治疗与特定临床参数之间的相关性在另一种疾病的基因治疗试验中,患者出现血液病恶性肿瘤后,研究人员进行了额外的实验来研究基因治疗后的病毒整合位点这些研究提供了持续多克隆造血的证据,没有证据表明在任何患者中存在克隆优势。10 .值得注意的是,仅三名患者的ERT终止就为加拿大卫生系统节省了480万美元;这些节余将在15年后续期间增加。在他们精心策划的工作中,除了展示了安全性,Medin的团队还展示了设计和提供基因治疗的多位点模型的可行性,并在学术大学环境中进行了试验。他们未来的努力将包括更多的患者,包括更年轻的患者和女性,这无疑将被全世界的法布里病社区热切期待,以实现一次性治愈这种疾病的长期目标。作者全权负责起草和撰写本文。作者声明她没有利益冲突。这项工作没有得到任何来源的资助。不适用。
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引用次数: 0
Cell therapy based on stem cells or their extracellular vesicles during kidney graft preservation: Current state of the art and novelties 肾移植保存过程中基于干细胞或其细胞外囊泡的细胞治疗:最新的技术和创新
Pub Date : 2025-03-10 DOI: 10.1002/ctd2.70040
Nessma Chenaf-Benabdelmoumene, Thierry Hauet, Clara Steichen
<p>Transplantation often remains the best therapeutic option in terms of life quality and disease prognosis improvement to treat chronic or even acute organ failure. According to a report published by the World Health Organization in 2023,<span><sup>1</sup></span> less than 10% of the world's organ needs are covered. Focusing on the kidney, which is now the most transplanted organ in the world, the latest report of the Global Observatory on Donation and Transplantation published in 2023 (based on 2022 data)<span><sup>2</sup></span> pointed out the gap between supply and demand: there are currently more patients on the active waiting list than there are grafts available for them worldwide. Kidney grafts can come from two main different sources: living donors, which represent a minority of donations, and deceased donors. Nevertheless, the organ shortage, which has been worsening year after year, has led to extend donation criteria over the years. This means, for example, the use of deceased donors not only after brainstem death but also after unpredictable irreversible circulatory arrest with immediate cardiopulmonary resuscitation attempted by trained providers (according to the Maastricht classification, second category) and after circulatory arrest occurring based on a decision to withhold or withdraw life-sustaining treatment (according to the Maastricht classification, third category). These death circumstances are usually associated with intensive donor reanimation processes consisting in noradrenaline administration, in massive vascular filling to prevent reanimation complications such as inflammation, haemodynamic instability or acute kidney failure. Extended criteria donors also include older donors aged over 65 years and donors with comorbidities such as arterial hypertension, cardiopathy, diabetes and even chronic kidney failure. The growing need for organs may also result in organs being transported from more distant regions. In all these situations kidney grafts are more susceptible to be affected by ischaemia‒reperfusion (IR) injuries.</p><p>IR is a pathophysiological phenomenon taking place from the donor's reanimation to the recipient's transplantation. Ischaemia is induced by the sudden arrest of oxygen and nutrients supply during the organ retrieval step, which may be prolonged during organ preservation sequence depending on its modalities. Reperfusion occurs when anastomoses are performed between the graft and the recipient and refers to the massive oxygen supply in a medium, which was previously deprived of oxygen.<span><sup>3</sup></span> On a microscopic scale, this phenomenon is associated with shifts in mitochondrial metabolism and function, by a release of reactive oxidative species causing cytoskeleton destruction, complement system activation and recruitment of innate and adaptative immune cells.<span><sup>4</sup></span> Faced with these perturbations, the cell eventually dies by necrosis, phagocytosis or apoptosis. On a
通过NMP还可以实时监测移植物灌注参数、温度等项目。它也是一种提供治疗方法的方法,包括基于细胞疗法的治疗方法。在器官移植领域,近年来,细胞疗法作为移植物动态灌注保存的一种有前景的选择而出现。尽管干细胞衍生的ev已成为移植器官调节领域的一种有前景的新策略,但药物动力学和药效学方面的挑战仍然存在,以填补机制理解方面的知识空白,并且需要进一步发展分离和表征技术以促进ev的临床应用。然而,这种方法首先需要认真考虑精确的标准,以确定有IR损伤风险的器官和移植功能延迟。此外,这需要在不同中心之间更好地协调复苏,手术和临床实践。因此,可以根据供体/受体的临床情况选择最优保存方案的边缘移植物,并在移植前进行修复。这样,在未来受更严重器官短缺影响的老龄化社会中,细胞治疗方法结合移植物动态保存技术的改进可能是优化扩展标准供体或长距离移植物移植程序的补充潜在手段。NCB撰写了这份手稿的初稿;TH和CS审阅了稿件。所有作者都同意这篇综述的最终版本。不适用(审核)。
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引用次数: 0
Involvement of S100A8 and S100A9 in nonischaemic cardiomyopathy S100A8和S100A9参与非缺血性心肌病
Pub Date : 2025-03-05 DOI: 10.1002/ctd2.70039
Qiu-Yue Lin, Wen-Xi Jiang, Hui-Hua Li

The heterodimeric complex of S100 calcium binding proteins A8 and A9 (S100A8/A9, also known as Calprotectin) is constitutively expressed in myeloid neutrophils and monocytes and plays a role in the modulation of the inflammatory response and cytoskeleton rearrangement. Recently, S100A8/A9 complex has garnered significant attention as a critical alarmin involved in regulating the pathogenesis of various inflammatory cardiovascular diseases, particularly nonischaemic cardiomyopathy (NICM). Furthermore, S100A8/A9 is reportedly associated with the pathophysiological processes of myocardial ischaemia‒reperfusion injury and has also been recognised as a predictor and a potential mediator of heart failure caused by acute myocardial infarction. Recent studies have attempted to provide a comprehensive and detailed overview of the involvement of the S100A8/A9 protein in NICM, covering topics such as hypertrophic myocardial remodelling, septic and dilated cardiomyopathy, myocarditis, chemotherapeutic cardiotoxicity, senescent cardiac dysfunction and cardiac allograft rejection. Ultimately, we aimed to evaluate the application of S100A8/A9 as promising biomarkers and therapeutic strategies for the prediction, prevention and treatment of NICM.

S100钙结合蛋白A8和A9的异二聚体复合体(S100A8/A9,也称为钙保护蛋白)在髓系中性粒细胞和单核细胞中组成性表达,并在炎症反应和细胞骨架重排的调节中发挥作用。最近,S100A8/A9复合物作为一个重要的警报蛋白,参与调节各种炎症性心血管疾病,特别是非缺血性心肌病(NICM)的发病机制,引起了人们的广泛关注。此外,据报道,S100A8/A9与心肌缺血-再灌注损伤的病理生理过程有关,也被认为是急性心肌梗死引起心力衰竭的预测因子和潜在介质。最近的研究试图全面详细地概述S100A8/A9蛋白在NICM中的作用,涵盖肥厚性心肌重构、脓毒性和扩张性心肌病、心肌炎、化疗性心脏毒性、衰老性心功能障碍和心脏异体移植排斥反应等主题。最后,我们旨在评估S100A8/A9作为有前景的生物标志物和治疗策略在NICM预测、预防和治疗中的应用。
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引用次数: 0
Commentary on ‘Lentivirus-mediated gene therapy for Fabry disease: 5-year end-of-study results from the Canadian FACTS trial’ 《慢病毒介导的法布里病基因治疗:加拿大FACTS试验5年研究结束结果》评论
Pub Date : 2025-02-27 DOI: 10.1002/ctd2.70038
Alessandro Rossi, Nicola Brunetti-Pierri
<p>Fabry disease is an X-linked lysosomal storage disorder of glycosphingolipid catabolism caused by pathogenic variants in the <i>GLA</i> gene encoding α-galactosidase A (α-Gal A). It is a progressive disorder with involvement of the renal, cardiac, neurologic and cerebrovascular systems, leading to reduced life expectancy.<span><sup>1</sup></span> α-Gal A deficiency causes lysosomal accumulation of glycosphingolipids such as globotriaosylceramide (Gb3) and globotriaosylsphingosine (lyso-Gb3) in the vascular endothelium, epithelial cells, podocytes, cardiomyocytes, mesangial cells and renal tubular cells. Currently available treatments for Fabry disease [enzyme replacement therapy (ERT) and chaperone therapy] are effective in mitigating the decline of renal and cardiac functions and increasing survival.<span><sup>2, 3</sup></span> However, ERT is hampered by the enzyme's short half-life, incomplete tissue penetration, infusion-related reactions, and the development of antidrug antibodies. On the other hand, oral chaperone therapy has broad tissue distribution and penetration, but its efficacy is restricted to patients carrying specific <i>GLA</i> variants.<span><sup>4</sup></span> Therefore, novel and more effective treatments are needed. The Fabry Disease Clinical Research and Therapeutics (FACTs) study aimed to overcome these limitations using ex vivo lentiviral vector (LV)-mediated gene transfer into autologous haematopoietic stem/progenitor cells (HSPCs) harvested from peripheral blood after mobilisation. Following non-myeloablative conditioning, genetically corrected HSPCs were infused into each patient to engraft and proliferate with all progeny cells carrying the therapeutic gene. After LV-mediated HSPC gene therapy, tissue-resident immune cells and circulating blood cells express the therapeutic gene if they are the progeny of the genetically corrected cells. The lysosomal enzyme secreted by the cells derived from genetically corrected HPSCs is then internalised by nearby and distant uncorrected cells and directed into their lysosomes for cross-correction. LV-mediated HSPC gene therapy has been used in several clinical trials including various inherited immunodeficiencies, haematological disorders, X-linked adrenoleukodystrophy, as well as other lysosomal storage disorders, such as metachromatic leukodystrophy and mucopolysaccharidosis type I.<span><sup>5</sup></span></p><p>The FACTs trial involved five adult male individuals with classic Fabry disease. The interim results of the trial showed sustained reductions in Gb3 and lyso-Gb3.<span><sup>6, 7</sup></span> In their follow-up article, Khan and colleagues presented longer 5-year data of the FACTs study.<span><sup>8</sup></span> Importantly, no additional adverse events attributable to the gene therapy were observed and long-term α-Gal A expression along with sustained reductions in lyso-Gb3 and Gb3 continue to be observed in all study participants. Plasma and white blood cell α-Gal A
法布里病是一种由编码α-半乳糖苷酶A (α-Gal A)的GLA基因致病性变异引起的糖鞘脂分解代谢的x连锁溶酶体贮积性疾病,是一种累及肾脏、心脏、神经和脑血管系统的进行性疾病,可导致预期寿命降低。1 α-半乳糖A缺乏导致鞘糖脂在血管内皮、上皮细胞、足细胞、心肌细胞、系膜细胞和肾小管细胞中溶酶体积聚,如globotriaosylneuroide (Gb3)和globotriaosylsphingosine (lyso-Gb3)。目前可用的法布里病治疗方法[酶替代疗法(ERT)和伴侣疗法]在缓解肾功能和心功能下降和提高生存率方面是有效的。2,3然而,ERT受到酶半衰期短、组织渗透不完全、输注相关反应和抗药物抗体的发展的阻碍。另一方面,口服伴侣治疗具有广泛的组织分布和渗透,但其疗效仅限于携带特定GLA变异的患者因此,需要新的和更有效的治疗方法。法布里病临床研究和治疗(FACTs)研究旨在克服这些局限性,使用体外慢病毒载体(LV)介导的基因转移到动员后从外周血中收集的自体造血干细胞/祖细胞(HSPCs)中。在非清髓性条件下,将基因校正的HSPCs输注到每个患者体内,与所有携带治疗基因的后代细胞一起移植和增殖。经过lv介导的HSPC基因治疗后,组织驻留免疫细胞和循环血细胞如果是基因校正细胞的后代,则表达治疗基因。由遗传校正的人造血干细胞衍生的细胞分泌的溶酶体酶随后被附近和远处未校正的细胞内化,并被引导到它们的溶酶体中进行交叉校正。lv介导的HSPC基因治疗已用于多项临床试验,包括各种遗传性免疫缺陷、血液病、x连锁肾上腺白质营养不良以及其他溶酶体储存疾病,如异色性白质营养不良和粘多糖病i型。FACTs试验涉及5名患有经典法布里病的成年男性。试验的中期结果显示Gb3和lyso-Gb3.6持续下降,在他们的后续文章中,Khan和同事提供了FACTs研究的5年数据重要的是,没有观察到可归因于基因治疗的其他不良事件,并且在所有研究参与者中继续观察到α-Gal A的长期表达以及lyso-Gb3和Gb3的持续降低。除1例患者在基因治疗后5年内α-Gal A活性在正常范围外,其余患者血浆和白细胞α-Gal A活性均低于参考范围。尽管生物标志物数据令人鼓舞,但通过估算肾小球滤过率(eGFR)评估的预防肾功能丧失的功效显示出喜忧参半的结果。虽然在基线时轻度肾病患者中观察到eGFR稳定,但在3例患者中仅检测到eGFR轻度下降,其中包括1例血浆α-Gal a在正常范围内的患者,并且在1例基线时患有fabry相关性肾病的患者中观察到eGFR斜率急剧下降的肾脏疾病进展。总的来说,这些数据和缺乏对照组阻止了关于体外基因治疗在阻止肾脏疾病进展方面的有效性的结论,尽管酶的持续表达和生物标志物的改善。生物标志物可以作为临床结果的可靠替代品,并且已被建议使用它们来提高临床试验的效率,特别是在需要长期评估的溶酶体储存疾病中然而,法布里病的lyso-Gb3与临床终点之间的相关性并不令人满意10,法布里病接受ERT治疗的患者仍然会丧失肾功能并出现心脏并发症,尽管比未治疗的患者更少、更晚。法布里病与组织重塑和不可逆器官损伤有关。FACTs试验中的患者均为成人。为了防止肾功能下降,基因治疗可能需要在基质改变、纤维化和细胞死亡发生之前及时干预。体外lv介导的基因治疗也可能无法实现肾细胞(如足细胞、系膜细胞或小管细胞)的完全交叉校正,这些细胞有助于肾脏疾病的进展。FACTs试验采用低剂量美伐兰的低强度非清髓调节方案,而不是常用的布苏凡。 这种方法用于提高Fabry患者移植手术的安全性和降低移植手术的复杂性,这些患者有相当多的合并症,可能会增加移植相关发病率的风险。然而,使用清髓调节方案进行基因治疗以获得更高或超生理α-Gal a活性可能提供更大的疾病纠正。在没有积极选择的情况下,允许治疗基因高表达的因素,如强启动子或高载体拷贝数,可能导致更好的疾病结果14,但也可能增加遗传毒性的风险。最近,67例小儿脑肾上腺白质营养不良患者中有7例在lv介导的体外基因治疗几个月后发展为血液学癌症(1例急性髓性白血病和6例骨髓增生异常综合征)。所有7例患者均在MECOM基因(6例)或PRDM16基因(1例)内或附近的肿瘤细胞中发现克隆性LV插入患癌风险可能与强病毒启动子有关FACTs研究使用具有自灭活LTR设计的重组LV,在普遍存在的人类延伸因子1α (EF1α)启动子的控制下,传递人类密码子优化的α-Gal a转基因。因此,lv治疗的法布里病患者和脑肾上腺白质营养不良患者的癌症风险可能不同。在FACTs试验的所有5例患者中,无克隆优势的持续多克隆造血是令人放心的。然而,这些令人不安的事件提高了LV体外基因治疗法布里病的门槛,至少在癌症发展的确切机制被揭开之前,以及基因治疗优于现有治疗的临床益处的证据被提供之前。4AR和NB-P撰写了手稿。作者没有利益冲突。不适用。
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引用次数: 0
From multi-omics to cancer digital twins: Novel paradigm in cancer research and treatment response 从多组学到癌症数字双胞胎:癌症研究和治疗反应的新范式
Pub Date : 2025-02-16 DOI: 10.1002/ctd2.70035
Sara Sadat Aghamiri, Rada Amin
<p>Integrating multi-omics in cancer research has expanded our understanding of the intricate molecular mechanisms underlying malignancies. Traditional single-omics approaches, while informative, only capture one molecular layer at a time.<span><sup>1</sup></span> However, cancer is a multifaceted disease driven by genetic, epigenetic, metabolic and signalling interactions. In addition, the crosstalk between tumour cells and their environment, whether occurring during malignancies or modulated through therapy, is inherently multiscale. For instance, the crosstalk spans molecular-, cellular- and systems-level processes, operating across temporal and spatial scales. Such complexity renders the tumour ecosystem an archetype of a hierarchical system, requiring integrative approaches to fully comprehend and address.<span><sup>2</sup></span> Multi-omics bridges this gap by integrating diverse data types from the same patients to provide a multidimensional view of the tumour ecosystem. Each of these modalities contributes unique insights into the core tumour; for example, genomics focuses on the mutational landscape, transcriptomics highlights aberrant gene expression, proteomics elucidates protein interactions, epigenomics reveals regulatory mechanisms, metabolomics uncovers metabolic reprogramming and spatial omics map biomolecules directly onto the physical position of tumour niches.<span><sup>3</sup></span> Together, these multiple modalities resume tumours' molecular and functional dynamics, improving applications such as precision medicine, biomarker discovery, drug target identification and patient stratification (Figure 1).</p><p>Integrating multi-omics requires sophisticated computational methods capable of handling high-dimensional datasets.<span><sup>4</sup></span> To tackle these challenges, artificial intelligence (AI), machine learning (ML) and deep learning (DL) have emerged as powerful tools. The AI- and ML/DL-based models facilitate the fusion of multiple modalities into a unified framework, addressing the challenges of disparate data types that vary in size, scales, formats, distributions and noise levels. Its ability to process and harmonize multi-omics data at scale allows this approach to analyse complex datasets, identify hidden patterns and uncover correlations across multi-omics layers often imperceptible to human analysis.<span><sup>5</sup></span> For example, Zhang et al. developed a comprehensive multi-omics platform called COMOS, designed as a non-invasive approach to enhance the diagnosis and prognosis of diffuse large B-cell lymphoma. The authors utilized cell-free DNA (cfDNA) extracted from a single tube of patient blood to analyse several features simultaneously. Using ML algorithms, authors integrated diverse parameters, including nucleosome positioning, CpG island methylation, DNase hypersensitive sites, methylated regions, and copy number alterations, providing a comprehensive view of the cfDNA landscape. COMOS demonst
在癌症研究中整合多组学扩展了我们对恶性肿瘤复杂的分子机制的理解。传统的单组学方法虽然信息量大,但一次只能捕获一个分子层然而,癌症是一种多方面的疾病,由遗传、表观遗传、代谢和信号相互作用驱动。此外,肿瘤细胞与其环境之间的串扰,无论是发生在恶性肿瘤期间还是通过治疗调节,本质上是多尺度的。例如,串扰跨越了分子、细胞和系统层面的过程,跨越了时间和空间尺度。这种复杂性使得肿瘤生态系统成为一个等级系统的原型,需要综合的方法来充分理解和解决多组学通过整合来自同一患者的不同数据类型来提供肿瘤生态系统的多维视图,从而弥补了这一差距。每一种模式都对核心肿瘤有独特的见解;例如,基因组学专注于突变景观,转录组学强调异常基因表达,蛋白质组学阐明蛋白质相互作用,表观基因组学揭示调节机制,代谢组学揭示代谢重编程,空间组学将生物分子直接定位到肿瘤生态位的物理位置总之,这些多种模式恢复肿瘤的分子和功能动态,改善应用,如精准医学,生物标志物发现,药物靶点识别和患者分层(图1)。整合多组学需要能够处理高维数据集的复杂计算方法为了应对这些挑战,人工智能(AI)、机器学习(ML)和深度学习(DL)已经成为强大的工具。基于AI和ML/ dl的模型有助于将多种模式融合到一个统一的框架中,解决不同数据类型在大小、规模、格式、分布和噪声水平上的挑战。它处理和协调大规模多组学数据的能力使这种方法能够分析复杂的数据集,识别隐藏的模式,并揭示人类分析难以察觉的多组学层之间的相关性例如,Zhang等人开发了一种名为COMOS的综合多组学平台,旨在作为一种非侵入性方法来提高弥漫性大b细胞淋巴瘤的诊断和预后。作者利用从单管患者血液中提取的无细胞DNA (cfDNA)同时分析了几个特征。使用ML算法,作者整合了各种参数,包括核小体定位,CpG岛甲基化,dna酶超敏感位点,甲基化区域和拷贝数改变,提供了cfDNA景观的全面视图。与标准预测方法相比,COMOS在早期诊断和预测化疗反应方面表现出强大的准确性像COMOS这样的非侵入性方法的主要优点是,它们只需要一管外周血和一个人工智能平台,与活检标本相比,它们对患者来说更舒适。此外,这些方法在常规临床实施中具有很大的潜力,为持续监测和早期检测提供了一种侵入性较小、成本较低的替代方法。这种模式的转变扩大了我们对癌症的理解,提高了诊断、预测预后和评估治疗反应的能力。然而,肿瘤生态系统的动态特性,以克隆进化、微环境相互作用、位点间异质性和治疗诱导的适应为特征,将需要超越静态分子快照的方法。当患者接受常规检查时,不断收集影像学、活检、组学分析和临床结果的数据,强调了实时跟踪系统评估肿瘤进展并相应地调整治疗剂量的必要性。静态模型依赖于固定的假设或初始数据集,可能无法捕捉肿瘤行为的动态变化或随时间调整治疗策略。相反,基于积累的数据,自适应模型可以整合新的见解,以提供更准确的预测和个性化的建议因此,肿瘤生态系统的数字表示,可以与患者一起不断进化,有可能提供肿瘤生物景观的非侵入性和实时虚拟模型。数字孪生(DTs)最初是在工程中开发的,是模拟现实世界过程的物理系统的虚拟复制品。最近,DTs在医疗保健领域获得了极大的关注,因为它们有可能通过创建个人健康的动态和个性化模型来优化患者护理。
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引用次数: 0
Post-COVID-19 pulmonary fibrosis: Mechanisms, biomarkers, and therapeutic perspectives covid -19后肺纤维化:机制、生物标志物和治疗前景
Pub Date : 2025-02-04 DOI: 10.1002/ctd2.70034
Urvinder Kaur Sardarni, Siddappa N. Byrareddy

Post-COVID-19 pulmonary fibrosis (post-CPF) has emerged as a serious complication with profound implications for long-term respiratory health. This short review explores the multifactorial mechanisms underlying post-CPF, emphasising the role of oxidative stress, epithelial-to-mesenchymal transition (EMT), and dysregulated immune responses. Key signalling pathways, such as TGF-β, WNT, and Cadherin, are pivotal in fibrosis progression, offering potential therapeutic targets. Biomarkers, such as MUC4, KRT5, and ATP12A show promise for early detection and therapeutic targeting, as they share molecular features with idiopathic pulmonary fibrosis (IPF) and fibrotic interstitial lung diseases (f-ILDs), suggesting opportunities to repurpose antifibrotic therapies. Despite these advancements, significant gaps remain in understanding the cellular and molecular mechanisms underlying fibrosis progression, hindering effective management of post-CPF. Addressing these challenges through a targeted approach is critical to improving outcomes for survivors of severe COVID-19.

covid -19后肺纤维化(post-CPF)已成为一种严重并发症,对长期呼吸系统健康产生深远影响。这篇简短的综述探讨了cpf后的多因素机制,强调氧化应激、上皮-间质转化(EMT)和失调的免疫反应的作用。关键信号通路,如TGF-β、WNT和Cadherin,在纤维化进展中起关键作用,提供了潜在的治疗靶点。生物标志物,如MUC4、KRT5和ATP12A显示出早期检测和治疗靶向的希望,因为它们与特发性肺纤维化(IPF)和纤维化间质性肺疾病(f-ILDs)具有相同的分子特征,这表明有机会重新利用抗纤维化治疗。尽管取得了这些进展,但在了解纤维化进展的细胞和分子机制方面仍存在重大差距,阻碍了cpf后的有效管理。通过有针对性的方法应对这些挑战,对于改善COVID-19严重幸存者的预后至关重要。
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引用次数: 0
Utilising single-cell sequencing in clinical nutraceutical research: Recent progress and perspectives 单细胞测序在临床营养研究中的应用:最新进展和展望
Pub Date : 2025-01-23 DOI: 10.1002/ctd2.70032
Xiaoqiang Wang, Yin S. Chan, David Sadava, Shiuan Chen

Background

Single-cell sequencing technologies have revolutionised pharmaceutical research by providing in-depth insights into human biology at the single-cell level. These tools enable researchers to identify rare cell types and analyse cellular diversity within tissues, facilitating the discovery of new therapeutic targets and biomarkers. However, their application in nutraceutical research is still in its early stages.

Main Body

Unlike pharmaceuticals, which have well-defined chemical structures and mechanisms, nutraceuticals are food-based materials intended for specific medical purposes and often contain complex and diverse food chemicals. These molecules can work synergistically, producing multi-targeted effects in various tissues. Traditional bulk profiling methods for tissues and tumours do not adequately capture cellular heterogeneity or specific cellular responses to treatments. Therefore, advanced single-cell sequencing is crucial for dissecting tissues into distinct cell types, helping to clarify the underlying mechanisms at the cellular level. Many derivatives of functional foods have been marketed or assessed, demonstrating health benefits. However, mechanistic insights are lacking, with most current data derived from observational studies or traditional in vitro and in vivo models. Human clinical trials are needed to validate these nutraceutical effects and determine effective and safe dosages. Edible mushrooms have gained attention as nutraceuticals due to their medicinal properties. They have been observed to enhance immunity, reduce inflammation, and combat cancer. These effects have been attributed to their unique bioactive components and historical uses in traditional medicine. Epidemiological studies show that higher consumption of edible mushrooms is linked to a reduced risk of certain cancers.

Conclusion

In this review, we share important lessons learned in the design and execution of clinical trials focusing on white button mushrooms as anti-cancer nutraceuticals. We demonstrate the use of single-cell RNA sequencing (scRNA-seq) in nutraceutical research to capture the nuanced biological responses and health effects of dietary foods and their constituents.

单细胞测序技术通过在单细胞水平上深入了解人类生物学,彻底改变了制药研究。这些工具使研究人员能够识别罕见的细胞类型和分析组织内的细胞多样性,促进新的治疗靶点和生物标志物的发现。然而,它们在营养保健研究中的应用仍处于初级阶段。与具有明确化学结构和机制的药品不同,营养保健品是用于特定医疗目的的食品材料,通常含有复杂多样的食品化学物质。这些分子可以协同工作,在各种组织中产生多靶点效应。传统的组织和肿瘤的整体分析方法不能充分捕捉细胞异质性或对治疗的特定细胞反应。因此,先进的单细胞测序对于将组织分解为不同的细胞类型至关重要,有助于阐明细胞水平上的潜在机制。许多功能性食品的衍生物已经上市或经过评估,证明对健康有益。然而,由于目前大多数数据来自观察性研究或传统的体外和体内模型,因此缺乏机制见解。需要进行人体临床试验来验证这些营养作用,并确定有效和安全的剂量。食用菌因其药用特性而成为人们关注的营养保健品。人们已经观察到它们可以增强免疫力、减少炎症和对抗癌症。这些作用归因于其独特的生物活性成分和传统医学中的历史用途。流行病学研究表明,食用更多的蘑菇可以降低患某些癌症的风险。在这篇综述中,我们分享了在设计和实施以白钮扣菇为抗癌营养保健品的临床试验中获得的重要经验教训。我们展示了在营养研究中使用单细胞RNA测序(scRNA-seq)来捕捉膳食食品及其成分的细微生物反应和健康影响。
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引用次数: 0
Intrarenal pressure monitoring via flexible and navigable suction ureteral access sheath in retrograde intrarenal surgery: A preclinical animal study and a pilot clinical study 在逆行肾内手术中,通过柔性和可导航的抽吸输尿管通路鞘监测肾内压力:临床前动物研究和临床试验研究
Pub Date : 2025-01-21 DOI: 10.1002/ctd2.70031
Wei Zhu, Steffi Kar Kei Yuen, Jianwei Cao, Chu Ann Chai, Shusheng Liu, Jingzeng Du, Wen Zhong, Zhijian Zhao, Yongda Liu, Guohua Zeng

Background

Elevated intrarenal pressure (IRP) during retrograde intrarenal surgery (RIRS) can lead to deleterious complications. Emerging non-invasive, real-time IRP monitoring tools are proving crucial for enhancing procedural safety. This study evaluates a newly developed flexible and navigable suction ureteral access sheath (FANS) with IRP monitoring capabilities through animal study and a clinical trial, assessing its accuracy and operational benefits.

Methods

A preclinical animal study and a prospective clinical trial involving 100 patients were conducted. The animal study confirmed the accuracy of IRP-monitoring FANS, whilst the clinical trial compared its performance to conventional FANS in RIRS. The evaluated outcomes included the accuracy of IRP measurements, the irrigation flow rate, the duration of the operation, and the stone-free rate (SFR). Statistical comparisons were performed using appropriate tests with a significant threshold of p < .05. Registration for this study is recorded under the identifier NCT06729801 at ClinicalTrials.gov.

Results

In the animal study, IRP-monitoring FANS demonstrated high accuracy in real-time IRP measurement, comparable to percutaneous nephrostomy-based monitoring. In the clinical study, IRP-monitoring FANS enabled increased irrigation flow whilst maintaining safe IRP levels within 30 mmHg. Operative time was significantly shortened in IRP-monitoring FANS group (50.9 vs. 67.6 min, p < .01), with similar SFRs between groups. No notable discrepancies in the rates of complications were observed.

Conclusions

The IRP-monitoring FANS improves stone retrieval efficiency and shortens operative time whilst ensuring safety through real-time IRP monitoring. This novel device marks a major improvement in both the safety and effectiveness of RIRS for managing large renal stones.

背景:逆行肾内手术(RIRS)中肾内压(IRP)升高可导致有害并发症。新兴的非侵入性、实时IRP监测工具被证明对提高程序安全性至关重要。本研究通过动物实验和临床试验对一种新开发的具有IRP监测能力的柔性可导航输尿管吸入鞘(FANS)进行评估,评估其准确性和操作效益。方法采用临床前动物实验和100例前瞻性临床试验。动物研究证实了irp监测FANS的准确性,而临床试验将其性能与RIRS中的常规FANS进行了比较。评估结果包括IRP测量的准确性、灌溉流量、操作持续时间和无结石率(SFR)。采用适当的检验进行统计学比较,显著阈值为p <;. 05。本研究的注册在ClinicalTrials.gov上以标识符NCT06729801进行记录。结果在动物研究中,IRP监测FANS在实时IRP测量中显示出很高的准确性,与经皮肾造口监测相当。在临床研究中,IRP监测FANS可以增加灌溉流量,同时将IRP水平保持在30 mmHg以内。irp监测组的手术时间明显缩短(50.9 vs 67.6 min, p <;.01),各组间SFRs相似。并发症发生率无明显差异。结论IRP监测fan通过实时监测IRP,提高了取石效率,缩短了手术时间,保证了手术安全性。这种新型装置标志着RIRS治疗大肾结石的安全性和有效性的重大改进。
{"title":"Intrarenal pressure monitoring via flexible and navigable suction ureteral access sheath in retrograde intrarenal surgery: A preclinical animal study and a pilot clinical study","authors":"Wei Zhu,&nbsp;Steffi Kar Kei Yuen,&nbsp;Jianwei Cao,&nbsp;Chu Ann Chai,&nbsp;Shusheng Liu,&nbsp;Jingzeng Du,&nbsp;Wen Zhong,&nbsp;Zhijian Zhao,&nbsp;Yongda Liu,&nbsp;Guohua Zeng","doi":"10.1002/ctd2.70031","DOIUrl":"https://doi.org/10.1002/ctd2.70031","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Elevated intrarenal pressure (IRP) during retrograde intrarenal surgery (RIRS) can lead to deleterious complications. Emerging non-invasive, real-time IRP monitoring tools are proving crucial for enhancing procedural safety. This study evaluates a newly developed flexible and navigable suction ureteral access sheath (FANS) with IRP monitoring capabilities through animal study and a clinical trial, assessing its accuracy and operational benefits.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>A preclinical animal study and a prospective clinical trial involving 100 patients were conducted. The animal study confirmed the accuracy of IRP-monitoring FANS, whilst the clinical trial compared its performance to conventional FANS in RIRS. The evaluated outcomes included the accuracy of IRP measurements, the irrigation flow rate, the duration of the operation, and the stone-free rate (SFR). Statistical comparisons were performed using appropriate tests with a significant threshold of <i>p</i> &lt; .05. Registration for this study is recorded under the identifier NCT06729801 at ClinicalTrials.gov.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>In the animal study, IRP-monitoring FANS demonstrated high accuracy in real-time IRP measurement, comparable to percutaneous nephrostomy-based monitoring. In the clinical study, IRP-monitoring FANS enabled increased irrigation flow whilst maintaining safe IRP levels within 30 mmHg. Operative time was significantly shortened in IRP-monitoring FANS group (50.9 vs. 67.6 min, <i>p</i> &lt; .01), with similar SFRs between groups. No notable discrepancies in the rates of complications were observed.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>The IRP-monitoring FANS improves stone retrieval efficiency and shortens operative time whilst ensuring safety through real-time IRP monitoring. This novel device marks a major improvement in both the safety and effectiveness of RIRS for managing large renal stones.</p>\u0000 </section>\u0000 </div>","PeriodicalId":72605,"journal":{"name":"Clinical and translational discovery","volume":"5 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/ctd2.70031","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143117827","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Utilisation of a national database to characterise renal function in patients with COVID19 infection 利用国家数据库表征covid - 19感染患者的肾功能
Pub Date : 2025-01-10 DOI: 10.1002/ctd2.70027
Nicholas R. Nelson, Nicholas Farina, Denise H. Rhoney, the N3C consortium

Rationale

The incidence of renal function alterations among patients with COVID19 is unknown.

Objective

To determine the incidence of acute kidney injury (AKI) or augmented renal clearance (ARC) in patients hospitalised with COVID19 and identify risk factors for patients who may exhibit each renal alteration.

Methods

Retrospective, observational cohort analysis of hospitalise, adult patients within the National COVID Cohort Collaborative (N3C) database with laboratory confirmed COVID19 and available data to calculate creatinine clearance using the Cockcroft–Gault equation from 1 January 2020 through 9 April 2022.

Measurements

Incidence of AKI or ARC and patient demographics.

Main results

15 608 patients were included for renal function characterisation where 20.9% experienced AKI and 34.8% exhibited ARC. ARC lasted longer than AKI; however, AKI was associated with increased hospital length of stay and mortality. 11 274 patients were included in logistic regression analysis. Height and White race were the only variables associated with decreased risk of AKI while male sex and diabetes were associated with increased risk. Male sex, Black race and hypertension were associated with decreased risk of ARC. Age was associated with decreased risk of both AKI and ARC while weight and Hispanic ethnicity were associated with increased risk in both renal alterations.

Conclusions

A significant proportion of patients exhibit renal alterations during their hospitalisation for COVID19. These results provide initial evidence of identifying patients at risk of AKI or ARC, but more research is needed, especially with respect to use of biomarkers for renal alteration risk stratification.

新冠肺炎患者肾功能改变的发生率尚不清楚。目的了解covid - 19住院患者急性肾损伤(AKI)或增强肾清除率(ARC)的发生率,并确定可能出现每种肾脏改变的患者的危险因素。方法回顾性、观察性队列分析国家COVID队列协作(N3C)数据库中具有实验室确诊COVID和现有数据的住院成年患者,使用Cockcroft-Gault方程计算2020年1月1日至2022年4月9日的肌酐清除率。AKI或ARC的发生率和患者人口统计学。主要结果15 608例患者纳入肾功能特征,其中20.9%为AKI, 34.8%为ARC。ARC持续时间长于AKI;然而,AKI与住院时间和死亡率增加有关。11 274例患者纳入logistic回归分析。身高和白种人是唯一与AKI风险降低相关的变量,而男性和糖尿病与风险增加相关。男性、黑人和高血压与ARC风险降低有关。年龄与AKI和ARC的风险降低有关,而体重和西班牙裔与两种肾脏改变的风险增加有关。结论有相当比例的患者在covid - 19住院期间出现肾脏改变。这些结果为识别有AKI或ARC风险的患者提供了初步证据,但需要更多的研究,特别是关于使用生物标志物进行肾脏改变风险分层。
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引用次数: 0
Thyroglobulin mRNA ectopic expression was an excellent marker to detect lymph node metastasis for patients with papillary thyroid cancer 甲状腺球蛋白mRNA异位表达是检测甲状腺乳头状癌患者淋巴结转移的良好标志
Pub Date : 2025-01-08 DOI: 10.1002/ctd2.70029
Wen-Hua Du, Ying-Chao Chen, Ning Jin, Yuan-yuan Zhang, Bao-Lan Ji, Jing Wu, Feng-Yao Wu, Shuang-Xia Zhao, Bing Han, Huai-Dong Song, Mei Dong

Objective

To investigate whether the mRNA expression of thyroglobulin (TG) and TSH receptor (TSHR) in lymph node could be used to diagnose lymph node metastasis in patients with papillary thyroid cancer (PTC).

Subjects and methods

Around 156 paraffin samples of lymph nodes from 89 patients with PTC after surgery were collected, and the expressions of TG and TSHR mRNA were detected by nested qPCR.

Results

Compared with the results of confirmed histopathology, 86 out of 87 tissues of lymph nodes metastasis ectopically expressed TG mRNA, while 66 out of 69 tissues of non-metastasis lymph nodes did not express the TG mRNA. The specificity and sensitivity of TG mRNA measurement for detecting the lymph node metastasis were 95.65% and 98.85%, as effective as the first postoperative histopathology. However, the specificity and sensitivity of TSHR mRNA measurement were 92.75% and 85.06%, respectively. The accuracy of TG, TSHR mRNA measurement and the first postoperative histopathology were 97.44%, 88.46% and 95.51%, with the positive predictive rate (PPR) 96.63%, 93.67%, and 98.78%, respectively, negative predictive rate (NPR) 98.51%, 83.12% and 91.89%, respectively, as well as Youden's index 0.95, 0.78 and 0.92.

Conclusions

TG mRNA ectopic expression in the lymph node might be an excellent marker to diagnose the lymph node metastasis for patients with PTCs.

目的探讨甲状腺球蛋白(TG)和TSH受体(TSHR) mRNA在甲状腺乳头状癌(PTC)患者淋巴结转移中的表达情况。对象与方法收集89例PTC术后淋巴结标本156份左右,采用巢式qPCR检测TG和TSHR mRNA的表达。结果87例淋巴结转移组织中有86例表达TG mRNA, 69例非转移淋巴结组织中有66例不表达TG mRNA。TG mRNA检测淋巴结转移的特异性和敏感性分别为95.65%和98.85%,与术后第一次组织病理检查效果相当。而TSHR mRNA检测的特异性和敏感性分别为92.75%和85.06%。TG、TSHR mRNA测定及术后首次组织病理学准确度分别为97.44%、88.46%和95.51%,阳性预测值分别为96.63%、93.67%和98.78%,阴性预测值分别为98.51%、83.12%和91.89%,约登指数分别为0.95、0.78和0.92。结论淋巴结TG mRNA异位表达可能是诊断ptc患者淋巴结转移的良好标志。
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引用次数: 0
期刊
Clinical and translational discovery
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