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A lyophilised formulation of chimpanzee adenovirus vector for long-term stability outside the deep-freeze cold chain. 一种黑猩猩腺病毒载体的冻干制剂,用于在深度冷冻冷链外的长期稳定。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-18 DOI: 10.1038/s43856-025-00740-x
Frédéric Mathot, Edwige Lefebvre, Bernard G Francq, Delphine Guillaume, Erwan Bourlès

Background: The adenovirus-vaccine platform has come to prominence with the COVID-19 vaccination campaigns. The objective of this study was to validate a formulation that was suitable for lyophilisation and long-term storage at 5 (2-8) °C.

Methods: Vaccine stability was assessed up to five years at 5 °C using a lyophilised formulation of the chimpanzee-adenovirus vector ChAd155 encoding a respiratory syncytial virus (RSV) antigen. Vaccine potency was assessed by functional infectivity assay. Other assessments of vaccine stability included those for capsid integrity, particle content, and DNA release. Vaccine efficacy and safety were assessed after two years in a murine model of RSV challenge and a rabbit toxicology model, respectively.

Results: Here, we show that the potency loss from lyophilisation was 0.12 log10. The potency loss over five years at 5 °C was estimated at 0.21 log10 (95%CI 0.10-0.30). This coincides with a 25% increase in the ratio of non-infectious particles/infectious particles. After two years of storage at 5 °C, (i) the loss of infectivity was 0.17 log10; (ii) the vaccine remained immunogenic and effective at clearing RSV from the lungs in a mouse-challenge model; and (iii) the vaccine was not associated with any adverse safety signal in a rabbit toxicology model.

Conclusions: The 5-year stability of the lyophilised adenovirus-vector vaccine is within our acceptable limit ( < 0.3 log10 decrease). Its formulation process is amenable to manufacturing scale-up and should help in providing adenovirus-based vaccines where the cold chain is problematic, such as in low-income countries, and in pre-epidemic stockpiling.

背景:随着COVID-19疫苗接种运动的开展,腺病毒疫苗平台已成为人们关注的焦点。本研究的目的是验证一种适合在5(2-8)°C下冷冻干燥和长期储存的配方。方法:使用编码呼吸道合胞病毒(RSV)抗原的黑猩猩腺病毒载体ChAd155冻干制剂,在5°C条件下评估疫苗稳定性长达5年。用功能感染性试验评价疫苗效力。疫苗稳定性的其他评估包括衣壳完整性、颗粒含量和DNA释放。两年后,分别在RSV攻毒的小鼠模型和兔毒理学模型中评估疫苗的有效性和安全性。结果:冻干后的效价损失为0.12 log10。在5°C条件下,5年内的效力损失估计为0.21 log10 (95%CI 0.10-0.30)。与此同时,非传染性颗粒/传染性颗粒的比例增加了25%。在5°C下储存2年后,(i)感染性损失为0.17 log10;(ii)在小鼠攻毒模型中,疫苗在清除肺部呼吸道合胞病毒方面保持免疫原性并有效;(三)在兔毒理学模型中,该疫苗与任何不良安全信号无关。结论:冻干腺病毒载体疫苗的5年稳定性在我们可接受的限度内(降低10倍)。它的配制过程适于扩大生产规模,并应有助于在冷链存在问题的地方(如低收入国家)以及流行病前的储存中提供基于腺病毒的疫苗。
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引用次数: 0
FORCE platform overcomes barriers of oligonucleotide delivery to muscle and corrects myotonic dystrophy features in preclinical models. FORCE平台克服了寡核苷酸传递到肌肉的障碍,纠正了临床前模型中的肌强直性营养不良特征。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-18 DOI: 10.1038/s43856-025-00733-w
Timothy Weeden, Tyler Picariello, Brendan Quinn, Sean Spring, Pei-Yi Shen, Qifeng Qiu, Benjamin F Vieira, Lydia Schlaefke, Ryan J Russo, Ya-An Chang, Jin Cui, Monica Yao, Aiyun Wen, Nelson Hsia, Tama Evron, Katy Ovington, Pei-Ni Tsai, Nicholas Yoder, Bo Lan, Reshmii Venkatesan, John Hall, Cody A Desjardins, Mo Qatanani, Scott Hilderbrand, John Najim, Zhenzhi Tang, Matthew K Tanner, Romesh Subramanian, Charles A Thornton, Oxana Ibraghimov-Beskrovnaya, Stefano Zanotti

Background: We developed the FORCETM platform to overcome limitations of oligonucleotide delivery to muscle and enable their applicability to neuromuscular disorders. The platform consists of an antigen-binding fragment, highly specific for the human transferrin receptor 1 (TfR1), conjugated to an oligonucleotide via a cleavable valine-citrulline linker. Myotonic dystrophy type 1 (DM1) is a neuromuscular disorder caused by expanded CUG triplets in the DMPK RNA, which sequester splicing proteins in the nucleus, lead to spliceopathy, and drive disease progression.

Methods: Multiple surrogate conjugates were generated to characterize the FORCE platform. DYNE-101 is the conjugate designed to target DMPK and correct spliceopathy for the treatment of DM1. HSALR and TfR1hu/mu;DMSXLTg/Tg mice were used as models of myotonic dystrophy, the latter expresses human TfR1 and a human DMPK RNA with >1,000 CUG repeats. Cynomolgus monkeys were used to determine translatability of DYNE-101 pharmacology to higher species.

Results: In HSALR mice, a surrogate FORCE conjugate achieves durable correction of spliceopathy and improves myotonia to a greater extent than unconjugated ASO. In patient-derived myoblasts, DYNE-101 reduces DMPK RNA and nuclear foci, consequently improving spliceopathy. In TfR1hu/mu;DMSXLTg/Tg mice, DYNE-101 reduces mutant DMPK RNA in muscle, thereby correcting splicing. Reduction of DMPK foci in cardiomyocyte nuclei accompanies these effects. Low monthly dosing of DYNE-101 in TfR1hu/mu;DMSXLWT/Tg mice or cynomolgus monkeys leads to a profound reduction of DMPK expression in muscle.

Conclusions: These data validate FORCE as a drug delivery platform and support the notion that DM1 may be treatable with low and infrequent dosing of DYNE-101.

背景:我们开发了FORCETM平台,以克服寡核苷酸递送肌肉的局限性,使其适用于神经肌肉疾病。该平台由抗原结合片段组成,对人类转铁蛋白受体1 (TfR1)具有高度特异性,通过可切割的缬氨酸-瓜氨酸连接物偶联到寡核苷酸上。1型肌强直性营养不良(DM1)是一种由DMPK RNA中CUG三联扩增引起的神经肌肉疾病,其在细胞核中隔离剪接蛋白,导致剪接病并驱动疾病进展。方法:生成多个代物偶联体对FORCE平台进行表征。DYNE-101是设计用于靶向DMPK和纠正DM1治疗的剪接病的缀合物。HSALR和TfR1hu/mu;DMSXLTg/Tg小鼠作为肌强直性营养不良小鼠模型,后者表达人TfR1和人DMPK RNA,有100 000个CUG重复。以食蟹猴为实验对象,研究DYNE-101的药理学可译性。结果:在HSALR小鼠中,与未结合的ASO相比,替代FORCE共轭物实现了对剪接病的持久矫正,并在更大程度上改善了肌强直。在患者源性成肌细胞中,DYNE-101可减少DMPK RNA和核病灶,从而改善剪接病变。在TfR1hu/mu;DMSXLTg/Tg小鼠中,DYNE-101减少肌肉中突变的DMPK RNA,从而纠正剪接。心肌细胞核DMPK病灶的减少伴随着这些影响。在TfR1hu/mu;DMSXLWT/Tg小鼠或食食猴中,每月低剂量的DYNE-101导致肌肉中DMPK表达的显著降低。结论:这些数据验证了FORCE作为一个药物传递平台,并支持了低剂量和不频繁剂量的DYNE-101可以治疗DM1的观点。
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引用次数: 0
Beta-variant recombinant SARS CoV-2 vaccine induces durable cross-reactive antibodies against Omicron BA variants. β变重组SARS CoV-2疫苗诱导抗Omicron BA变异体的持久交叉反应抗体。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-18 DOI: 10.1038/s43856-024-00675-9
Odile Launay, Rachna Gupta, Tifany Machabert, Eleine Konate, Alexandra Rousseau, Claire Vigne, Francois Beckers, Louis Devlin, Elisabeth Botelho-Nevers, Marine Cachanado, Christian Chidiac, Dominique Deplanque, Bertrand Dussol, Inès Ben Ghezala, Marie Lachatre, Karine Lacombe, Fabrice Laine, Liem Binh Luong Nguyen, Patricia Pavese, Catherine Schmidt-Mutter, Marie-Pierre Tavolacci, Roman M Chicz, Bogdana Coudsy, Saranya Sridhar, Amel Touati, Eric Tartour, Tabassome Simon

Background: We previously reported the safety and immunogenicity data from a randomized trial comparing the booster responses of vaccinees who received monovalent (MV) recombinant protein Beta-variant (MVB.1.351) and MV ancestral protein (MVD614) vaccines with AS03 adjuvant (Sanofi/GSK) to booster response of vaccinees who received mRNA MV ancestral strain BNT162b2 vaccine (Pfizer-BioNTech).

Methods: First booster of the vaccines was administered in adult participants previously primed with 2 doses of MV ancestral strain BNT162b2. A subset of these participants with available blood samples collected at Day 0 (D0), at 28 days (D28), and 3 months (M3) post-booster were contacted for additional testing (195/208 participants). The persistence of cross-neutralizing antibodies, including against Omicron BA.1 and BA.4/5, up to 3 months after boosting was evaluated using a validated pseudovirus neutralization assay.

Results: Across the whole population, MVB.1.351 vaccine induces highest NAbs titers against Omicron BA.1 and BA.4/5 variants at D28 and M3 post-booster. In participants with SARS-CoV-2 infection between D28 and M3, both MVB.1.351 and BNT162b2 vaccine groups show an increase in GMTs against Omicron BA.1 and Omicron BA.4/5 following infection. Among uninfected participants, the ratio of M3 to D28 GMTs was higher for the MVB.1.351 group than the BNT162b2 group against Omicron BA.1 (0.64 [0.53;0.77] versus 0.43 [0.35;0.53]), Omicron BA.4/5 (0.61 [0.50; 0.75] versus 0.44 [0.34; 0.56]), and D614 (0.68 [0.58,0.81] versus 0.46 [0.39,0.55]).

Conclusions: The MVB.1.351 vaccine induces higher and durable cross-neutralizing antibodies against Omicron subvariants up to 3 months after boosting compared to an MV ancestral and mRNA BNT162b2 booster vaccine.

背景:我们之前报道了一项随机试验的安全性和免疫原性数据,该试验比较了接种AS03佐剂(赛诺菲/葛兰素史克)的单价(MV)重组蛋白β -变体(MVB.1.351)和MV祖先蛋白(MVD614)疫苗的疫苗接种者与接种mRNA MV祖先株BNT162b2疫苗(辉瑞- biontech)的疫苗接种者的增强反应。方法:对先前接种过2剂MV祖先株BNT162b2的成年参与者进行第一次疫苗加强接种。在增强后第0天(D0),第28天(D28)和3个月(M3)收集可用血液样本的这些参与者的一个子集被联系以进行额外的测试(195/208参与者)。交叉中和抗体,包括抗Omicron BA.1和BA.4/5的抗体,在增强后3个月的持久性使用验证的假病毒中和试验进行评估。结果:在整个人群中,MVB.1.351疫苗在D28和M3后增强时对Omicron BA.1和BA.4/5变体诱导的nab滴度最高。在D28和M3之间感染SARS-CoV-2的参与者中,MVB.1.351和BNT162b2疫苗组均显示感染后对Omicron BA.1和Omicron BA.4/5的GMTs增加。在未感染的参与者中,MVB.1.351组的M3 / D28 GMTs比率高于BNT162b2组对Omicron BA.1(0.64[0.53;0.77]对0.43 [0.35;0.53]),Omicron BA.4/5 (0.61 [0.50;0.75 vs . 0.44 [0.34;0.56]), D614 0.46(0.68[0.58, 0.81]和[0.39,0.55])。结论:与MV祖先和mRNA BNT162b2增强疫苗相比,MVB.1.351疫苗在增强后3个月内可诱导更高且持久的抗Omicron亚变体的交叉中和抗体。
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引用次数: 0
Association of plasma biomarkers of Alzheimer's pathology and neurodegeneration with gait performance in older adults. 老年痴呆症病理和神经退行性变的血浆生物标志物与步态表现的关系。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-16 DOI: 10.1038/s43856-024-00713-6
Farwa Ali, Jeremy A Syrjanen, Dan J Figdore, Walter K Kremers, Michelle M Mielke, Clifford R Jack, David S Knopman, Prashanthi Vemuri, Jonathan Graff-Radford, B Gwen Windham, Leland R Barnard, Ronald C Petersen, Alicia Algeciras-Schimnich

Background: Declining gait performance is seen in aging individuals, due to neural and systemic factors. Plasma biomarkers provide an accessible way to assess evolving brain changes; non-specific neurodegeneration (NfL, GFAP) or evolving Alzheimer's disease (Aβ 42/40 ratio, P-Tau181).

Methods: In a population-based cohort of older adults, we evaluate the hypothesis that plasma biomarkers of neurodegeneration and Alzheimer's Disease pathology are associated with worse gait performance. A sample of 2641 Mayo Clinic Study of Aging participants with measurements of plasma biomarkers and gait parameters was analyzed in this cross-sectional study. Linear regression models using plasma biomarkers as predictors of gait parameters and adjusted for age, sex, BMI, Charlson Comorbidity Index, and cognitive diagnosis were evaluated.

Results: In this study multiple statistically significant relationships are observed for GFAP, NfL, and P-Tau181 with gait parameters. Each standard deviation increase in GFAP, NfL, and P-Tau181 is associated with a reduction in velocity of 2.100 (95% CI: -3.004, -1.196; p = 5.4 × 10-6), 4.400 (-5.292, -3.507; p = 9.5 × 10-22), and 2.617 (-3.414, -1.819; p = 1.5 × 10-10) cm/sec, respectively. Overall, NfL has the strongest associations with poor gait performance. Models with age interactions show that the strength of associations between the plasma biomarkers and the gait parameters became stronger with increasing age. There are no specific gait parameters that associate with individual plasma biomarkers.

Conclusion: Plasma biomarkers of neurodegeneration and Alzheimer's Disease pathology are not only markers of cognitive decline but also indicate motor decline in the aging population.

背景:由于神经和全身因素,在老年人中可以看到步态性能下降。血浆生物标志物为评估不断变化的大脑变化提供了一种可行的方法;非特异性神经变性(NfL, GFAP)或发展中的阿尔茨海默病(Aβ 42/40比值,P-Tau181)。方法:在以人群为基础的老年人队列中,我们评估了神经变性和阿尔茨海默病病理的血浆生物标志物与较差的步态表现相关的假设。本横断面研究分析了2641名梅奥诊所老年研究参与者的血浆生物标志物和步态参数测量。使用血浆生物标志物作为步态参数预测因子的线性回归模型,并根据年龄、性别、BMI、Charlson合并症指数和认知诊断进行调整。结果:在本研究中,GFAP、NfL和P-Tau181与步态参数之间存在多个统计学意义上的关系。GFAP、NfL和P-Tau181每增加一个标准差,流速降低2.100 (95% CI: -3.004, -1.196;P = 5.4 × 10-6), 4.400 (-5.292, -3.507;P = 9.5 × 10-22)、2.617 (-3.414,-1.819;P = 1.5 × 10-10) cm/sec。总的来说,NfL与步态表现差有最强的联系。具有年龄相互作用的模型显示,血浆生物标志物与步态参数之间的关联强度随着年龄的增长而增强。没有特定的步态参数与个体血浆生物标志物相关。结论:老年人群神经退行性变和阿尔茨海默病病理的血浆生物标志物不仅是认知能力下降的标志,而且是运动能力下降的标志。
{"title":"Association of plasma biomarkers of Alzheimer's pathology and neurodegeneration with gait performance in older adults.","authors":"Farwa Ali, Jeremy A Syrjanen, Dan J Figdore, Walter K Kremers, Michelle M Mielke, Clifford R Jack, David S Knopman, Prashanthi Vemuri, Jonathan Graff-Radford, B Gwen Windham, Leland R Barnard, Ronald C Petersen, Alicia Algeciras-Schimnich","doi":"10.1038/s43856-024-00713-6","DOIUrl":"10.1038/s43856-024-00713-6","url":null,"abstract":"<p><strong>Background: </strong>Declining gait performance is seen in aging individuals, due to neural and systemic factors. Plasma biomarkers provide an accessible way to assess evolving brain changes; non-specific neurodegeneration (NfL, GFAP) or evolving Alzheimer's disease (Aβ 42/40 ratio, P-Tau181).</p><p><strong>Methods: </strong>In a population-based cohort of older adults, we evaluate the hypothesis that plasma biomarkers of neurodegeneration and Alzheimer's Disease pathology are associated with worse gait performance. A sample of 2641 Mayo Clinic Study of Aging participants with measurements of plasma biomarkers and gait parameters was analyzed in this cross-sectional study. Linear regression models using plasma biomarkers as predictors of gait parameters and adjusted for age, sex, BMI, Charlson Comorbidity Index, and cognitive diagnosis were evaluated.</p><p><strong>Results: </strong>In this study multiple statistically significant relationships are observed for GFAP, NfL, and P-Tau181 with gait parameters. Each standard deviation increase in GFAP, NfL, and P-Tau181 is associated with a reduction in velocity of 2.100 (95% CI: -3.004, -1.196; p = 5.4 × 10<sup>-6</sup>), 4.400 (-5.292, -3.507; p = 9.5 × 10<sup>-22</sup>), and 2.617 (-3.414, -1.819; p = 1.5 × 10<sup>-10</sup>) cm/sec, respectively. Overall, NfL has the strongest associations with poor gait performance. Models with age interactions show that the strength of associations between the plasma biomarkers and the gait parameters became stronger with increasing age. There are no specific gait parameters that associate with individual plasma biomarkers.</p><p><strong>Conclusion: </strong>Plasma biomarkers of neurodegeneration and Alzheimer's Disease pathology are not only markers of cognitive decline but also indicate motor decline in the aging population.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":"5 1","pages":"19"},"PeriodicalIF":5.4,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11739691/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Harnessing deep learning to detect bronchiolitis obliterans syndrome from chest CT. 利用深度学习检测胸部CT上的闭塞性细支气管炎综合征。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-16 DOI: 10.1038/s43856-025-00732-x
Mateusz Koziński, Doruk Oner, Jakub Gwizdała, Catherine Beigelman-Aubry, Pascal Fua, Angela Koutsokera, Alessio Casutt, Argyro Vraka, Michele De Palma, John-David Aubert, Horst Bischof, Christophe von Garnier, Sahand Jamal Rahi, Martin Urschler, Nahal Mansouri

Background: Bronchiolitis Obliterans Syndrome (BOS), a fibrotic airway disease that may develop after lung transplantation, conventionally relies on pulmonary function tests (PFTs) for diagnosis due to limitations of CT imaging. Deep neural networks (DNNs) have not previously been used for BOS detection. This study aims to train a DNN to detect BOS in CT scans using an approach tailored for low-data scenarios.

Methods: We trained a DNN to detect BOS in CT scans using a co-training method designed to enhance performance in low-data environments. Our method employs an auxiliary task that makes the DNN more sensitive to disease manifestations and less sensitive to the patient's anatomical features. The DNN was tasked with predicting the sequence of two CT scans taken from the same BOS patient at least six months apart. We evaluated this approach on CT scans from 75 post-transplant patients, including 26 with BOS, and used a ROC-AUC metric to assess performance.

Results: We show that our DNN method achieves a ROC-AUC of 0.90 (95% CI: 0.840-0.953) in distinguishing BOS from non-BOS in CT scans. Performance correlates with BOS progression, with ROC-AUC values of 0.88 for stage I, 0.91 for stage II, and 0.94 for stage III BOS. Notably, the DNN shows comparable performance on standard- and high-resolution CT scans. It also demonstrates the ability to predict BOS in at-risk patients (FEV1 between 80% and 90% of best FEV1) with a ROC-AUC of 0.87 (95% CI: 0.735-0.974). Using visual interpretation techniques for DNNs, we reveal sensitivity to hyperlucent/hypoattenuated areas indicative of air-trapping or bronchiectasis.

Conclusions: Our approach shows potential for improving BOS diagnosis by enabling early detection and management. The ability to detect BOS from standard-resolution scans at any stage of respiration makes this method more accessible than previous approaches. Additionally, our findings highlight that techniques to limit overfitting are crucial for unlocking the potential of DNNs in low-data settings, which could assist clinicians in BOS studies with limited patient data.

背景:闭塞性毛细支气管炎综合征(BOS)是一种可能在肺移植后发生的纤维化气道疾病,由于CT成像的限制,传统上依赖于肺功能检查(PFTs)进行诊断。深度神经网络(dnn)以前没有用于BOS检测。本研究旨在训练DNN使用针对低数据场景定制的方法来检测CT扫描中的BOS。方法:我们使用一种旨在提高低数据环境下性能的协同训练方法训练DNN来检测CT扫描中的BOS。我们的方法采用了一种辅助任务,使DNN对疾病表现更加敏感,而对患者的解剖特征不那么敏感。DNN的任务是预测同一名BOS患者相隔至少6个月的两次CT扫描的顺序。我们对75例移植后患者的CT扫描进行了评估,其中包括26例BOS患者,并使用ROC-AUC指标评估其表现。结果:我们发现我们的DNN方法在CT扫描中区分BOS和非BOS的ROC-AUC为0.90 (95% CI: 0.840-0.953)。表现与BOS进展相关,第一阶段的ROC-AUC值为0.88,第二阶段为0.91,第三阶段为0.94。值得注意的是,DNN在标准和高分辨率CT扫描中表现出相当的性能。它还证明了预测高危患者(FEV1在最佳FEV1的80% - 90%之间)BOS的能力,ROC-AUC为0.87 (95% CI: 0.735-0.974)。使用dnn的视觉解释技术,我们揭示了对指示空气捕获或支气管扩张的高光/低衰减区域的敏感性。结论:我们的方法显示了通过早期发现和管理来改善BOS诊断的潜力。在呼吸的任何阶段从标准分辨率扫描中检测BOS的能力使该方法比以前的方法更容易使用。此外,我们的研究结果强调,限制过拟合的技术对于在低数据环境中释放dnn的潜力至关重要,这可以帮助临床医生在患者数据有限的情况下进行BOS研究。
{"title":"Harnessing deep learning to detect bronchiolitis obliterans syndrome from chest CT.","authors":"Mateusz Koziński, Doruk Oner, Jakub Gwizdała, Catherine Beigelman-Aubry, Pascal Fua, Angela Koutsokera, Alessio Casutt, Argyro Vraka, Michele De Palma, John-David Aubert, Horst Bischof, Christophe von Garnier, Sahand Jamal Rahi, Martin Urschler, Nahal Mansouri","doi":"10.1038/s43856-025-00732-x","DOIUrl":"10.1038/s43856-025-00732-x","url":null,"abstract":"<p><strong>Background: </strong>Bronchiolitis Obliterans Syndrome (BOS), a fibrotic airway disease that may develop after lung transplantation, conventionally relies on pulmonary function tests (PFTs) for diagnosis due to limitations of CT imaging. Deep neural networks (DNNs) have not previously been used for BOS detection. This study aims to train a DNN to detect BOS in CT scans using an approach tailored for low-data scenarios.</p><p><strong>Methods: </strong>We trained a DNN to detect BOS in CT scans using a co-training method designed to enhance performance in low-data environments. Our method employs an auxiliary task that makes the DNN more sensitive to disease manifestations and less sensitive to the patient's anatomical features. The DNN was tasked with predicting the sequence of two CT scans taken from the same BOS patient at least six months apart. We evaluated this approach on CT scans from 75 post-transplant patients, including 26 with BOS, and used a ROC-AUC metric to assess performance.</p><p><strong>Results: </strong>We show that our DNN method achieves a ROC-AUC of 0.90 (95% CI: 0.840-0.953) in distinguishing BOS from non-BOS in CT scans. Performance correlates with BOS progression, with ROC-AUC values of 0.88 for stage I, 0.91 for stage II, and 0.94 for stage III BOS. Notably, the DNN shows comparable performance on standard- and high-resolution CT scans. It also demonstrates the ability to predict BOS in at-risk patients (FEV1 between 80% and 90% of best FEV1) with a ROC-AUC of 0.87 (95% CI: 0.735-0.974). Using visual interpretation techniques for DNNs, we reveal sensitivity to hyperlucent/hypoattenuated areas indicative of air-trapping or bronchiectasis.</p><p><strong>Conclusions: </strong>Our approach shows potential for improving BOS diagnosis by enabling early detection and management. The ability to detect BOS from standard-resolution scans at any stage of respiration makes this method more accessible than previous approaches. Additionally, our findings highlight that techniques to limit overfitting are crucial for unlocking the potential of DNNs in low-data settings, which could assist clinicians in BOS studies with limited patient data.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":"5 1","pages":"18"},"PeriodicalIF":5.4,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11739420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Uptake and safety of Sotrovimab for prevention of severe COVID-19 in a cohort and self-controlled case series study. 在队列和自我对照病例系列研究中,Sotrovimab预防重症COVID-19的摄取和安全性
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-16 DOI: 10.1038/s43856-024-00720-7
Martina Patone, Andrew Jhl Snelling, Holly Tibble, Carol Coupland, Aziz Sheikh, Julia Hippisley-Cox

Background: Sotrovimab is a neutralising monoclonal antibody (nMAB) currently available to treat extremely clinically vulnerable COVID-19 patients in England. Trials have shown it to have mild to moderate side effects, however, evidence regarding its safety in real-world settings remains insufficient.

Methods: Descriptive and multivariable logistic regression analyses were conducted to evaluate uptake, and a self-controlled case series analysis performed to measure the risk of hospital admission (hospitalisation) associated with 49 pre-specified suspected adverse outcomes in the period 2-28 days post-Sotrovimab treatment among eligible patients treated between December 11, 2021 and May 24, 2022.

Results: Here we show that among treated and untreated eligible individuals, the mean ages (54.6 years, SD: 16.1 vs 54.1, SD: 18.3) and sex distribution (women: 60.9% vs 58.1%; men: 38.9% vs 41.1%) are similar. There are marked variations in uptake between ethnic groups, which is higher amongst individuals categorised ethnically as Indian (15.0%; 95%CI 13.8, 16.3), Other Asian (13.7%; 95%CI 11.9, 15.8), white (13.4%; 95%CI 13.3, 13.6), and Bangladeshi (11.4%; 95%CI 8.8, 14.6); and lower amongst Black Caribbean individuals (6.4%; 95%CI 5.4, 7.5) and Black Africans (4.7%; 95%CI 4.1, 5.4). We find no increased risk of any of the suspected adverse outcomes in the period 2-28 days post-treatment.

Conclusions: We find no safety signals of concern for possible adverse outcomes in the period 2-28 days post treatment with Sotrovimab. However, there is evidence of unequal uptake of Sotrovimab treatment across ethnic groups.

背景:Sotrovimab是一种中和性单克隆抗体(nMAB),目前可用于治疗英国临床极度易感的COVID-19患者。试验表明它有轻微到中度的副作用,然而,关于它在现实环境中的安全性的证据仍然不足。方法:进行描述性和多变量logistic回归分析来评估摄取情况,并进行自我控制病例系列分析,以测量符合条件的患者在2021年12月11日至2022年5月24日接受索trovimab治疗后2-28天内与49个预先指定的疑似不良结局相关的住院(住院)风险。结果:我们发现,在治疗和未治疗的符合条件的个体中,平均年龄(54.6岁,SD: 16.1 vs 54.1, SD: 18.3)和性别分布(女性:60.9% vs 58.1%;男性:38.9%对41.1%)。不同种族群体之间的摄取有显著差异,在种族分类为印度人的个人中,这一比例更高(15.0%;95%CI 13.8, 16.3),其他亚洲(13.7%;95%CI 11.9, 15.8),白色(13.4%;95%可信区间13.3,13.6),孟加拉国人(11.4%;95%ci 8.8, 14.6);加勒比黑人的比例更低(6.4%);95%可信区间为5.4,7.5)和非洲黑人(4.7%;95%ci 4.1, 5.4)。我们发现在治疗后2-28天期间,任何可疑不良结果的风险均未增加。结论:我们没有发现在Sotrovimab治疗后2-28天内可能出现不良后果的安全信号。然而,有证据表明,不同种族群体对索洛维单抗治疗的接受程度是不平等的。
{"title":"Uptake and safety of Sotrovimab for prevention of severe COVID-19 in a cohort and self-controlled case series study.","authors":"Martina Patone, Andrew Jhl Snelling, Holly Tibble, Carol Coupland, Aziz Sheikh, Julia Hippisley-Cox","doi":"10.1038/s43856-024-00720-7","DOIUrl":"10.1038/s43856-024-00720-7","url":null,"abstract":"<p><strong>Background: </strong>Sotrovimab is a neutralising monoclonal antibody (nMAB) currently available to treat extremely clinically vulnerable COVID-19 patients in England. Trials have shown it to have mild to moderate side effects, however, evidence regarding its safety in real-world settings remains insufficient.</p><p><strong>Methods: </strong>Descriptive and multivariable logistic regression analyses were conducted to evaluate uptake, and a self-controlled case series analysis performed to measure the risk of hospital admission (hospitalisation) associated with 49 pre-specified suspected adverse outcomes in the period 2-28 days post-Sotrovimab treatment among eligible patients treated between December 11, 2021 and May 24, 2022.</p><p><strong>Results: </strong>Here we show that among treated and untreated eligible individuals, the mean ages (54.6 years, SD: 16.1 vs 54.1, SD: 18.3) and sex distribution (women: 60.9% vs 58.1%; men: 38.9% vs 41.1%) are similar. There are marked variations in uptake between ethnic groups, which is higher amongst individuals categorised ethnically as Indian (15.0%; 95%CI 13.8, 16.3), Other Asian (13.7%; 95%CI 11.9, 15.8), white (13.4%; 95%CI 13.3, 13.6), and Bangladeshi (11.4%; 95%CI 8.8, 14.6); and lower amongst Black Caribbean individuals (6.4%; 95%CI 5.4, 7.5) and Black Africans (4.7%; 95%CI 4.1, 5.4). We find no increased risk of any of the suspected adverse outcomes in the period 2-28 days post-treatment.</p><p><strong>Conclusions: </strong>We find no safety signals of concern for possible adverse outcomes in the period 2-28 days post treatment with Sotrovimab. However, there is evidence of unequal uptake of Sotrovimab treatment across ethnic groups.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":"5 1","pages":"20"},"PeriodicalIF":5.4,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11739568/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revealing excitation-inhibition imbalance in Alzheimer's disease using multiscale neural model inversion of resting-state functional MRI. 利用静息状态功能MRI的多尺度神经模型反演揭示阿尔茨海默病的兴奋-抑制失衡。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-15 DOI: 10.1038/s43856-025-00736-7
Guoshi Li, Li-Ming Hsu, Ye Wu, Andrea C Bozoki, Yen-Yu Ian Shih, Pew-Thian Yap

Background: Alzheimer's disease (AD) is a serious neurodegenerative disorder without a clear understanding of pathophysiology. Recent experimental data have suggested neuronal excitation-inhibition (E-I) imbalance as an essential element of AD pathology, but E-I imbalance has not been systematically mapped out for either local or large-scale neuronal circuits in AD, precluding precise targeting of E-I imbalance in AD treatment.

Method: In this work, we apply a Multiscale Neural Model Inversion (MNMI) framework to the resting-state functional MRI data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) to identify brain regions with disrupted E-I balance in a large network during AD progression.

Results: We observe that both intra-regional and inter-regional E-I balance is progressively disrupted from cognitively normal individuals, to mild cognitive impairment (MCI) and to AD. Also, we find that local inhibitory connections are more significantly impaired than excitatory ones and the strengths of most connections are reduced in MCI and AD, leading to gradual decoupling of neural populations. Moreover, we reveal a core AD network comprised mainly of limbic and cingulate regions. These brain regions exhibit consistent E-I alterations across MCI and AD, and thus may represent important AD biomarkers and therapeutic targets. Lastly, the E-I balance of multiple brain regions in the core AD network is found to be significantly correlated with the cognitive test score.

Conclusions: Our study constitutes an important attempt to delineate E-I imbalance in large-scale neuronal circuits during AD progression, which may facilitate the development of new treatment paradigms to restore physiological E-I balance in AD.

背景:阿尔茨海默病(Alzheimer's disease, AD)是一种严重的神经退行性疾病,目前对其病理生理尚不清楚。最近的实验数据表明,神经元兴奋抑制(E-I)失衡是阿尔茨海默病病理的一个基本因素,但E-I失衡尚未系统地映射到阿尔茨海默病的局部或大规模神经回路中,这排除了在阿尔茨海默病治疗中精确靶向E-I失衡的可能性。方法:在这项工作中,我们将多尺度神经模型反演(MNMI)框架应用于来自阿尔茨海默病神经成像倡议(ADNI)的静息状态功能MRI数据,以识别AD进展过程中大网络中E-I平衡被破坏的大脑区域。结果:我们观察到,从认知正常个体到轻度认知障碍(MCI)和AD,区域内和区域间的E-I平衡都逐渐被破坏。此外,我们发现局部抑制性连接比兴奋性连接受损更明显,并且大多数连接的强度在MCI和AD中降低,导致神经群逐渐解耦。此外,我们揭示了一个主要由边缘和扣带区域组成的核心AD网络。这些脑区在轻度认知障碍和阿尔茨海默病中表现出一致的E-I改变,因此可能是重要的阿尔茨海默病生物标志物和治疗靶点。最后,我们发现AD核心网络中多个大脑区域的E-I平衡与认知测试成绩显著相关。结论:本研究为揭示阿尔茨海默病进展过程中大规模神经回路E-I失衡提供了重要的尝试,这可能有助于开发新的治疗模式来恢复阿尔茨海默病的生理E-I平衡。
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引用次数: 0
Deep learning empowered sensor fusion boosts infant movement classification. 深度学习的传感器融合增强了婴儿运动分类。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-14 DOI: 10.1038/s43856-024-00701-w
Tomas Kulvicius, Dajie Zhang, Luise Poustka, Sven Bölte, Lennart Jahn, Sarah Flügge, Marc Kraft, Markus Zweckstetter, Karin Nielsen-Saines, Florentin Wörgötter, Peter B Marschik

Background: To assess the integrity of the developing nervous system, the Prechtl general movement assessment (GMA) is recognized for its clinical value in diagnosing neurological impairments in early infancy. GMA has been increasingly augmented through machine learning approaches intending to scale-up its application, circumvent costs in the training of human assessors and further standardize classification of spontaneous motor patterns. Available deep learning tools, all of which are based on single sensor modalities, are however still considerably inferior to that of well-trained human assessors. These approaches are hardly comparable as all models are designed, trained and evaluated on proprietary/silo-data sets.

Methods: With this study we propose a sensor fusion approach for assessing fidgety movements (FMs). FMs were recorded from 51 typically developing participants. We compared three different sensor modalities (pressure, inertial, and visual sensors). Various combinations and two sensor fusion approaches (late and early fusion) for infant movement classification were tested to evaluate whether a multi-sensor system outperforms single modality assessments. Convolutional neural network (CNN) architectures were used to classify movement patterns.

Results: The performance of the three-sensor fusion (classification accuracy of 94.5%) is significantly higher than that of any single modality evaluated.

Conclusions: We show that the sensor fusion approach is a promising avenue for automated classification of infant motor patterns. The development of a robust sensor fusion system may significantly enhance AI-based early recognition of neurofunctions, ultimately facilitating automated early detection of neurodevelopmental conditions.

背景:为了评估发育中的神经系统的完整性,Prechtl一般运动评估(GMA)被认为在诊断早期婴儿神经损伤方面具有临床价值。通过机器学习方法,GMA已经得到了越来越多的增强,这些方法旨在扩大其应用范围,规避人类评估员培训的成本,并进一步标准化自发运动模式的分类。然而,现有的深度学习工具都是基于单一传感器模式的,与训练有素的人类评估人员相比,它们仍然相当逊色。这些方法几乎没有可比性,因为所有模型都是在专有/孤岛数据集上设计、训练和评估的。方法:在这项研究中,我们提出了一种传感器融合方法来评估烦躁运动(FMs)。记录了51名典型发展参与者的FMs。我们比较了三种不同的传感器模式(压力、惯性和视觉传感器)。对婴儿运动分类的各种组合和两种传感器融合方法(后期和早期融合)进行了测试,以评估多传感器系统是否优于单模态评估。使用卷积神经网络(CNN)架构对运动模式进行分类。结果:三传感器融合的分类准确率为94.5%,明显高于任何一种评估的单一模式。结论:我们表明,传感器融合方法是一个有前途的途径,自动分类婴儿运动模式。鲁棒传感器融合系统的发展可能会显著增强基于人工智能的神经功能早期识别,最终促进神经发育状况的自动化早期检测。
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引用次数: 0
Release of apoptosis inhibitor of macrophage (AIM) from pentameric IgM in serum predicts prognosis after hemodialysis initiation. 血清五聚体IgM中巨噬细胞凋亡抑制剂(AIM)的释放预测血液透析开始后的预后。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-11 DOI: 10.1038/s43856-025-00735-8
Keisuke Yasuda, Akemi Nishijima, Tomoko Inoue, Toshio Takagi, Kazunari Tanabe, Jun Minakuchi, Satoko Arai, Toru Miyazaki

Background: The optimal timing for initiating dialysis and prognostic markers in chronic kidney disease (CKD) patients are under debate, with mortality and cardiovascular risks varying among patients. This study investigates whether the apoptosis inhibitor of macrophage (AIM), which is mostly bound to pentameric IgM, could serve as an effective indicator.

Methods: We prospectively followed 423 patients at dialysis initiation and 563 at various CKD stages. AIM dissociation from IgM and other serum components were measured in their serum samples. In vitro treatment of IgM-AIM complexes with their serum was conducted to assess AIM release from IgM. Survival analysis determined the associations of each variable with mortality and cardiovascular risk, and a cutoff value was calculated and validated using cross-validation.

Results: AIM dissociation from IgM increases with CKD progression and correlates with the serum uremic state, as shown by enhanced AIM release from IgM in vitro with sera from patients starting dialysis, but not those at earlier CKD stages. Patients at dialysis initiation with high proportion of serum IgM-free AIM (fAIM%) show elevated uremic toxins and other toxic metabolites, higher mortality, and increased cardiovascular risk compared to those with low fAIM%. This prognostic association is not seen with other CKD biomarkers, such as eGFR, creatinine, or inositol-phosphate. We determined the fAIM% cutoff of 46.27%, which predicts mortality two years post-dialysis initiation.

Conclusions: These findings suggest that the serum fAIM% could function as a prognostic marker at dialysis initiation and may have potential as a criterion for determining dialysis timing.

背景:慢性肾脏疾病(CKD)患者开始透析的最佳时机和预后指标存在争议,患者的死亡率和心血管风险各不相同。巨噬细胞凋亡抑制剂(apoptosis inhibitor of macrophage, AIM)主要与五聚体IgM结合,本研究探讨其能否作为一种有效的指标。方法:我们对423例透析起始患者和563例不同CKD分期患者进行前瞻性随访。测定其血清样品中AIM与IgM及其他血清成分的分离程度。用IgM-AIM复合物的血清进行体外处理,以评估IgM对AIM的释放。生存分析确定了每个变量与死亡率和心血管风险的关联,并计算了截断值,并使用交叉验证进行了验证。结果:AIM与IgM的分离随着CKD的进展而增加,并与血清尿毒症状态相关,正如开始透析的患者血清中IgM的AIM释放增强所显示的那样,但在早期CKD阶段则没有。在透析开始时,血清中不含igm的AIM (fAIM%)比例高的患者与低fAIM%的患者相比,尿毒症毒素和其他有毒代谢物升高,死亡率更高,心血管风险增加。这种预后相关性在其他CKD生物标志物如eGFR、肌酐或肌醇-磷酸中未见。我们确定fAIM的临界值为46.27%,预测透析开始两年后的死亡率。结论:这些发现表明,血清饥饿率可以作为透析开始时的预后指标,并可能作为确定透析时机的标准。
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引用次数: 0
Longitudinal study of care needs and behavioural changes in people living with dementia using in-home assessment data. 利用家庭评估数据对痴呆症患者的护理需求和行为改变进行纵向研究。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-01-10 DOI: 10.1038/s43856-024-00724-3
Chloe Walsh, Alexander Capstick, Nan Fletcher-Lloyd, Jessica True, Ramin Nilforooshan, Payam Barnaghi

Background: People living with dementia often experience changes in independence and daily living, affecting their well-being and quality of life. Behavioural changes correlate with cognitive decline, functional impairment, caregiver distress, and care availability.

Methods: We use data from a 3-year prospective observational study of 141 people with dementia at home, using the Bristol Activities of Daily Living Scale, Neuropsychiatric Inventory and cognitive assessments, alongside self-reported and healthcare-related data.

Results: Here we show, psychiatric behavioural symptoms and difficulties in activities of daily living, fluctuate alongside cognitive decline. 677 activities of daily living and 632 psychiatric behaviour questionnaires are available at intervals of 3 months. Clustering shows three severity-based groups. Mild cognitive decline associates with higher caregiver anxiety, while the most severe group interacts more with community services, but less with hospitals.

Conclusions: We characterise behavioural symptoms and difficulties in activities of daily living in dementia, offering clinically relevant insights not commonly considered in current practice. We provide a holistic overview of participants' health during their progression of dementia.

背景:痴呆症患者经常经历独立性和日常生活的变化,影响他们的幸福感和生活质量。行为改变与认知能力下降、功能障碍、照顾者痛苦和护理的可获得性有关。方法:我们使用的数据来自一项为期3年的前瞻性观察研究,共有141名痴呆症患者在家,使用布里斯托尔日常生活活动量表、神经精神量表和认知评估,以及自我报告和医疗保健相关数据。结果:在这里,我们表明,精神行为症状和日常生活活动困难,随认知能力下降而波动。每隔3个月提供677项日常生活活动和632份精神病学行为问卷。聚类显示了三个基于严重性的组。轻度认知能力下降与较高的照顾者焦虑有关,而最严重的群体与社区服务的互动更多,与医院的互动较少。结论:我们描述了痴呆症患者的行为症状和日常生活活动困难,提供了当前实践中通常未考虑的临床相关见解。我们提供了参与者的健康在他们的痴呆症进展的整体概述。
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引用次数: 0
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