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Transcriptional Control of Lipid Metabolism. 脂质代谢的转录控制
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-24 DOI: 10.1007/5584_2024_808
Laura Palanker Musselman, Huy G Truong, Justin R DiAngelo

Transcriptional control of lipid metabolism uses a framework that parallels the control of lipid metabolism at the protein or enzyme level, via feedback and feed-forward mechanisms. Increasing the substrates for an enzyme often increases enzyme gene expression, for example. A paucity of product can likewise potentiate transcription or stability of the mRNA encoding the enzyme or enzymes needed to produce it. In addition, changes in second messengers or cellular energy charge can act as on/off switches for transcriptional regulators to control transcript (and protein) abundance. Insects use a wide range of DNA-binding transcription factors (TFs) that sense changes in the cell and its environment to produce the appropriate change in transcription at gene promoters. These TFs work together with histones, spliceosomes, and additional RNA processing factors to ultimately regulate lipid metabolism. In this chapter, we will first focus on the important TFs that control lipid metabolism in insects. Next, we will describe non-TF regulators of insect lipid metabolism such as enzymes that modify acetylation and methylation status, transcriptional coactivators, splicing factors, and microRNAs. To conclude, we consider future goals for studying the mechanisms underlying the control of lipid metabolism in insects.

通过反馈和前馈机制,脂质代谢的转录控制所采用的框架与蛋白质或酶水平上的脂质代谢控制相似。例如,增加酶的底物往往会增加酶基因的表达。产品的缺乏同样会增强编码酶或产生酶所需的酶的 mRNA 的转录或稳定性。此外,第二信使或细胞能量电荷的变化可以作为转录调节因子的开关,控制转录本(和蛋白质)的丰度。昆虫使用多种与 DNA 结合的转录因子(TFs)来感知细胞及其环境的变化,从而在基因启动子上产生适当的转录变化。这些转录因子与组蛋白、剪接体和其他 RNA 处理因子共同作用,最终调节脂质代谢。在本章中,我们将首先重点介绍控制昆虫脂质代谢的重要 TFs。接下来,我们将介绍昆虫脂质代谢的非 TF 调节因子,如改变乙酰化和甲基化状态的酶、转录辅激活因子、剪接因子和 microRNA。最后,我们将探讨研究昆虫脂质代谢控制机制的未来目标。
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引用次数: 0
Endocrine Control of Lipid Metabolism. 脂质代谢的内分泌控制
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-24 DOI: 10.1007/5584_2024_807
Natraj Krishnan

Lipids are essential in insects and play pleiotropic roles in energy storage, serving as a fuel for energy-driven processes such as reproduction, growth, development, locomotion, flight, starvation response, and diapause induction, maintenance, and termination. Lipids also play fundamental roles in signal transduction, hormone synthesis, forming components of the cell membrane, and thus are essential for maintenance of normal life functions. In insects, the neuroendocrine system serves as a master regulator of most life activities, including growth and development. It is thus important to pay particular attention to the regulation of lipid metabolism through the endocrine system, especially when considering the involvement of peptide hormones in the processes of lipogenesis and lipolysis. In insects, there are several lipogenic and lipolytic hormones that are involved in lipid metabolism such as insulin-like peptides (ILPs), adipokinetic hormone (AKH), 20-hydroxyecdysone (20-HE), juvenile hormone (JH), and serotonin. Other neuropeptides such as diapause hormone-pheromone biosynthesis activating neuropeptide (DH-PBAN), CCHamide-2, short neuropeptide F, and the cytokines Unpaired 1 and 2 may play a role in inducing lipogenesis. On the other hand, neuropeptides such as neuropeptide F, allatostatin-A, corazonin, leukokinin, tachykinins, limostatins, and insulin-like growth factor (ILP6) stimulate lipolysis. This chapter briefly discusses the current knowledge of the endocrine regulation of lipid metabolism in insects that could be utilized to reveal differences between insects and mammalian lipid metabolism which may help understand human diseases associated with dysregulation of lipid metabolism. Physiological similarities of insects to mammals make them valuable model systems for studying human diseases characterized by disrupted lipid metabolism, including conditions like diabetes, obesity, arteriosclerosis, and various metabolic syndromes.

脂质是昆虫体内必不可少的物质,在能量储存方面发挥着多方面的作用,是繁殖、生长、发育、运动、飞行、饥饿反应以及休眠诱导、维持和终止等能量驱动过程的燃料。脂质还在信号转导、激素合成、形成细胞膜成分等方面发挥着基本作用,因此是维持正常生命功能所必需的。在昆虫中,神经内分泌系统是包括生长和发育在内的大多数生命活动的主调节器。因此,必须特别关注通过内分泌系统对脂质代谢的调节,尤其是在考虑肽类激素参与脂肪生成和脂肪分解过程时。在昆虫中,有几种生脂激素和脂肪分解激素参与脂质代谢,如胰岛素样肽(ILPs)、促脂肪激素(AKH)、20-羟基蜕皮激素(20-HE)、幼年激素(JH)和血清素。其他神经肽,如休眠激素-信息素生物合成激活神经肽(DH-PBAN)、CCHamide-2、短神经肽 F 和细胞因子 Unpaired 1 和 2 可能在诱导脂肪生成方面发挥作用。另一方面,神经肽(如神经肽 F、动情素-A、花冠素、白激素、速激肽、肢端肽和胰岛素样生长因子(ILP6))可刺激脂肪分解。本章简要讨论了目前有关昆虫脂质代谢内分泌调控的知识,这些知识可用于揭示昆虫与哺乳动物脂质代谢之间的差异,从而有助于了解与脂质代谢失调有关的人类疾病。昆虫与哺乳动物在生理上的相似性使它们成为研究以脂质代谢紊乱为特征的人类疾病(包括糖尿病、肥胖症、动脉硬化和各种代谢综合征)的宝贵模型系统。
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引用次数: 0
Correction to: Antifungal Stewardship in Invasive Fungal Infections, a Systematic Review. 更正:侵袭性真菌感染中的抗真菌管理,系统性综述》(Antifungal Stewardship in Invasive Fungal Infections, a Systematic Review)。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-14 DOI: 10.1007/5584_2024_800
Cataldo Procacci, Luisa Marras, Leonarda Maurmo, Grazia Vivanet, Luca Scalone, Giacomo Bertolino
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引用次数: 0
Exploring the Metabolic Response of Pseudomonas putida to L-arginine. 探索假单胞菌对 L-精氨酸的代谢反应
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-02 DOI: 10.1007/5584_2024_797
Chiara Scribani-Rossi, María Antonia Molina-Henares, Manuel Espinosa-Urgel, Serena Rinaldo

Beyond their role as protein-building units, amino acids are modulators of multiple behaviours in different microorganisms. In the root-colonizing beneficial bacterium Pseudomonas putida (recently proposed to be reclassified as alloputida) KT2440, current evidence suggests that arginine functions both as a metabolic indicator and as an environmental signal molecule, modulating processes such as chemotactic responses, siderophore-mediated iron uptake or the levels of the intracellular second messenger cyclic diguanylate (c-di-GMP). Using microcalorimetry and extracellular flux analysis, in this work we have studied the metabolic adaptation of P. putida KT2440 to the presence of L-arginine in the growth medium, and the influence of mutations related to arginine metabolism. Arginine causes rapid changes in the respiratory activity of P. putida, particularly magnified in a mutant lacking the transcriptional regulator ArgR. The metabolic activity of mutants affected in arginine transport and metabolism is also altered during biofilm formation in the presence of the amino acid. The results obtained here further support the role of arginine as a metabolic signal in P. putida and the relevance of ArgR in the adaptation to the amino acid. They also serve as proof of concept on the use of calorimetric and extracellular flux techniques to analyse metabolic responses in bacteria and the impact of different mutant backgrounds on such responses.

除了作为蛋白质构成单位的作用外,氨基酸还是不同微生物多种行为的调节剂。在根系定殖有益细菌普氏假单胞菌(Pseudomonas putida)(最近被建议重新归类为alloputida)KT2440 中,目前的证据表明精氨酸既是一种代谢指标,也是一种环境信号分子,可调节趋化反应、苷元介导的铁吸收或细胞内第二信使环二聚体(c-di-GMP)水平等过程。在这项工作中,我们使用微量热仪和细胞外通量分析,研究了 P. putida KT2440 对生长介质中 L-精氨酸存在的代谢适应性,以及与精氨酸代谢相关的突变的影响。精氨酸会导致 P. putida 呼吸活性的快速变化,尤其是在缺乏转录调节因子 ArgR 的突变体中。精氨酸转运和代谢受影响的突变体的代谢活动也会在有该氨基酸存在的生物膜形成过程中发生改变。这些结果进一步证实了精氨酸在 P. putida 中作为代谢信号的作用,以及 ArgR 在适应该氨基酸过程中的相关性。这些结果还证明了使用热量测定和细胞外通量技术分析细菌代谢反应以及不同突变背景对这种反应的影响的概念。
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引用次数: 0
Antifungal Stewardship in Invasive Fungal Infections, a Systematic Review. 侵袭性真菌感染中的抗真菌管理,系统综述。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-10 DOI: 10.1007/5584_2024_798
Cataldo Procacci, Luisa Marras, Leonarda Maurmo, Grazia Vivanet, Luca Scalone, Giacomo Bertolino

Introduction: Invasive fungal infections (IFI) are a group of life-threatening diseases associated with significant morbidity, mortality and high healthcare costs. Some modern management programs known as AFS (antifungal stewardship programs) have now been developed. The purpose of this systematic review is to evaluate the different declinations of antifungal stewardship programs (AFPs).

Methods: Articles were systematically reviewed using the PRISMA checklist 2020. EMBASE and MEDLINE/PubMED were searched using the term "antifungal stewardship" (2012-2022 data) on 2 January 2023. Eligible studies were those that described an AFS and included an intervention, performance evaluation and outcome measures.

Results: A total of 22/796 studies were included. Approximately two-thirds (16) were published between 2018 and 2022. 16 (72.7%) stated a minimal complete AFS team. 12 (54.5%) adopted a non-compulsory AFS approach, 6(27.3%) had an Educational AFS and 4(18.2%) a compulsory AFS. Cost analyses of 12 studies showed a decrease for 7 (31.8%) compared to an increase for 5 (22.7%). In terms of outcomes, 18 studies showed a lower (10;45.5%) or the same (8;36.4%) pre-post intervention mortality rate.

Conclusion: AFS programs seem to be related to lower costs and better outcomes and should thus be implemented in tandem with antimicrobial stewardship programs.

导言:侵袭性真菌感染(IFI)是一组威胁生命的疾病,具有显著的发病率、死亡率和高昂的医疗费用。目前,一些被称为 AFS(抗真菌管理计划)的现代管理计划已经开发出来。本系统性综述旨在评估抗真菌管理计划(AFPs)的不同衰减情况:方法:采用 2020 年 PRISMA 检查表对文章进行系统性综述。于 2023 年 1 月 2 日使用 "抗真菌管理 "一词(2012-2022 年数据)检索 EMBASE 和 MEDLINE/PubMED。符合条件的研究是那些描述了 AFS 并包括干预措施、绩效评估和结果测量的研究:结果:共纳入 22/796 项研究。约三分之二(16 项)的研究发表于 2018 年至 2022 年之间。16项(72.7%)阐述了一个最基本完整的AFS团队。12项(54.5%)采用非强制AFS方法,6项(27.3%)采用教育AFS,4项(18.2%)采用强制AFS。12 项研究的成本分析表明,7 项研究(31.8%)的成本有所下降,而 5 项研究(22.7%)的成本有所上升。在结果方面,18 项研究显示干预前死亡率降低(10;45.5%)或相同(8;36.4%):AFS计划似乎与降低成本和改善疗效有关,因此应与抗菌药物管理计划同时实施。
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引用次数: 0
Thermal Stress and Nuclear Transport. 热应力与核传输
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-4584-5_5
Shingo Kose, Yutaka Ogawa, Naoko Imamoto

Nuclear transport is the basis for the biological reaction of eukaryotic cells, as it is essential to coordinate nuclear and cytoplasmic events separated by nuclear envelope. Although we currently understand the basic molecular mechanisms of nuclear transport in detail, many unexplored areas remain. For example, it is believed that the regulations and biological functions of the nuclear transport receptors (NTRs) highlights the significance of the transport pathways in physiological contexts. However, physiological significance of multiple parallel transport pathways consisting of more than 20 NTRs is still poorly understood, because our knowledge of each pathway, regarding their substrate information or how they are differently regulated, is still limited. In this report, we describe studies showing how nuclear transport systems in general are affected by temperature rises, namely, thermal stress or heat stress. We will then focus on Importin α family members and unique transport factor Hikeshi, because these two NTRs are affected in heat stress. Our present review will provide an additional view to point out the importance of diversity of the nuclear transport pathways in eukaryotic cells.

核运输是真核细胞生物反应的基础,因为它对于协调被核包膜隔开的细胞核和细胞质事件至关重要。尽管我们目前已经详细了解了核转运的基本分子机制,但仍有许多领域尚待探索。例如,人们认为核转运受体(NTR)的调控和生物功能突出了转运途径在生理环境中的重要性。然而,我们对由 20 多种 NTR 组成的多种平行转运途径的生理意义仍然知之甚少,因为我们对每种途径的底物信息或它们如何受到不同调控的了解仍然有限。在本报告中,我们将介绍有关核转运系统如何受到温度升高(即热胁迫或热应力)影响的研究。然后,我们将重点关注导入素α家族成员和独特的转运因子Hikeshi,因为这两种NTR在热应激中会受到影响。我们的综述将从另一个角度指出真核细胞中核转运途径多样性的重要性。
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引用次数: 0
The Gene Rearrangement and Transcriptional Regulation of Non B Cell-Derived Immunoglobulin. 非 B 细胞衍生免疫球蛋白的基因重排和转录调控。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-0511-5_4
Teng Ma, Jie Zheng, Peng Hao, Xiaohui Zhu, Xinmei Huang

Traditionally, immunoglobulin (Ig) expression has been attributed solely to B cells/plasma cells with well-documented and accepted regulatory mechanisms governing Ig expression in B cells. Ig transcription is tightly controlled by a series of transcription factors. However, increasing evidence has recently demonstrated that Ig is not only produced by B cell lineages but also by various types of non-B cells (non-B-Ig). Under physiological conditions, non-B-Ig not only exhibits antibody activity but also regulates cellular biological activities (such as promoting cell proliferation, adhesion, and cytoskeleton protein activity). In pathological conditions, non-B-Ig is implicated in the development of various diseases including tumour, kidney disease, and other immune-related disorders. The mechanisms underline Ig gene rearrangement and transcriptional regulation of Ig genes in non-B cells are not fully understood. However, existing evidence suggests that these mechanisms in non-B cells differ from those in B cells. For instance, non-B-Ig gene rearrangement occurs in an RAG-independent manner; and Oct-1 and Oct-4, rather than Oct-2, are required for the transcriptional regulation of non-B derived Igs. In this chapter, we will describe and compare the mechanisms of gene rearrangement and expression regulation between B-Ig and non-B-Ig.

传统上,免疫球蛋白(Ig)的表达只归因于 B 细胞/浆细胞,B 细胞中 Ig 的表达有据可查,并有公认的调节机制。Ig 的转录受到一系列转录因子的严格控制。然而,最近越来越多的证据表明,Ig 不仅由 B 细胞系产生,还由各种类型的非 B 细胞(非 B-Ig 细胞)产生。在生理条件下,非 B-Ig 不仅具有抗体活性,还能调节细胞生物活性(如促进细胞增殖、粘附和细胞骨架蛋白活性)。在病理情况下,非 B-Ig 与多种疾病的发生有关,包括肿瘤、肾病和其他免疫相关疾病。非 B 细胞中 Ig 基因重排和 Ig 基因转录调控的基本机制尚不完全清楚。不过,现有证据表明,非 B 细胞中的这些机制与 B 细胞中的不同。例如,非 B 细胞 Ig 基因重排是以不依赖 RAG 的方式发生的;非 B 细胞 Ig 的转录调控需要 Oct-1 和 Oct-4,而不是 Oct-2。在本章中,我们将描述并比较 B-Ig 和非 B-Ig 基因重排和表达调控的机制。
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引用次数: 0
Role of TRPA1 in Painful Cold Hypersensitivity. TRPA1 在痛性冷超敏反应中的作用
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-4584-5_17
Takayuki Nakagawa, Shuji Kaneko

Transient receptor potential ankyrin 1 (TRPA1) is a polymodal cation channel that plays a pivotal role in pain generation after exposure to irritant chemicals and is involved in the sensation of a wide variety of pathological pain. TRPA1 was first reported to be sensitive to noxious cold, but its intrinsic cold sensitivity still remains under debate. To address this issue, we focused on cold hypersensitivity induced by oxaliplatin, a platinum-based chemotherapeutic drug, as a peculiar adverse symptom of acute peripheral neuropathy. We and other groups have shown that oxaliplatin enhances TRPA1 sensitivity to its chemical agonists and reactive oxygen species (ROS). Our in vitro and animal model studies revealed that oxaliplatin, or its metabolite oxalate, inhibits hydroxylation of a proline residue within the N-terminus of human TRPA1 (hTRPA1) via inhibition of prolyl hydroxylase domain-containing protein (PHD), which induces TRPA1 sensitization to ROS. Although hTRPA1 is insensitive to cold, PHD inhibition endows hTRPA1 with cold sensitivity through sensing the small amount of ROS produced after exposure to cold. Hence, we propose that PHD inhibition can unveil the cold sensitivity of hTRPA1 by converting ROS signaling into cold sensitivity. Furthermore, in this review, we summarize the role of TRPA1 in painful cold hypersensitivity during peripheral vascular impairment.

瞬时受体电位碱1(TRPA1)是一种多模式阳离子通道,在接触刺激性化学物质后产生疼痛的过程中起着关键作用,并参与多种病理性疼痛的感觉。TRPA1 最早被报道对有害的冷敏感,但其内在的冷敏感性仍存在争议。为了解决这个问题,我们重点研究了奥沙利铂(一种铂类化疗药物)诱发的冷过敏症,这是急性周围神经病变的一种特殊不良症状。我们和其他研究小组已经证明,奥沙利铂会增强 TRPA1 对其化学激动剂和活性氧(ROS)的敏感性。我们的体外和动物模型研究发现,奥沙利铂或其代谢物草酸盐可通过抑制含脯氨酰羟化酶结构域的蛋白(PHD),抑制人 TRPA1(hTRPA1)N 端脯氨酸残基的羟化,从而诱导 TRPA1 对 ROS 敏感。虽然 hTRPA1 对寒冷不敏感,但 PHD 抑制通过感知暴露于寒冷后产生的少量 ROS,赋予了 hTRPA1 对寒冷的敏感性。因此,我们认为 PHD 抑制可以通过将 ROS 信号转导为冷敏感性来揭示 hTRPA1 的冷敏感性。此外,在这篇综述中,我们还总结了 TRPA1 在外周血管受损时的痛性冷过敏中的作用。
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引用次数: 0
Electroconvulsive Therapy (ECT) in Major Depression: Oldies but Goodies. 重度抑郁症的电休克疗法(ECT):老而弥坚。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-4402-2_10
Je-Yeon Yun, Yong-Ku Kim

Electroconvulsive therapy is one of the useful treatment methods for symptom improvement and remission in patients with treatment-resistant depression. Considering the various clinical characteristics of patients experiencing depression, key indicators are extracted from structural brain magnetic resonance imaging, functional brain magnetic resonance imaging, and electroencephalography (EEG) data taken before treatment, and applied as explanatory variables in machine learning and network analysis. Studies that attempt to make reliable predictions about the degree of response to electroconvulsive treatment and the possibility of remission in patients with treatment-resistant depression are continuously being published. In addition, studies are being conducted to identify the correlation with clinical improvement by taking structural-functional brain magnetic resonance imaging after electroconvulsive therapy in depressed patients. By reviewing and integrating the results of the latest studies on the above matters, we aim to present the usefulness of electroconvulsive therapy for improving the personalized prognosis of patients with treatment-resistant depression.

电休克疗法是改善和缓解耐药抑郁症患者症状的有效治疗方法之一。考虑到抑郁症患者的各种临床特征,从治疗前的脑结构磁共振成像、脑功能磁共振成像和脑电图(EEG)数据中提取关键指标,并将其作为解释变量应用于机器学习和网络分析。不断有研究发表,试图对电休克治疗的反应程度和耐药抑郁症患者病情缓解的可能性做出可靠的预测。此外,通过对抑郁症患者进行电休克治疗后的脑结构功能磁共振成像,确定与临床改善的相关性的研究也在进行中。通过回顾和整合有关上述问题的最新研究成果,我们旨在介绍电休克疗法在改善耐药抑郁症患者个性化预后方面的作用。
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引用次数: 0
Cognitive Behavioral Therapy and Mindfulness-Based Cognitive Therapy for Depressive Disorders: Enhancing Access and Tailoring Interventions in Diverse Settings. 治疗抑郁障碍的认知行为疗法和正念认知疗法:在不同的环境中提高干预的可及性和针对性。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-4402-2_11
Marie Drüge, Lisa Guthardt, Elisa Haller, Johannes Michalak, Jennifer Apolinário-Hagen

Depressive disorders are an enormous societal burden given their high prevalence and impact on all facets of being human (e.g., relationships, emotions, motivation). There is a variety of evidence-based psychological treatments, with cognitive behavioral therapy (CBT) being the gold standard for major depression. Research has shown that mindfulness-based interventions (MBIs) such as mindfulness-based cognitive therapy (MBCT) are an effective relapse prevention and treatment for depression and that MBIs can be integrated in individual therapy. Furthermore, various delivery modes (e.g., digital-delivered therapy) and settings are offered to best meet different needs and improve accessibility: Evidence suggests that therapist-guided digital CBT, blended therapy, and, to some degree, digitalized MBIs may be an efficacious supplement to traditional face-to-face therapy. This chapter provides an overview of the principles and evidence base for CBT and MBCT as well as different delivery modes for depressive disorders in adults. Finally, chances and challenges of integration are discussed as implications for practice, as well as recommendations and ideas for future research.

抑郁症发病率高,对人的各个方面(如人际关系、情绪、动机)都有影响,因此是一种巨大的社会负担。目前有多种循证心理治疗方法,其中认知行为疗法(CBT)是治疗重度抑郁症的黄金标准。研究表明,正念认知疗法(MBCT)等正念干预(MBIs)是一种有效的预防复发和治疗抑郁症的方法,而且正念干预可以与个体治疗相结合。此外,为了最大限度地满足不同需求并提高可及性,还提供了各种实施模式(如数字交付疗法)和环境:有证据表明,治疗师指导下的数字化 CBT、混合疗法,以及在某种程度上的数字化 MBI,可能是对传统面对面疗法的有效补充。本章概述了针对成人抑郁障碍的 CBT 和 MBCT 以及不同治疗模式的原理和证据基础。最后,讨论了整合的机会和挑战对实践的影响,以及对未来研究的建议和想法。
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引用次数: 0
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