首页 > 最新文献

Communications medicine最新文献

英文 中文
Risk of congenital malformation in newborns from mothers with kidney diseases in a nationwide cohort study. 在一项全国性队列研究中,患有肾脏疾病的母亲所生新生儿先天性畸形的风险
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-09 DOI: 10.1038/s43856-026-01397-w
Seung Hyun Han, Zio Kim, Subin Jeong, Seungyeon Kim, Jeongin Song, Jeesun Lee, Sehoon Park, Min Hyuk Lim, Joong Shin Park, Hyung-Jin Yoon, Seung Mi Lee, Hajeong Lee

Background: Maternal chronic kidney disease (CKD) is associated with an increased risk of adverse pregnancy outcomes. However, the overall risk of congenital malformations (CMs) in offspring of mothers with kidney disease, including CKD and end-stage kidney disease (ESKD), remains unclear.

Methods: In this nationwide cohort study, we analyzed National Health Insurance Service (NHIS) data from 2,680,092 women who gave birth between 2008 and 2017. Major CMs were identified using the International Classification of Diseases-10 (ICD-10) codes during the first 12 months after birth. A multivariable generalized estimating equation model was used to compare the risk of CMs between women with CKD or ESKD, including those on dialysis and post-kidney transplantation (KT), and healthy controls.

Results: Major CMs prevalence is 4.79% in offspring of healthy mothers, 5.29% in CKD mothers, and 9.65% in ESKD mothers, with congenital heart defects being the most common anomaly across all groups. After adjustment, mothers with kidney diseases show a higher risk of major CMs than healthy controls (adjusted odds ratio [aOR], 1.07; 95% confidence interval [CI], 1.03-1.11 in CKD; aOR, 1.71; 95% CI, 1.16-2.52 in ESKD, respectively). Among ESKD patients, KT recipients show an increased risk (aOR, 1.65; 95% CI, 1.06-2.59), but dialysis patients do not reach statistical significance (aOR, 2.02; 95% CI, 0.92-4.41).

Conclusions: Our findings suggest that neonates born to mothers with kidney diseases have an increased risk of CMs compared to those born to healthy mothers.

背景:母体慢性肾脏疾病(CKD)与不良妊娠结局风险增加相关。然而,患有肾脏疾病(包括CKD和终末期肾脏疾病(ESKD))的母亲的后代先天性畸形(CMs)的总体风险仍不清楚。方法:在这项全国性队列研究中,我们分析了2008年至2017年期间分娩的268092名妇女的国民健康保险服务(NHIS)数据。在出生后的前12个月内,使用国际疾病分类-10 (ICD-10)代码确定主要CMs。采用多变量广义估计方程模型比较CKD或ESKD女性(包括透析和肾移植后(KT)患者)与健康对照者发生CMs的风险。结果:健康母亲的后代主要CMs患病率为4.79%,CKD母亲为5.29%,ESKD母亲为9.65%,先天性心脏缺陷是所有人群中最常见的异常。调整后,患有肾脏疾病的母亲发生重大CMs的风险高于健康对照组(调整后的优势比[aOR]为1.07;CKD的校正后优势比[aOR]为1.03-1.11;ESKD的校正后优势比[aOR]为1.71;95% CI为1.16-2.52)。在ESKD患者中,接受KT治疗的患者风险增加(aOR, 1.65; 95% CI, 1.06-2.59),但透析患者没有达到统计学意义(aOR, 2.02; 95% CI, 0.92-4.41)。结论:我们的研究结果表明,与健康母亲所生的新生儿相比,患有肾脏疾病的母亲所生的新生儿患CMs的风险增加。
{"title":"Risk of congenital malformation in newborns from mothers with kidney diseases in a nationwide cohort study.","authors":"Seung Hyun Han, Zio Kim, Subin Jeong, Seungyeon Kim, Jeongin Song, Jeesun Lee, Sehoon Park, Min Hyuk Lim, Joong Shin Park, Hyung-Jin Yoon, Seung Mi Lee, Hajeong Lee","doi":"10.1038/s43856-026-01397-w","DOIUrl":"https://doi.org/10.1038/s43856-026-01397-w","url":null,"abstract":"<p><strong>Background: </strong>Maternal chronic kidney disease (CKD) is associated with an increased risk of adverse pregnancy outcomes. However, the overall risk of congenital malformations (CMs) in offspring of mothers with kidney disease, including CKD and end-stage kidney disease (ESKD), remains unclear.</p><p><strong>Methods: </strong>In this nationwide cohort study, we analyzed National Health Insurance Service (NHIS) data from 2,680,092 women who gave birth between 2008 and 2017. Major CMs were identified using the International Classification of Diseases-10 (ICD-10) codes during the first 12 months after birth. A multivariable generalized estimating equation model was used to compare the risk of CMs between women with CKD or ESKD, including those on dialysis and post-kidney transplantation (KT), and healthy controls.</p><p><strong>Results: </strong>Major CMs prevalence is 4.79% in offspring of healthy mothers, 5.29% in CKD mothers, and 9.65% in ESKD mothers, with congenital heart defects being the most common anomaly across all groups. After adjustment, mothers with kidney diseases show a higher risk of major CMs than healthy controls (adjusted odds ratio [aOR], 1.07; 95% confidence interval [CI], 1.03-1.11 in CKD; aOR, 1.71; 95% CI, 1.16-2.52 in ESKD, respectively). Among ESKD patients, KT recipients show an increased risk (aOR, 1.65; 95% CI, 1.06-2.59), but dialysis patients do not reach statistical significance (aOR, 2.02; 95% CI, 0.92-4.41).</p><p><strong>Conclusions: </strong>Our findings suggest that neonates born to mothers with kidney diseases have an increased risk of CMs compared to those born to healthy mothers.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146151347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessment of mental and behavioural non-motor symptoms of Parkinson's Disease using Artificial Intelligence (AI): a systematic review. 使用人工智能(AI)评估帕金森病的精神和行为非运动症状:系统综述
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-09 DOI: 10.1038/s43856-025-01304-9
Shantao Chloe Chou, Cen Cong, Rosiered Brownson-Smith, Madison Milne-Ives, Edward Meinert

Background: Parkinson's disease is a progressive neurodegenerative disorder with both motor and non-motor symptoms. Mental and behavioural non-motor symptoms such as cognitive impairment, sleep disturbances, depression, and anxiety greatly affect quality of life but remain difficult to assess with traditional tools. Artificial intelligence has shown potential in healthcare, yet its role in evaluating these symptoms in Parkinson's disease remains under-reviewed. This systematic review aims to evaluate the performance of artificial intelligence tools in diagnosing, assessing, and managing these symptoms.

Methods: Five databases (Medline, Embase, Scopus, Web of Science and PubMed) were searched up to June 2024 for peer-reviewed studies applying artificial intelligence to mental or behavioural symptoms in adults with Parkinson's disease. Studies published before 2010 or lacking artificial-intelligence technologies were excluded. Study quality and risk of bias were assessed using QUADAS-2. Extracted data include study objectives, data sources, algorithms, best model, and diagnostic performance (accuracy, sensitivity, specificity). The study received no external financial support.

Results: Here we show sixteen studies examine cognitive impairment and seven examine sleep disorders. However, only three studies focus on depression and one on anxiety, revealing a research gap. No meta-analysis was performed due to heterogeneity.

Conclusions: Artificial intelligence shows promise for assessing mental and behavioural symptoms in Parkinson's disease, particularly cognitive and sleep disorders. Multimodal models demonstrate higher accuracy than single-source models, though external validation is necessary. The limited studies on depression and anxiety reflect existing diagnostic challenges and data limitations. Future research should refine diagnostic tools and expand multimodal approaches to these symptoms.

背景:帕金森病是一种伴有运动和非运动症状的进行性神经退行性疾病。精神和行为非运动症状,如认知障碍、睡眠障碍、抑郁和焦虑,极大地影响生活质量,但仍难以用传统工具进行评估。人工智能在医疗保健方面已经显示出潜力,但它在评估帕金森病症状方面的作用仍未得到充分评价。本系统综述旨在评估人工智能工具在诊断、评估和管理这些症状方面的表现。方法:检索截至2024年6月的五个数据库(Medline、Embase、Scopus、Web of Science和PubMed),检索将人工智能应用于帕金森病成人精神或行为症状的同行评审研究。2010年之前发表或缺乏人工智能技术的研究被排除在外。采用QUADAS-2评估研究质量和偏倚风险。提取的数据包括研究目的、数据源、算法、最佳模型和诊断性能(准确性、敏感性、特异性)。这项研究没有得到外部财政支持。结果:这里我们展示了16项关于认知障碍的研究,7项关于睡眠障碍的研究。然而,只有3项研究关注抑郁症,1项研究关注焦虑,显示出研究差距。由于异质性,未进行meta分析。结论:人工智能有望评估帕金森病的精神和行为症状,特别是认知和睡眠障碍。尽管需要外部验证,但多模态模型比单源模型显示出更高的准确性。对抑郁和焦虑的有限研究反映了现有的诊断挑战和数据限制。未来的研究应完善诊断工具,并扩大对这些症状的多模式方法。
{"title":"Assessment of mental and behavioural non-motor symptoms of Parkinson's Disease using Artificial Intelligence (AI): a systematic review.","authors":"Shantao Chloe Chou, Cen Cong, Rosiered Brownson-Smith, Madison Milne-Ives, Edward Meinert","doi":"10.1038/s43856-025-01304-9","DOIUrl":"https://doi.org/10.1038/s43856-025-01304-9","url":null,"abstract":"<p><strong>Background: </strong>Parkinson's disease is a progressive neurodegenerative disorder with both motor and non-motor symptoms. Mental and behavioural non-motor symptoms such as cognitive impairment, sleep disturbances, depression, and anxiety greatly affect quality of life but remain difficult to assess with traditional tools. Artificial intelligence has shown potential in healthcare, yet its role in evaluating these symptoms in Parkinson's disease remains under-reviewed. This systematic review aims to evaluate the performance of artificial intelligence tools in diagnosing, assessing, and managing these symptoms.</p><p><strong>Methods: </strong>Five databases (Medline, Embase, Scopus, Web of Science and PubMed) were searched up to June 2024 for peer-reviewed studies applying artificial intelligence to mental or behavioural symptoms in adults with Parkinson's disease. Studies published before 2010 or lacking artificial-intelligence technologies were excluded. Study quality and risk of bias were assessed using QUADAS-2. Extracted data include study objectives, data sources, algorithms, best model, and diagnostic performance (accuracy, sensitivity, specificity). The study received no external financial support.</p><p><strong>Results: </strong>Here we show sixteen studies examine cognitive impairment and seven examine sleep disorders. However, only three studies focus on depression and one on anxiety, revealing a research gap. No meta-analysis was performed due to heterogeneity.</p><p><strong>Conclusions: </strong>Artificial intelligence shows promise for assessing mental and behavioural symptoms in Parkinson's disease, particularly cognitive and sleep disorders. Multimodal models demonstrate higher accuracy than single-source models, though external validation is necessary. The limited studies on depression and anxiety reflect existing diagnostic challenges and data limitations. Future research should refine diagnostic tools and expand multimodal approaches to these symptoms.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146151322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cross-organ analysis reveals associations between vascular properties of the retina, the carotid and aortic arteries, and the brain. 跨器官分析揭示了视网膜、颈动脉、主动脉和大脑的血管特性之间的联系。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-09 DOI: 10.1038/s43856-025-01310-x
Sofía Ortín Vela, Sven Bergmann

Background: Vascular properties of the retina are indicative of both ocular and systemic cardio- and cerebrovascular health. However, the specific relationships between retinal and non-retinal vascular phenotypes have not been systematically investigated in large samples. This study aims to compare cross-organ phenotypic and genetic relationships between vascular characteristics across different body sites.

Methods: We compared vascular image-derived phenotypes from the brain, carotid artery, aorta, and retina, using UK Biobank sample sizes ranging from 18,808 to 68,740 participants. We examined phenotypic and genetic correlations, as well as common associated genes and pathways.

Results: Here we show that white matter hyperintensities are positively correlated with carotid intima-media thickness (r = 0.03), lumen diameter (r = 0.14), and aortic cross-sectional areas (r = 0.09), but negatively correlated with aortic distensibilities (r ≤ -0.05). Arterial retinal vascular density shows negative correlations with white matter hyperintensities (r = -0.04), intima-media thickness (r = -0.04), lumen diameter (r = -0.06), and aortic areas (r = -0.05), while positively correlating with aortic distensibilities (r = 0.04). Significant correlations also persist after correcting for hypertension.

Conclusions: Our findings shed light on the complex interplay between vascular morphology across different organs, revealing both shared and distinct genetic underpinnings. Retinal vascular features reflect broader systemic vascular morphology and offer an accessible window into cardio- and cerebrovascular health.

背景:视网膜的血管特性是眼部和全身心脑血管健康的指示。然而,视网膜和非视网膜血管表型之间的特定关系尚未在大样本中进行系统研究。本研究旨在比较不同身体部位血管特征之间的跨器官表型和遗传关系。方法:我们比较了来自大脑、颈动脉、主动脉和视网膜的血管图像衍生表型,使用UK Biobank的样本量从18,808到68,740名参与者。我们检查了表型和遗传相关性,以及常见的相关基因和途径。结果:白质高信号与颈动脉内膜-中膜厚度(r = 0.03)、管腔直径(r = 0.14)、主动脉横截面积(r = 0.09)呈正相关,与主动脉扩张率呈负相关(r≤-0.05)。动脉视网膜血管密度与白质高信号(r = -0.04)、内膜-中膜厚度(r = -0.04)、管腔直径(r = -0.06)、主动脉面积(r = -0.05)呈负相关,与主动脉扩张率呈正相关(r = 0.04)。在纠正高血压后,显著的相关性仍然存在。结论:我们的发现揭示了不同器官血管形态之间复杂的相互作用,揭示了共同的和独特的遗传基础。视网膜血管特征反映了更广泛的系统血管形态,并为心脑血管健康提供了一个可接近的窗口。
{"title":"Cross-organ analysis reveals associations between vascular properties of the retina, the carotid and aortic arteries, and the brain.","authors":"Sofía Ortín Vela, Sven Bergmann","doi":"10.1038/s43856-025-01310-x","DOIUrl":"https://doi.org/10.1038/s43856-025-01310-x","url":null,"abstract":"<p><strong>Background: </strong>Vascular properties of the retina are indicative of both ocular and systemic cardio- and cerebrovascular health. However, the specific relationships between retinal and non-retinal vascular phenotypes have not been systematically investigated in large samples. This study aims to compare cross-organ phenotypic and genetic relationships between vascular characteristics across different body sites.</p><p><strong>Methods: </strong>We compared vascular image-derived phenotypes from the brain, carotid artery, aorta, and retina, using UK Biobank sample sizes ranging from 18,808 to 68,740 participants. We examined phenotypic and genetic correlations, as well as common associated genes and pathways.</p><p><strong>Results: </strong>Here we show that white matter hyperintensities are positively correlated with carotid intima-media thickness (r = 0.03), lumen diameter (r = 0.14), and aortic cross-sectional areas (r = 0.09), but negatively correlated with aortic distensibilities (r ≤ -0.05). Arterial retinal vascular density shows negative correlations with white matter hyperintensities (r = -0.04), intima-media thickness (r = -0.04), lumen diameter (r = -0.06), and aortic areas (r = -0.05), while positively correlating with aortic distensibilities (r = 0.04). Significant correlations also persist after correcting for hypertension.</p><p><strong>Conclusions: </strong>Our findings shed light on the complex interplay between vascular morphology across different organs, revealing both shared and distinct genetic underpinnings. Retinal vascular features reflect broader systemic vascular morphology and offer an accessible window into cardio- and cerebrovascular health.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146151307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A prospective study of age-related functional impairments, mortality, and life expectancy of Chinese adults aged 50. 中国50岁成人年龄相关功能障碍、死亡率和预期寿命的前瞻性研究
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-09 DOI: 10.1038/s43856-025-01350-3
Hui Chen, Binghan Wang, Minqing Yan, Ting Shen, Mengjia Zhao, Yanping Li, Xiaolin Xu, Klodian Dhana, Xiaobo Yang, An Pan, Changzheng Yuan

Background: The population distribution of age-related functional impairments (ARFIs) and their associations with mortality and life expectancy (LE) among Chinese adults remain poorly understood.

Methods: We included 12,906 participants (mean age: 62.6 years) from the China Health and Retirement Longitudinal Study. Visual impairment, hearing impairment, cognitive impairment, sleep disorder, depressive symptoms, and disability in activities of daily living (ADL) were assessed. Cox proportional hazards models were used to estimate the associations of ARFIs with all-cause mortality. Life expectancy at age 50 was estimated by the presence and number of key ARFIs.

Results: The six ARFIs exhibit distinct distributions by ages and provinces across China. During the 9-year follow-up, ADL disability, cognitive impairment, and depressive symptoms are independently associated with 64% (95% confidence interval [CI]: 48%-80%), 41% (21%-64%), and 20% (8%-33%) higher risks of mortality, corresponding to LE losses of 4.45, 3.08, and 1.59 years at the age of 50 years. A greater number of key ARFIs is associated with higher mortality risk in a dose-response manner (hazard ratios [95% CI] vs. none: 1.23 [1.11-1.36] for one, 1.42 [1.26-1.61] for two, and 1.86 [1.47-2.36] for three) and greater LE loss (1.63 [1.35-1.90] years for one, 3.37 [3.02-3.71] for two, and 4.96 [4.22-5.71] for three, with three ARFIs accounting for 17% of total LE).

Conclusions: The study highlights the important roles of co-existing ARFIs in mortality and LE loss. Integrated prevention strategies and management systems for multiple functional impairments are warranted in the context of rapid population aging.

背景:中国成年人年龄相关性功能障碍(arfi)的人群分布及其与死亡率和预期寿命(LE)的关系尚不清楚。方法:我们纳入了来自中国健康与退休纵向研究的12906名参与者(平均年龄:62.6岁)。评估视力障碍、听力障碍、认知障碍、睡眠障碍、抑郁症状和日常生活活动障碍(ADL)。Cox比例风险模型用于估计arfi与全因死亡率的关系。50岁时的预期寿命是通过主要arfi的存在和数量来估计的。结果:6种arfi在不同年龄、不同省份有明显的分布。在9年的随访中,ADL残疾、认知障碍和抑郁症状与死亡风险增加64%(95%可信区间[CI]: 48%-80%)、41%(21%-64%)和20%(8%-33%)独立相关,对应于50岁时LE损失分别为4.45、3.08和1.59年。关键arfi数量越多,在剂量-反应方式中死亡风险越高(风险比[95% CI] vs.无:1例为1.23[1.11-1.36],2例为1.42[1.26-1.61],3例为1.86 [1.47-2.36]),LE损失越大(1例为1.63[1.35-1.90]年,2例为3.37[3.02-3.71]年,3例为4.96[4.22-5.71]年,其中3例arfi占总LE的17%)。结论:该研究强调了共存的arfi在死亡率和LE损失中的重要作用。在人口快速老龄化的背景下,多种功能障碍的综合预防策略和管理系统是必要的。
{"title":"A prospective study of age-related functional impairments, mortality, and life expectancy of Chinese adults aged 50.","authors":"Hui Chen, Binghan Wang, Minqing Yan, Ting Shen, Mengjia Zhao, Yanping Li, Xiaolin Xu, Klodian Dhana, Xiaobo Yang, An Pan, Changzheng Yuan","doi":"10.1038/s43856-025-01350-3","DOIUrl":"https://doi.org/10.1038/s43856-025-01350-3","url":null,"abstract":"<p><strong>Background: </strong>The population distribution of age-related functional impairments (ARFIs) and their associations with mortality and life expectancy (LE) among Chinese adults remain poorly understood.</p><p><strong>Methods: </strong>We included 12,906 participants (mean age: 62.6 years) from the China Health and Retirement Longitudinal Study. Visual impairment, hearing impairment, cognitive impairment, sleep disorder, depressive symptoms, and disability in activities of daily living (ADL) were assessed. Cox proportional hazards models were used to estimate the associations of ARFIs with all-cause mortality. Life expectancy at age 50 was estimated by the presence and number of key ARFIs.</p><p><strong>Results: </strong>The six ARFIs exhibit distinct distributions by ages and provinces across China. During the 9-year follow-up, ADL disability, cognitive impairment, and depressive symptoms are independently associated with 64% (95% confidence interval [CI]: 48%-80%), 41% (21%-64%), and 20% (8%-33%) higher risks of mortality, corresponding to LE losses of 4.45, 3.08, and 1.59 years at the age of 50 years. A greater number of key ARFIs is associated with higher mortality risk in a dose-response manner (hazard ratios [95% CI] vs. none: 1.23 [1.11-1.36] for one, 1.42 [1.26-1.61] for two, and 1.86 [1.47-2.36] for three) and greater LE loss (1.63 [1.35-1.90] years for one, 3.37 [3.02-3.71] for two, and 4.96 [4.22-5.71] for three, with three ARFIs accounting for 17% of total LE).</p><p><strong>Conclusions: </strong>The study highlights the important roles of co-existing ARFIs in mortality and LE loss. Integrated prevention strategies and management systems for multiple functional impairments are warranted in the context of rapid population aging.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146151375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Distinct prophage infections in colorectal cancer-associated Bacteroides fragilis. 结直肠癌相关脆弱拟杆菌的不同前噬菌体感染。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-07 DOI: 10.1038/s43856-026-01403-1
Flemming Damgaard, Magnus G Jespersen, Jens K Møller, John E Coia, Ram B Dessau, Thomas V Sydenham, Mikael L Strube, Jakob Møller-Jensen, Ulrik S Justesen

Background: Colorectal cancer (CRC) patients exhibit distinct gut microbiota disruption, known as dysbiosis, which is believed to play a causative role in CRC. One of the key bacterial species implicated in CRC dysbiosis is Bacteroides fragilis, which presents a paradox as it is also present in most healthy individuals. This discrepancy underscores the need for analysis beyond species-level associations and to investigate intraspecies variation within B. fragilis.

Methods: From a highly specific collection of B. fragilis isolates from CRC patients and controls, a pangenome-wide association study was conducted, identifying intraspecies genetic variations associated with CRC. The CRC association of these genetic variations were then validated in a metagenome sequencing cohort of faecal samples from 877 individuals, with and without CRC. To test group differences a mixed effects logistic regression with cohort as a random effect was performed for each genetic variation.

Results: Here we show that CRC-associated B. fragilis isolates are infected with specific Caudoviricetes prophages, significantly more often than negative controls. The initial discovery was made in our highly specific isolate collection and then validated in an independent metagenome sequencing cohort, finding that CRC patients were twice as likely to have detectable levels of these phages (OR = 2.05, p = 2.522E-7, SE = 0.139).

Conclusions: To our knowledge, these findings mark the first link between one of the most implicated driver bacteria and phages in CRC and suggest a more complex role of phages in CRC dysbiosis than current models suggest and highlights the potential of phages as CRC biomarkers.

背景:结直肠癌(CRC)患者表现出明显的肠道微生物群破坏,称为生态失调,这被认为是结直肠癌的病因。与结直肠癌生态失调有关的关键细菌之一是脆弱拟杆菌,这是一个悖论,因为它也存在于大多数健康个体中。这种差异强调了需要进行超越物种水平的关联分析,并调查脆弱芽孢杆菌的种内变异。方法:从CRC患者和对照组中高度特异性收集脆弱芽孢杆菌分离株,进行全基因组关联研究,确定与CRC相关的种内遗传变异。这些遗传变异与结直肠癌的关联随后在877例有结直肠癌和无结直肠癌个体的粪便样本的宏基因组测序队列中得到验证。为了检验组间差异,对每个遗传变异采用混合效应logistic回归,队列作为随机效应。结果:我们发现crc相关的脆弱B.菌株被特异性尾状芽孢杆菌前噬菌体感染,明显高于阴性对照。最初的发现是在我们高度特异性的分离物收集中发现的,然后在独立的宏基因组测序队列中进行验证,发现CRC患者检测到这些噬菌体水平的可能性是其两倍(OR = 2.05, p = 2.522E-7, SE = 0.139)。结论:据我们所知,这些发现标志着CRC中最相关的驱动细菌之一与噬菌体之间的第一个联系,并且表明噬菌体在CRC生态失调中的作用比当前模型所显示的更为复杂,并突出了噬菌体作为CRC生物标志物的潜力。
{"title":"Distinct prophage infections in colorectal cancer-associated Bacteroides fragilis.","authors":"Flemming Damgaard, Magnus G Jespersen, Jens K Møller, John E Coia, Ram B Dessau, Thomas V Sydenham, Mikael L Strube, Jakob Møller-Jensen, Ulrik S Justesen","doi":"10.1038/s43856-026-01403-1","DOIUrl":"https://doi.org/10.1038/s43856-026-01403-1","url":null,"abstract":"<p><strong>Background: </strong>Colorectal cancer (CRC) patients exhibit distinct gut microbiota disruption, known as dysbiosis, which is believed to play a causative role in CRC. One of the key bacterial species implicated in CRC dysbiosis is Bacteroides fragilis, which presents a paradox as it is also present in most healthy individuals. This discrepancy underscores the need for analysis beyond species-level associations and to investigate intraspecies variation within B. fragilis.</p><p><strong>Methods: </strong>From a highly specific collection of B. fragilis isolates from CRC patients and controls, a pangenome-wide association study was conducted, identifying intraspecies genetic variations associated with CRC. The CRC association of these genetic variations were then validated in a metagenome sequencing cohort of faecal samples from 877 individuals, with and without CRC. To test group differences a mixed effects logistic regression with cohort as a random effect was performed for each genetic variation.</p><p><strong>Results: </strong>Here we show that CRC-associated B. fragilis isolates are infected with specific Caudoviricetes prophages, significantly more often than negative controls. The initial discovery was made in our highly specific isolate collection and then validated in an independent metagenome sequencing cohort, finding that CRC patients were twice as likely to have detectable levels of these phages (OR = 2.05, p = 2.522E-7, SE = 0.139).</p><p><strong>Conclusions: </strong>To our knowledge, these findings mark the first link between one of the most implicated driver bacteria and phages in CRC and suggest a more complex role of phages in CRC dysbiosis than current models suggest and highlights the potential of phages as CRC biomarkers.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146138170","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Changes in temperature perception in transgender persons undergoing gender-affirming hormone therapy. 变性人接受性别确认激素治疗后体温感知的变化。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-07 DOI: 10.1038/s43856-026-01420-0
Pauline Zimmermann, Martin Kaar, Theresa Bokeloh, Lotta Moll, Franziska Labinski, Falk Eippert, Matthias Blüher, Michael Stumvoll, Sascha Heinitz, Haiko Schlögl

Background: There are known sex disparities in temperature perception with lower thermal detection thresholds found in people assigned female at birth compared to people assigned male at birth. However, underlying mechanisms of these differences and the influences of sex hormones are not yet sufficiently understood.

Methods: To assess the effects of sex hormones on temperature perception, we measured in a prospective observational cohort study temperature detection and pain thresholds with quantitative sensory testing and subjective temperature sensation in transgender patients undergoing gender-affirming hormone therapy (GAHT). We included 12 trans women (male-to-female transgender) and 17 trans men (female-to-male transgender) before and 3 and 6 months after start of GAHT. As a control group, we measured 13 cis women and 10 cis men without hormone treatment at the same timepoints.

Results: Here we show that temperature detection thresholds in persons assigned female at birth at baseline are lower than in persons assigned male at birth. Accordingly, in trans women, temperature detection thresholds decrease with GAHT. Pain detection thresholds do not differ between sexes assigned at birth and do not change with time.

Conclusions: We demonstrate that in trans women undergoing GAHT with estradiol and cyproterone acetate sensitivity to temperature changes increases, consistent with the greater temperature sensitivity observed in cis women compared to cis men. Future studies need to assess at which neurobiological processing stages the relevant changes occur and what molecular mechanisms play a role.

Trial registration: NCT04838249.

背景:已知在温度感知方面存在性别差异,与出生时被指定为女性的人相比,出生时被指定为男性的人的热探测阈值较低。然而,这些差异的潜在机制和性激素的影响尚未得到充分的了解。方法:为了评估性激素对温度感知的影响,我们在一项前瞻性观察队列研究中,用定量感觉测试和主观温度感觉测量了接受性别肯定激素治疗(GAHT)的变性患者的温度检测和疼痛阈值。我们纳入了12名变性女性(男变女变性者)和17名变性男性(女变男变性者),分别在GAHT开始前和开始后3个月和6个月。作为对照组,我们在同一时间点测量了未接受激素治疗的13名顺式女性和10名顺式男性。结果:在这里,我们表明,在基线时,出生时被指定为女性的人的温度检测阈值低于出生时被指定为男性的人。因此,在跨性别女性中,温度检测阈值随着GAHT而降低。疼痛检测阈值在出生时没有性别差异,也不随时间变化。结论:我们证明,在使用雌二醇和醋酸环丙孕酮进行GAHT的跨性别女性中,对温度变化的敏感性增加,与顺式女性比顺式男性观察到的更大的温度敏感性一致。未来的研究需要评估相关的变化发生在哪个神经生物学处理阶段,以及哪些分子机制起作用。试验注册:NCT04838249。
{"title":"Changes in temperature perception in transgender persons undergoing gender-affirming hormone therapy.","authors":"Pauline Zimmermann, Martin Kaar, Theresa Bokeloh, Lotta Moll, Franziska Labinski, Falk Eippert, Matthias Blüher, Michael Stumvoll, Sascha Heinitz, Haiko Schlögl","doi":"10.1038/s43856-026-01420-0","DOIUrl":"https://doi.org/10.1038/s43856-026-01420-0","url":null,"abstract":"<p><strong>Background: </strong>There are known sex disparities in temperature perception with lower thermal detection thresholds found in people assigned female at birth compared to people assigned male at birth. However, underlying mechanisms of these differences and the influences of sex hormones are not yet sufficiently understood.</p><p><strong>Methods: </strong>To assess the effects of sex hormones on temperature perception, we measured in a prospective observational cohort study temperature detection and pain thresholds with quantitative sensory testing and subjective temperature sensation in transgender patients undergoing gender-affirming hormone therapy (GAHT). We included 12 trans women (male-to-female transgender) and 17 trans men (female-to-male transgender) before and 3 and 6 months after start of GAHT. As a control group, we measured 13 cis women and 10 cis men without hormone treatment at the same timepoints.</p><p><strong>Results: </strong>Here we show that temperature detection thresholds in persons assigned female at birth at baseline are lower than in persons assigned male at birth. Accordingly, in trans women, temperature detection thresholds decrease with GAHT. Pain detection thresholds do not differ between sexes assigned at birth and do not change with time.</p><p><strong>Conclusions: </strong>We demonstrate that in trans women undergoing GAHT with estradiol and cyproterone acetate sensitivity to temperature changes increases, consistent with the greater temperature sensitivity observed in cis women compared to cis men. Future studies need to assess at which neurobiological processing stages the relevant changes occur and what molecular mechanisms play a role.</p><p><strong>Trial registration: </strong>NCT04838249.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146138124","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning to infer neurocognitive testing scores among adolescents and young adults with congenital heart disease. 用机器学习来推断患有先天性心脏病的青少年和年轻人的神经认知测试分数。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-06 DOI: 10.1038/s43856-026-01417-9
Mohammad Arafat Hussain, Sheng He, Heather R Adams, Evdokia Anagnoustou, David C Bellinger, Martina Brueckner, Wendy K Chung, John Cleveland, Bruce D Gelb, Elizabeth Goldmuntz, Donald J Hagler, Hao Huang, Patrick McQuillen, Thomas A Miller, Ami Norris-Brilliant, George A Porter, Nina Thomas, Madalina E Tivarus, Duan Xu, Yufeng Shen, Jane W Newburger, P Ellen Grant, Sarah U Morton, Yangming Ou

Background: Congenital heart disease (CHD) affects about 1% of births and is linked to differences in thinking and learning. Understanding how birth, genetic, clinical, and environmental factors together explain cognitive variability can inform monitoring and care. This study builds a multivariate model predicting cognition across multiple domains in adolescents and young adults with CHD.

Methods: We studied 89 adolescents and young adults (AYAs; mean age 16 years) with CHD who completed structural and diffusion MRI and fifteen neurocognitive tests across seven domains. Using an enhanced forward-inclusion and backward-elimination strategy with cross-validation, we built multivariate models incorporating biological, socioeconomic, clinical, genetic, and brain imaging features. Performance was evaluated using Pearson correlation (r) between observed and inferred scores, mean absolute error (MAE), and inverse inferability score (IIS).

Results: Here we show that models infer scores with moderate accuracy (r = 0.245-0.648; MAE = 1.6-12.0 points; mean MAE = 6.3). Highest correlations include Digit Span (r = 0.65; p < 0.001), Verbal Comprehension Index (r = 0.594; p < 0.001), and Matrix Reasoning (r = 0.574; p < 0.001). Domain ranking by IIS shows the best (lowest) scores for general intelligence (0.0886), followed by working memory (0.7100), and a higher (worse) score for perceptual reasoning (1.9199).

Conclusions: A multivariate approach combining brain imaging with genetic, clinical, and environmental factors provides clinically meaningful inference of individual cognitive performance in AYAs with CHD. These findings suggest complementary roles of brain, genetic, and contextual factors in shaping cognitive variability and motivate validation in larger cohorts.

背景:先天性心脏病(CHD)影响约1%的新生儿,与思维和学习能力的差异有关。了解出生、遗传、临床和环境因素如何共同解释认知变异,可以为监测和护理提供信息。本研究建立了预测青少年和青年冠心病患者多领域认知的多变量模型。方法:我们研究了89名患有冠心病的青少年和年轻人(AYAs,平均年龄16岁),他们完成了结构和扩散MRI以及七个领域的15项神经认知测试。使用增强的前向纳入和后向排除策略并进行交叉验证,我们建立了包含生物学、社会经济、临床、遗传和脑成像特征的多变量模型。使用观察得分和推断得分之间的Pearson相关性(r)、平均绝对误差(MAE)和逆推断得分(IIS)来评估性能。结果:这里我们显示模型推断得分具有中等准确度(r = 0.245-0.648; MAE = 1.6-12.0分;平均MAE = 6.3)。结论:将脑成像与遗传、临床和环境因素相结合的多因素方法对冠心病AYAs患者的个体认知表现提供了具有临床意义的推断。这些发现表明,大脑、遗传和环境因素在形成认知变异性和在更大的群体中激发有效性方面具有互补作用。
{"title":"Machine learning to infer neurocognitive testing scores among adolescents and young adults with congenital heart disease.","authors":"Mohammad Arafat Hussain, Sheng He, Heather R Adams, Evdokia Anagnoustou, David C Bellinger, Martina Brueckner, Wendy K Chung, John Cleveland, Bruce D Gelb, Elizabeth Goldmuntz, Donald J Hagler, Hao Huang, Patrick McQuillen, Thomas A Miller, Ami Norris-Brilliant, George A Porter, Nina Thomas, Madalina E Tivarus, Duan Xu, Yufeng Shen, Jane W Newburger, P Ellen Grant, Sarah U Morton, Yangming Ou","doi":"10.1038/s43856-026-01417-9","DOIUrl":"https://doi.org/10.1038/s43856-026-01417-9","url":null,"abstract":"<p><strong>Background: </strong>Congenital heart disease (CHD) affects about 1% of births and is linked to differences in thinking and learning. Understanding how birth, genetic, clinical, and environmental factors together explain cognitive variability can inform monitoring and care. This study builds a multivariate model predicting cognition across multiple domains in adolescents and young adults with CHD.</p><p><strong>Methods: </strong>We studied 89 adolescents and young adults (AYAs; mean age 16 years) with CHD who completed structural and diffusion MRI and fifteen neurocognitive tests across seven domains. Using an enhanced forward-inclusion and backward-elimination strategy with cross-validation, we built multivariate models incorporating biological, socioeconomic, clinical, genetic, and brain imaging features. Performance was evaluated using Pearson correlation (<math><mi>r</mi></math>) between observed and inferred scores, mean absolute error (MAE), and inverse inferability score (IIS).</p><p><strong>Results: </strong>Here we show that models infer scores with moderate accuracy (<math><mi>r</mi></math> = 0.245-0.648; MAE = 1.6-12.0 points; mean MAE = 6.3). Highest correlations include Digit Span (<math><mi>r</mi></math> = 0.65; p < 0.001), Verbal Comprehension Index (<math><mi>r</mi></math> = 0.594; p < 0.001), and Matrix Reasoning (<math><mi>r</mi></math> = 0.574; p < 0.001). Domain ranking by IIS shows the best (lowest) scores for general intelligence (0.0886), followed by working memory (0.7100), and a higher (worse) score for perceptual reasoning (1.9199).</p><p><strong>Conclusions: </strong>A multivariate approach combining brain imaging with genetic, clinical, and environmental factors provides clinically meaningful inference of individual cognitive performance in AYAs with CHD. These findings suggest complementary roles of brain, genetic, and contextual factors in shaping cognitive variability and motivate validation in larger cohorts.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146133582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pembrolizumab and epigenetic modification with azacitidine reshapes the tumor microenvironment of platinum-resistant epithelial ovarian cancer: a phase 2 non-randomized clinical trial. 派姆单抗和阿扎胞苷表观遗传修饰重塑铂耐药上皮性卵巢癌的肿瘤微环境:一项2期非随机临床试验
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-06 DOI: 10.1038/s43856-026-01404-0
Blair V Landon, Julia L Boland, Andrea E Wahner Hendrickson, Deborah K Armstrong, Boris Winterhoff, Jaime Wehr, Akshaya V Annapragada, Christopher Cherry, Archana Balan, Guneet Kaleka, Victor E Velculescu, Stephen B Baylin, Cynthia A Zahnow, Dennis J Slamon, Gottfried E Konecny, Valsamo Anagnostou, John A Glaspy

Background: Epigenetic modulators may sensitize platinum-resistant ovarian cancer (PROC) to immune checkpoint inhibition by reprogramming the tumor microenvironment.

Methods: We report clinical and translational findings from a phase II non-randomized study of pembrolizumab and oral azacitidine in 34 women with PROC (NCT02900560). Key eligibility criteria included age 18 years or older, performance status of 0-1, measurable disease, platinum-resistant disease and histologically confirmed epithelial ovarian cancer, fallopian tube carcinoma or primary peritoneal carcinoma. Primary endpoints included safety, tolerability, overall response rate (ORR) and disease control rate (DCR). Secondary endpoints included CA-125 response. The effect of combined epigenetic and immunotherapy was evaluated by transcriptomic analyses of 72 serially biopsied tumors.

Results: We show that the combination is moderately well tolerated and most common grade 3-4 adverse events are gastrointestinal side effects and anemia. ORR is 2.9% and DCR is 50%; with 3 of the 27 evaluable patients attaining a CA-125 response. Differential gene expression analyses reveal an upregulation of inflammatory and cytolytic genes and co-inhibitory checkpoints 6 weeks on-therapy. Upregulation of interferon signaling, antigen presentation and immune cell adhesion and migration gene sets are prominent on-therapy, together with an increase in density of CD8 + T-cells. Patients with a CA-125 and/or clinical response show an enrichment of adaptive and conserved immune response gene sets on-therapy.

Conclusions: Our findings highlight the potential of epigenetic modulators to re-shape the tumor microenvironment of PROC toward a more inflammed phenotype and may point to approaches to augment immunotherapy response.

背景:表观遗传调节剂可能通过重新编程肿瘤微环境使铂耐药卵巢癌(PROC)对免疫检查点抑制敏感。方法:我们报告了一项II期非随机研究的临床和转化结果,该研究使用派姆单抗和口服阿扎胞苷治疗34名PROC女性(NCT02900560)。主要入选标准包括年龄18岁及以上、运动状态0-1、可测量疾病、铂耐药疾病和组织学证实的上皮性卵巢癌、输卵管癌或原发性腹膜癌。主要终点包括安全性、耐受性、总缓解率(ORR)和疾病控制率(DCR)。次要终点包括CA-125反应。通过对72例连续活检的肿瘤进行转录组学分析,评估表观遗传和免疫联合治疗的效果。结果:我们发现联合用药耐受性良好,最常见的3-4级不良事件是胃肠道副作用和贫血。ORR为2.9%,DCR为50%;27例可评估患者中有3例达到CA-125反应。差异基因表达分析显示,在治疗6周后,炎症和细胞溶解基因和共抑制检查点上调。干扰素信号、抗原呈递、免疫细胞粘附和迁移基因集的上调在治疗中是突出的,同时CD8 + t细胞密度增加。CA-125和/或临床反应的患者在治疗中表现出适应性和保守性免疫反应基因集的丰富。结论:我们的研究结果强调了表观遗传调节剂重塑PROC肿瘤微环境的潜力,使其向更炎症的表型发展,并可能指出增强免疫治疗反应的方法。
{"title":"Pembrolizumab and epigenetic modification with azacitidine reshapes the tumor microenvironment of platinum-resistant epithelial ovarian cancer: a phase 2 non-randomized clinical trial.","authors":"Blair V Landon, Julia L Boland, Andrea E Wahner Hendrickson, Deborah K Armstrong, Boris Winterhoff, Jaime Wehr, Akshaya V Annapragada, Christopher Cherry, Archana Balan, Guneet Kaleka, Victor E Velculescu, Stephen B Baylin, Cynthia A Zahnow, Dennis J Slamon, Gottfried E Konecny, Valsamo Anagnostou, John A Glaspy","doi":"10.1038/s43856-026-01404-0","DOIUrl":"https://doi.org/10.1038/s43856-026-01404-0","url":null,"abstract":"<p><strong>Background: </strong>Epigenetic modulators may sensitize platinum-resistant ovarian cancer (PROC) to immune checkpoint inhibition by reprogramming the tumor microenvironment.</p><p><strong>Methods: </strong>We report clinical and translational findings from a phase II non-randomized study of pembrolizumab and oral azacitidine in 34 women with PROC (NCT02900560). Key eligibility criteria included age 18 years or older, performance status of 0-1, measurable disease, platinum-resistant disease and histologically confirmed epithelial ovarian cancer, fallopian tube carcinoma or primary peritoneal carcinoma. Primary endpoints included safety, tolerability, overall response rate (ORR) and disease control rate (DCR). Secondary endpoints included CA-125 response. The effect of combined epigenetic and immunotherapy was evaluated by transcriptomic analyses of 72 serially biopsied tumors.</p><p><strong>Results: </strong>We show that the combination is moderately well tolerated and most common grade 3-4 adverse events are gastrointestinal side effects and anemia. ORR is 2.9% and DCR is 50%; with 3 of the 27 evaluable patients attaining a CA-125 response. Differential gene expression analyses reveal an upregulation of inflammatory and cytolytic genes and co-inhibitory checkpoints 6 weeks on-therapy. Upregulation of interferon signaling, antigen presentation and immune cell adhesion and migration gene sets are prominent on-therapy, together with an increase in density of CD8 + T-cells. Patients with a CA-125 and/or clinical response show an enrichment of adaptive and conserved immune response gene sets on-therapy.</p><p><strong>Conclusions: </strong>Our findings highlight the potential of epigenetic modulators to re-shape the tumor microenvironment of PROC toward a more inflammed phenotype and may point to approaches to augment immunotherapy response.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146133609","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative genomic and literature assessment of desmoglein 2-related arrhythmogenic cardiomyopathy with Italian cohort validation. 用意大利队列验证对桥蛋白2相关的心律失常性心肌病进行综合基因组学和文献评估。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-06 DOI: 10.1038/s43856-026-01416-w
Serena Pinci, Rudy Celeghin, Marika Martini, Monica De Gaspari, Maria Bueno Marinas, Giulia Tosato, Francesca Dalla Zanna, Marco Cason, Ilaria Rigato, Gaetano Thiene, Stefania Rizzo, Domenico Corrado, Cristina Basso, Barbara Bauce, Kalliopi Pilichou

Background: Desmoglein-2 (DSG2) is an essential cardiac desmosomal cadherin, and its alteration underlies a broad spectrum of arrhythmogenic cardiomyopathy (ACM). Yet, the clinical significance of many DSG2 variants remains uncertain. This study aimed to systematically characterize the spectrum, structural impact, and clinical relevance of DSG2 variants by integrating large-scale genomic evidence, published data, and a deeply phenotyped validation cohort.

Methods: We conducted a systematic literature review (115 studies; 145 curated variants) and analyzed population-scale datasets (3570 variants in gnomAD; 1847 in ClinVar). All variants were uniformly reclassified following ACMG/ClinGen criteria. A validation cohort of 95 Italian DSG2-carriers underwent detailed phenotyping. Structural modeling via AlphaFold, supported protein modeling, calcium-binding site prediction, and DynaMut stability analysis were performed to evaluate the functional consequences of key variants.

Results: Literature and database integration reveal domain-specific variant clustering, with high-impact missense variants enriched in calcium-binding extracellular domains, the furin cleavage site, and the intracellular PKP2-binding region. In the validation cohort, penetrance among genotype-positive relatives is 42%, while 13% of definite ACM cases experience major ventricular arrhythmias; transplantation and mortality each occur in 3%. Biallelic and digenic variants are associated with earlier onset and more severe biventricular involvement. Structural modeling confirms that pathogenic missense substitutions destabilize DSG2 architecture or impair calcium-dependent adhesion.

Conclusions: This study refines the classification of DSG2 variants and highlights the importance of domain-level and multilocus interpretation in ACM. These findings support comprehensive genetic screening, structural modeling for variant assessment, and lifelong follow-up of DSG2 carriers to improve diagnosis and risk stratification.

背景:桥粒蛋白-2 (DSG2)是一种必需的心脏桥粒体钙粘蛋白,它的改变是广泛的心律失常性心肌病(ACM)的基础。然而,许多DSG2变异的临床意义仍不确定。本研究旨在通过整合大规模基因组证据、已发表数据和深度表型验证队列,系统地表征DSG2变异的谱、结构影响和临床相关性。方法:我们进行了系统的文献综述(115项研究,145个筛选的变异),并分析了人群规模的数据集(gnomAD的3570个变异,ClinVar的1847个变异)。所有变异均按照ACMG/ClinGen标准统一重新分类。95名意大利dsg2携带者的验证队列进行了详细的表型分析。通过AlphaFold进行结构建模、支持蛋白建模、钙结合位点预测和DynaMut稳定性分析来评估关键变异的功能后果。结果:文献和数据库整合揭示了域特异性变异聚类,高影响错义变异富集于钙结合的细胞外结构域、furin切割位点和细胞内pkp2结合区。在验证队列中,基因型阳性亲属的外显率为42%,而13%的明确ACM病例经历严重室性心律失常;移植和死亡率各为3%。双等位基因和基因变异与更早发病和更严重的双心室受累有关。结构模型证实致病性错义取代破坏DSG2结构的稳定性或损害钙依赖性粘附。结论:本研究细化了DSG2变异的分类,强调了域水平和多位点解释在ACM中的重要性。这些发现支持对DSG2携带者进行全面的遗传筛查、变异评估的结构建模和终身随访,以提高诊断和风险分层。
{"title":"Integrative genomic and literature assessment of desmoglein 2-related arrhythmogenic cardiomyopathy with Italian cohort validation.","authors":"Serena Pinci, Rudy Celeghin, Marika Martini, Monica De Gaspari, Maria Bueno Marinas, Giulia Tosato, Francesca Dalla Zanna, Marco Cason, Ilaria Rigato, Gaetano Thiene, Stefania Rizzo, Domenico Corrado, Cristina Basso, Barbara Bauce, Kalliopi Pilichou","doi":"10.1038/s43856-026-01416-w","DOIUrl":"https://doi.org/10.1038/s43856-026-01416-w","url":null,"abstract":"<p><strong>Background: </strong>Desmoglein-2 (DSG2) is an essential cardiac desmosomal cadherin, and its alteration underlies a broad spectrum of arrhythmogenic cardiomyopathy (ACM). Yet, the clinical significance of many DSG2 variants remains uncertain. This study aimed to systematically characterize the spectrum, structural impact, and clinical relevance of DSG2 variants by integrating large-scale genomic evidence, published data, and a deeply phenotyped validation cohort.</p><p><strong>Methods: </strong>We conducted a systematic literature review (115 studies; 145 curated variants) and analyzed population-scale datasets (3570 variants in gnomAD; 1847 in ClinVar). All variants were uniformly reclassified following ACMG/ClinGen criteria. A validation cohort of 95 Italian DSG2-carriers underwent detailed phenotyping. Structural modeling via AlphaFold, supported protein modeling, calcium-binding site prediction, and DynaMut stability analysis were performed to evaluate the functional consequences of key variants.</p><p><strong>Results: </strong>Literature and database integration reveal domain-specific variant clustering, with high-impact missense variants enriched in calcium-binding extracellular domains, the furin cleavage site, and the intracellular PKP2-binding region. In the validation cohort, penetrance among genotype-positive relatives is 42%, while 13% of definite ACM cases experience major ventricular arrhythmias; transplantation and mortality each occur in 3%. Biallelic and digenic variants are associated with earlier onset and more severe biventricular involvement. Structural modeling confirms that pathogenic missense substitutions destabilize DSG2 architecture or impair calcium-dependent adhesion.</p><p><strong>Conclusions: </strong>This study refines the classification of DSG2 variants and highlights the importance of domain-level and multilocus interpretation in ACM. These findings support comprehensive genetic screening, structural modeling for variant assessment, and lifelong follow-up of DSG2 carriers to improve diagnosis and risk stratification.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146133502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A comparative analysis of infection and mortality in reassessing africa's COVID-19 dynamic using time-varying tests. 使用时变测试对重新评估非洲COVID-19动态中的感染和死亡率进行比较分析。
IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2026-02-06 DOI: 10.1038/s43856-025-01343-2
Stéphane Luchini, Constantin Pfauwadel, Patrick A Pintus, Michael Schwarzinger, Miriam Teschl

Background: It is commonly believed that Africa largely evaded the worst of the COVID-19 pandemic, with fewer cases than other continents. However, regional comparisons that ignore differences in testing intensity may misrepresent dynamics. Studying the spread and case-fatality relationship during COVID-19 across WHO regions requires explicitly adjusting for time-varying test volumes.

Methods: We build a weekly panel dataset spanning May 2020 to December 2021 for the WHO regions: Africa, Eastern Mediterranean, South-East Asia, the Americas, Western Pacific, and Europe. Data on tests, confirmed cases, and COVID-19-attributed deaths were sourced from Our World in Data. We apply a novel metric that corrects for fluctuating test volumes to quantify week-to-week acceleration in infections and in mortality. We then compare the frequency, magnitude, and timing of these acceleration episodes across regions.

Results: Accounting for testing dynamics, we show that Africa exhibits multiple infection-acceleration episodes whose magnitude and frequency match those in other regions. Mortality accelerations in Africa closely follow infection surges, with an average lag of ten weeks. A positive correlation between infection acceleration in Africa and the Americas further indicates synchrony. These findings hold when using a larger secondary dataset of 140 countries.

Conclusions: Contrary to prevailing assumptions, Africa was not spared from the pandemic's severe dynamics. Infection surges were on par with those elsewhere and were followed by mortality accelerations. These results underscore that accounting for testing variability is essential to accurately assess pandemic progression, and they highlight the urgent need to strengthen surveillance and healthcare capacity across all regions.

背景:人们普遍认为,非洲在很大程度上躲过了COVID-19大流行的最严重时期,病例数少于其他大陆。然而,忽略测试强度差异的区域比较可能会歪曲动态。在世卫组织各区域研究COVID-19期间的传播和病死率关系需要明确调整随时间变化的检测量。方法:我们为世卫组织区域:非洲、东地中海、东南亚、美洲、西太平洋和欧洲建立了一个从2020年5月到2021年12月的每周面板数据集。关于检测、确诊病例和covid -19导致的死亡的数据来自我们的数据世界。我们采用了一种新的度量标准,校正了波动的测试量,以量化每周感染和死亡率的加速。然后,我们比较了这些加速事件在不同地区的频率、强度和时间。结果:考虑到测试动态,我们表明非洲表现出多次感染加速事件,其幅度和频率与其他地区相同。非洲的死亡率加速与感染激增密切相关,平均滞后10周。非洲和美洲感染加速之间的正相关进一步表明了同步性。这些发现在使用140个国家的更大的二次数据集时成立。结论:与普遍的假设相反,非洲也未能幸免于这一大流行病的严重动态。感染激增与其他地方相当,随后是死亡率加速。这些结果强调,考虑检测变异性对于准确评估大流行进展至关重要,并强调迫切需要在所有地区加强监测和卫生保健能力。
{"title":"A comparative analysis of infection and mortality in reassessing africa's COVID-19 dynamic using time-varying tests.","authors":"Stéphane Luchini, Constantin Pfauwadel, Patrick A Pintus, Michael Schwarzinger, Miriam Teschl","doi":"10.1038/s43856-025-01343-2","DOIUrl":"10.1038/s43856-025-01343-2","url":null,"abstract":"<p><strong>Background: </strong>It is commonly believed that Africa largely evaded the worst of the COVID-19 pandemic, with fewer cases than other continents. However, regional comparisons that ignore differences in testing intensity may misrepresent dynamics. Studying the spread and case-fatality relationship during COVID-19 across WHO regions requires explicitly adjusting for time-varying test volumes.</p><p><strong>Methods: </strong>We build a weekly panel dataset spanning May 2020 to December 2021 for the WHO regions: Africa, Eastern Mediterranean, South-East Asia, the Americas, Western Pacific, and Europe. Data on tests, confirmed cases, and COVID-19-attributed deaths were sourced from Our World in Data. We apply a novel metric that corrects for fluctuating test volumes to quantify week-to-week acceleration in infections and in mortality. We then compare the frequency, magnitude, and timing of these acceleration episodes across regions.</p><p><strong>Results: </strong>Accounting for testing dynamics, we show that Africa exhibits multiple infection-acceleration episodes whose magnitude and frequency match those in other regions. Mortality accelerations in Africa closely follow infection surges, with an average lag of ten weeks. A positive correlation between infection acceleration in Africa and the Americas further indicates synchrony. These findings hold when using a larger secondary dataset of 140 countries.</p><p><strong>Conclusions: </strong>Contrary to prevailing assumptions, Africa was not spared from the pandemic's severe dynamics. Infection surges were on par with those elsewhere and were followed by mortality accelerations. These results underscore that accounting for testing variability is essential to accurately assess pandemic progression, and they highlight the urgent need to strengthen surveillance and healthcare capacity across all regions.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":" ","pages":"92"},"PeriodicalIF":5.4,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146133542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Communications medicine
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1