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Probing Protein Complexes Composition, Stoichiometry, and Interactions by Peptide-Based Mass Spectrometry. 用基于肽的质谱法探测蛋白质复合物的组成、化学计量和相互作用。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-52193-5_4
Gianluca Degliesposti

The characterization of a protein complex by mass spectrometry can be conducted at different levels. Initial steps regard the qualitative composition of the complex and subunit identification. After that, quantitative information such as stoichiometric ratios and copy numbers for each subunit in a complex or super-complex is acquired. Peptide-based LC-MS/MS offers a wide number of methods and protocols for the characterization of protein complexes. This chapter concentrates on the applications of peptide-based LC-MS/MS for the qualitative, quantitative, and structural characterization of protein complexes focusing on subunit identification, determination of stoichiometric ratio and number of subunits per complex as well as on cross-linking mass spectrometry and hydrogen/deuterium exchange as methods for the structural investigation of the biological assemblies.

利用质谱分析蛋白质复合物的特征可以在不同层次上进行。最初的步骤涉及复合物的定性组成和亚基鉴定。然后,获取定量信息,如复合物或超复合物中每个亚基的化学计量比和拷贝数。基于肽的 LC-MS/MS 为蛋白质复合物的表征提供了多种方法和方案。本章主要介绍基于肽的 LC-MS/MS 在蛋白质复合物的定性、定量和结构表征方面的应用,重点是亚基鉴定、确定每个复合物中亚基的化学计量比和数量,以及交联质谱法和氢/氘交换法作为生物组装体结构研究的方法。
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引用次数: 0
Nonprescription Treatment Options. 非处方治疗方案。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-54513-9_14
Taylor Edwards, Kayla Felix, Sandy Francois, Leah Cardwell, Zakiyyah Rice

The pathogenesis of atopic dermatitis (AD) is complex and multifactorial. However, recent advancements in the genetics and pathophysiology of AD suggest that epidermal barrier dysfunction is paramount in the development and progression of the condition (Boguniewicz M, Leung DYM, Immunol Rev 242(1):233-246, 2011). In addition to standard therapy for AD, there are a plethora of nonprescription treatment modalities which may be employed. Over-the-counter treatments for atopic dermatitis can come in the form of topical corticosteroids, moisturizers/emollients, and oral antihistamines. Though these treatments are beneficial, prescription treatments may be quicker acting and more efficacious in patients with moderate to severe disease or during flares. OTC agents are best used for maintenance between flares and to prevent progression of mild disease. Alternative and complementary treatments lack strong efficacy evidence. However, wet wraps, bleach baths, and other treatments appear to be promising when used in conjunction with conventional treatments. With the financial burden of atopic dermatitis ranging from 364 million to 3.8 billion dollars each year in the United States, we suspect this topic will gain further research attention.

特应性皮炎(AD)的发病机制复杂且多因素。然而,最近在特应性皮炎的遗传学和病理生理学方面取得的进展表明,表皮屏障功能障碍在该病的发生和发展过程中起着至关重要的作用(Boguniewicz M、Leung DYM,Immunol Rev 242(1):233-246,2011)。除了针对过敏性皮炎的标准疗法外,还有大量非处方药治疗方法可供选择。特应性皮炎的非处方治疗包括外用皮质类固醇激素、保湿剂/润肤剂和口服抗组胺剂。虽然这些治疗方法有一定的疗效,但对于中重度患者或病情发作期的患者来说,处方治疗可能起效更快、疗效更好。非处方药物最适合在疾病发作期间用于维持治疗和预防轻度疾病的恶化。替代和补充疗法缺乏有力的疗效证据。不过,湿敷、漂白浴和其他疗法在与传统疗法结合使用时似乎很有前景。在美国,特应性皮炎每年造成的经济负担从 3.64 亿美元到 38 亿美元不等,因此我们认为这一课题将会得到更多研究的关注。
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引用次数: 0
Erythroid Krüppel-Like Factor (KLF1): A Surprisingly Versatile Regulator of Erythroid Differentiation. 红细胞克吕珀尔样因子(KLF1):令人惊讶的红细胞分化多功能调节因子
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-62731-6_10
James J Bieker, Sjaak Philipsen

Erythroid Krüppel-like factor (KLF1), first discovered in 1992, is an erythroid-restricted transcription factor (TF) that is essential for terminal differentiation of erythroid progenitors. At face value, KLF1 is a rather inconspicuous member of the 26-strong SP/KLF TF family. However, 30 years of research have revealed that KLF1 is a jack of all trades in the molecular control of erythropoiesis. Initially described as a one-trick pony required for high-level transcription of the adult HBB gene, we now know that it orchestrates the entire erythroid differentiation program. It does so not only as an activator but also as a repressor. In addition, KLF1 was the first TF shown to be directly involved in enhancer/promoter loop formation. KLF1 variants underlie a wide range of erythroid phenotypes in the human population, varying from very mild conditions such as hereditary persistence of fetal hemoglobin and the In(Lu) blood type in the case of haploinsufficiency, to much more serious non-spherocytic hemolytic anemias in the case of compound heterozygosity, to dominant congenital dyserythropoietic anemia type IV invariably caused by a de novo variant in a highly conserved amino acid in the KLF1 DNA-binding domain. In this chapter, we present an overview of the past and present of KLF1 research and discuss the significance of human KLF1 variants.

红细胞克鲁佩尔样因子(KLF1)于 1992 年首次被发现,它是一种红细胞限制性转录因子(TF),对红细胞祖细胞的末端分化至关重要。从表面上看,KLF1 在有 26 个成员的 SP/KLF TF 家族中并不起眼。然而,30 年的研究表明,KLF1 在红细胞生成的分子控制方面无所不能。最初,KLF1 被描述为成人 HBB 基因高水平转录所需的一匹小马,而现在我们知道它协调着整个红细胞分化程序。它不仅是激活剂,也是抑制剂。此外,KLF1 还是第一个被证明直接参与增强子/启动子环路形成的 TF。KLF1变体是人类红细胞表型的基础,其表现形式多种多样,既有非常轻微的情况,如胎儿血红蛋白的遗传性持久性和单倍体缺乏时的In(Lu)血型,也有更为严重的非血红蛋白血症、到更严重的非血红蛋白溶血性贫血(复合杂合子),再到显性先天性红细胞生成障碍性贫血(IV 型),这些病症无一例外都是由 KLF1 DNA 结合域中一个高度保守氨基酸的新变异引起的。在本章中,我们将概述 KLF1 研究的过去和现在,并讨论人类 KLF1 变异的意义。
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引用次数: 0
Non B Cell-Derived Immunoglobulins in Intestinal Tract. 肠道中的非 B 细胞衍生免疫球蛋白
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-981-97-0511-5_11
Zihan Geng, Lina Wu, Qianqian Wang, Junfan Ma, Zhan Shi

Intestinal epithelium constitutes a barrier to the unrestricted movement of pathogens, and other detrimental substances from the external world (gut lumen) into the interstitial environment. Intestinal epithelial cells obstruct harmful substances passing through the epithelium as a physical and chemical barrier; Moreover, the epithelial cells can express Toll-like receptors (TLRs) and cytokines to exert innate immune function. In addition, high levels of immunoglobulin A (IgA) and other antibodies exist in the intestinal mucosa, maintaining intestinal immune homeostasis in conjunction with intestinal probiotics. Traditionally, these antibodies have been deemed to be secreted by submucosal plasma cells. Nonetheless, in recent years, it has been demonstrated that intestinal epithelial cells produce a substantial amount of Igs, especially IgA or free Ig light chains, which are involved in intestinal immune homeostasis and the survival of normal epithelial cells. Furthermore, mounting evidence affirms that many human carcinoma cells, including colorectal cancer (CRC), can overexpress Igs, particularly IgG. Cancer-derived Igs exhibit a unique V(D)J rearrangement pattern distinct from B cell-derived Ig; moreover, this cancer cell-derived IgG also has a unique sialic acid modification on the 162 site of CH1 domain (SIA-IgG). The SIA-IgG plays a crucial role in promoting cancer initiation, progression, metastasis, and tumour immune escape. Simultaneously, CRC cells can also express free Ig light chains, which promote colitis, colitis-associated colon carcinogenesis, and CRC progression. Therefore, Igs expressed by CRC cells could be a potential target for diagnosing and preventing the transformation of inflammation into cancer, as well as treating CRC.

肠上皮细胞是病原体和其他有害物质从外部世界(肠腔)无限制进入肠道间质环境的屏障。肠上皮细胞作为物理和化学屏障,阻碍有害物质通过上皮细胞;此外,上皮细胞还能表达 Toll 样受体(TLR)和细胞因子,发挥先天性免疫功能。此外,肠粘膜中还存在高水平的免疫球蛋白 A(IgA)和其他抗体,与肠道益生菌共同维持肠道免疫平衡。传统上,这些抗体被认为是由粘膜下浆细胞分泌的。然而,近年来的研究表明,肠道上皮细胞会产生大量的 Igs,尤其是 IgA 或游离 Ig 轻链,它们参与了肠道免疫平衡和正常上皮细胞的存活。此外,越来越多的证据证实,包括结肠直肠癌(CRC)在内的许多人类癌细胞都能过量表达 Igs,尤其是 IgG。癌症衍生的 Igs 表现出一种独特的 V(D)J 重排模式,与 B 细胞衍生的 Ig 截然不同;此外,这种癌症细胞衍生的 IgG 还在 CH1 结构域的 162 位点上具有独特的硅酸修饰(SIA-IgG)。SIA-IgG 在促进癌症的发生、发展、转移和肿瘤免疫逃逸方面起着至关重要的作用。同时,CRC 细胞也能表达游离 Ig 轻链,而游离 Ig 轻链能促进结肠炎、结肠炎相关结肠癌的发生和 CRC 的进展。因此,CRC 细胞表达的 Igs 可能是诊断和预防炎症转化为癌症以及治疗 CRC 的潜在靶点。
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引用次数: 0
Monocytic Phagocytes in the Immunopathogenesis of Cytokine Storm Syndromes. 细胞因子风暴综合征免疫发病机制中的单核吞噬细胞
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-59815-9_12
Pui Y Lee

Cytokine storm syndromes (CSSs) are caused by a dysregulated host immune response to an inciting systemic inflammatory trigger. This maladaptive and harmful immune response culminates in collateral damage to host tissues resulting in life-threatening multisystem organ failure. Knowledge of the various immune cells that contribute to CSS pathogenesis has improved dramatically in the past decade. Monocytes, dendritic cells, and macrophages, collective known as monocytic phagocytes, are well-positioned within the immune system hierarchy to make key contributions to the initiation, propagation, and amplification of the hyperinflammatory response in CSS. The plasticity of monocytic phagocytes also makes them prime candidates for mediating immunoregulatory and tissue-healing functions in patients who recover from cytokine storm-mediated immunopathology. Therefore, approaches to manipulate the myriad functions of monocytic phagocytes may improve the clinical outcome of CSS.

细胞因子风暴综合征(CSSs)是由于宿主对诱发系统性炎症的免疫反应失调引起的。这种不适应和有害的免疫反应最终会对宿主组织造成附带损害,导致危及生命的多系统器官衰竭。在过去十年中,人们对导致 CSS 发病的各种免疫细胞的认识有了显著提高。单核细胞、树突状细胞和巨噬细胞统称为单核吞噬细胞,它们在免疫系统的层次结构中处于重要位置,对 CSS 中高炎症反应的启动、传播和扩大做出了关键贡献。单核吞噬细胞的可塑性也使其成为从细胞因子风暴介导的免疫病理中恢复的患者中介导免疫调节和组织愈合功能的主要候选者。因此,操纵单核细胞吞噬细胞各种功能的方法可能会改善 CSS 的临床疗效。
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引用次数: 0
Murine Models of Secondary Cytokine Storm Syndromes. 继发性细胞因子风暴综合征的小鼠模型
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-59815-9_34
Ellen Brisse, Emely L Verweyen, Amber De Visscher, Christoph Kessel, Carine H Wouters, Patrick Matthys

Hemophagocytic lymphohistiocytosis (HLH) comprises a broad spectrum of life-threatening cytokine storm syndromes, classified into primary (genetic) or secondary (acquired) HLH. The latter occurs in a variety of medical conditions, including infections, malignancies, autoimmune and autoinflammatory diseases, acquired immunodeficiency, and metabolic disorders. Despite recent advances in the field, the pathogenesis of secondary HLH remains incompletely understood. Considering the heterogeneity of triggering factors and underlying diseases in secondary HLH, a large diversity of animal models has been developed to explore pivotal disease mechanisms. To date, over 20 animal models have been described that each recapitulates certain aspects of secondary HLH. This review provides a comprehensive overview of the existing models, highlighting relevant findings, discussing the involvement of different cell types and cytokines in disease development and progression, and considering points of interest toward future therapeutic strategies.

嗜血细胞淋巴组织细胞增生症(HLH)包括多种危及生命的细胞因子风暴综合征,分为原发性(遗传性)和继发性(获得性)HLH。后者发生于多种疾病,包括感染、恶性肿瘤、自身免疫和自身炎症性疾病、获得性免疫缺陷和代谢紊乱。尽管该领域最近取得了进展,但对继发性 HLH 的发病机制仍不完全清楚。考虑到继发性 HLH 的诱发因素和基础疾病的异质性,人们开发了大量不同的动物模型来探索关键的疾病机制。迄今为止,已描述了 20 多种动物模型,每种动物模型都再现了继发性 HLH 的某些方面。本综述对现有模型进行了全面概述,重点介绍了相关发现,讨论了不同细胞类型和细胞因子在疾病发生和发展过程中的参与,并对未来治疗策略的关注点进行了思考。
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引用次数: 0
Other Immunomodulatory Treatment for Cytokine Storm Syndromes. 细胞因子风暴综合征的其他免疫调节治疗。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-59815-9_40
Ezgi Deniz Batu, Seza Ozen

Cytokine storm syndromes (CSS) include different entities such as macrophage activation syndrome, primary and secondary hemophagocytic lymphohistiocytosis (HLH), and multisystem inflammatory syndrome in children (MIS-C) associated with COVID-19. An effective management strategy is critical in CSS. While biologics have become an essential part of CSS treatment, hematopoietic stem cell transplantation (HSCT) has changed the fate of primary HLH patients. This chapter will focus on the available alternative immunomodulatory therapies in CSS, which include corticosteroids, cyclosporine A, intravenous immunoglobulin, interleukin 18 binding protein, therapeutic plasmapheresis, HSCT, and mesenchymal stromal cell-based therapies.

细胞因子风暴综合征(CSS)包括不同的实体,如巨噬细胞活化综合征、原发性和继发性嗜血细胞淋巴组织细胞增多症(HLH)以及与 COVID-19 相关的儿童多系统炎症综合征(MIS-C)。有效的管理策略对 CSS 至关重要。生物制剂已成为CSS治疗的重要组成部分,而造血干细胞移植(HSCT)则改变了原发性HLH患者的命运。本章将重点介绍治疗CSS的其他免疫调节疗法,包括皮质类固醇、环孢素A、静脉注射免疫球蛋白、白细胞介素18结合蛋白、治疗性浆细胞分离、造血干细胞移植和间充质基质细胞疗法。
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引用次数: 0
Bacteria-Associated Cytokine Storm Syndrome. 细菌相关细胞因子风暴综合征
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-59815-9_19
Esraa M Eloseily, Randy Q Cron

While viruses are considered the most common infectious triggers for cytokine storm syndromes (CSS), a growing list of bacterial pathogens, particularly intracellular organisms, have been frequently reported to be associated with this syndrome. Both familial and sporadic cases of CSS are often precipitated by acute infections. It is also important to note that an underlying precipitating infection might not be clinically obvious as the CSS clinical picture can mimic an infectious process or an overwhelming septicemia. It is important to detect such an underlying treatable condition. In addition, infections can also be acquired during the course of CSS due to the concurrent immune suppression with treatment. Optimal CSS outcomes require treating bacterial infections when recognized.CSS should always be suspected in patients presenting with a sepsis-like or multi-organ dysfunction picture. There are many criteria proposed to diagnose CSS in general, with HLH-2004 being the most commonly used. Alternatively, criteria have been proposed for CSS occurring in specific underlying conditions such as systemic lupus erythematosus (SLE) or systemic juvenile idiopathic arthritis (sJIA). However, waiting for many of these criteria to be fulfilled could lead to significant delay in diagnosis, and the physician needs a high index of suspicion for CSS in critically ill febrile hospitalized patients in order to properly recognize the condition. Thus, there should be diagnostic equipoise between CSS and infections, including bacterial, in this population. In this chapter, we discuss the more common bacterial precipitants of CSS with many of the cases being discussed in the pediatric age group.

虽然病毒被认为是细胞因子风暴综合征(CSS)最常见的感染诱因,但越来越多的细菌病原体,尤其是细胞内生物体,也经常被报道与这种综合征有关。家族性和散发性 CSS 病例通常都是由急性感染诱发的。同样重要的是要注意,潜在的诱发感染在临床上可能并不明显,因为 CSS 的临床表现可以模仿感染过程或严重的败血症。发现这种潜在的可治疗疾病非常重要。此外,在 CSS 的治疗过程中,由于同时存在免疫抑制,也可能发生感染。如果患者出现类似败血症或多器官功能障碍的症状,就应该怀疑是否患有 CSS。一般来说,有许多诊断 CSS 的标准,其中 HLH-2004 是最常用的标准。此外,还有人提出了针对特定基础疾病的 CSS 诊断标准,如系统性红斑狼疮(SLE)或系统性幼年特发性关节炎(sJIA)。然而,等待这些标准中的许多标准得到满足可能会导致严重的诊断延误,而且医生需要高度怀疑重症发热住院病人患有 CSS,才能正确识别病情。因此,在这一人群中,CSS 和感染(包括细菌感染)之间应保持诊断平衡。在本章中,我们将讨论更常见的导致 CSS 的细菌性诱因,其中许多病例都是在儿科年龄组讨论的。
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引用次数: 0
Impact of the COVID-19 Pandemic on Teaching, Learning, Assessment, and Wellbeing in Higher Education. COVID-19 大流行对高等教育教学、学习、评估和福祉的影响。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-61943-4_17
Alessandro Siani

Lockdown restrictions and social distancing regulations enforced by governments worldwide to prevent COVID-19 transmission have caused momentous disruption to the global education sector. Educators and students across all institutions and levels had to suddenly adapt to a new reality where in-person teaching was replaced by hybrid or remote learning activities. This chapter aims to evaluate the impact of the pandemic on teaching, learning and assessment in higher education. It discusses the challenges presented by the shift to online teaching and the pedagogical strategies developed to foster student engagement and assess their progress in a remote learning setting. Moreover, this chapter explores the impact of the pandemic on wellbeing and mental health of students and academic staff. The last section draws on the lessons learned from the pandemic to identify areas of good practice that are likely to positively shape the post-pandemic higher education panorama.

世界各国政府为防止 COVID-19 传播而实施的封锁限制和社会隔离规定给全球教育领域带来了巨大的混乱。各机构和各年级的教育工作者和学生不得不突然适应新的现实,即面授教学被混合或远程学习活动所取代。本章旨在评估大流行病对高等教育教学、学习和评估的影响。本章讨论了向在线教学转变所带来的挑战,以及为促进学生参与和评估学生在远程学习环境中的进步而制定的教学策略。此外,本章还探讨了大流行病对学生和教职员工身心健康的影响。最后一节总结了从大流行病中汲取的经验教训,确定了有可能积极塑造大流行病后高等教育全景的良好实践领域。
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引用次数: 0
Addressing Chronic Conditions and Social Determinants of Health During the COVID-19 Pandemic. 在 COVID-19 大流行期间应对慢性疾病和健康的社会决定因素。
4区 医学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-61943-4_22
Hani Serag, Lima Ghulmi, Hanaa S Sallam, Monique Ferguson, Bushra Manakatt

Chronic conditions or diseases are defined as persistent conditions lasting ≥ 1 year requiring either ongoing medical attention or limiting daily living or both (Agency for Healthcare Research and Quality (AHRQ) in Programs: SHARE approach workshop, Agency for Healthcare Research and Quality (AHRQ) (2016) Programs: SHARE approach workshop 2016. https://www.ahrq.gov/professionals/education/curriculum-tools/shareddecisionmaking/workshop/index.html . Accessed 20 Jan 2017). Physical chronic conditions, including diabetes, hypertension, heart disease, arthritis, and stroke, are prevalent, especially in the older population. Over 90% of older adults have at least 1 and 77% have ≥ 2 chronic conditions (American Diabetes Association (ADA) in Statistics about diabetes, American Diabetes Association (ADA) (2023) Statistics about diabetes. https://diabetes.org/about-us/statistics/about-diabetes . Accessed 20 Apr 2023). Chronic conditions account for $4.1 trillion of the nation's annual healthcare expenditure (Centers for Disease Control and Prevention, National Center for Chronic Disease Prevention and Health Promotion in Health and economic costs of chronic conditions, Centers for Disease Control and Prevention, National Center for Chronic Disease Prevention and Health Promotion. Health and Economic Costs of Chronic Conditions (2022). https://www.cdc.gov/chronicdisease/about/costs/index.htm . Accessed 7 Jan 2023). There are marked disparities based on age, color, and income, with older people, people of color, and lower-income people having higher treatment costs or even lost wages in response to having chronic conditions. Chronic conditions are the on-the-top leading causes for death with diabetes being the top 7th in the USA in 2019 (Ferguson in Metabolic Syndrome Related Dis, Ferguson et al., Metab Syndr Relat Disord 21:177-187, 2023).

慢性状况或疾病的定义是持续时间≥1 年,需要持续医疗护理或限制日常生活或两者兼而有之的持续性状况(Agency for Healthcare Research and Quality (AHRQ) in Programs:SHARE approach workshop, Agency for Healthcare Research and Quality (AHRQ) (2016) Programs:https://www.ahrq.gov/professionals/education/curriculum-tools/shareddecisionmaking/workshop/index.html 。访问日期:2017 年 1 月 20 日)。包括糖尿病、高血压、心脏病、关节炎和中风在内的身体慢性疾病十分普遍,尤其是在老年人群中。超过 90% 的老年人至少患有 1 种慢性病,77% 的老年人患有≥ 2 种慢性病(美国糖尿病协会(ADA),载于《糖尿病统计数据》,美国糖尿病协会(ADA)(2023 年)《糖尿病统计数据》。https://diabetes.org/about-us/statistics/about-diabetes 。2023 年 4 月 20 日访问)。慢性病占全国每年医疗保健支出的 4.1 万亿美元(美国疾病控制和预防中心、国家慢性病预防和健康促进中心,《慢性病的健康和经济成本》,美国疾病控制和预防中心、国家慢性病预防和健康促进中心。慢性病的健康和经济成本(2022 年)。https://www.cdc.gov/chronicdisease/about/costs/index.htm 。2023 年 1 月 7 日访问)。在年龄、肤色和收入方面存在明显差异,老年人、有色人种和低收入人群因患有慢性疾病而需要支付更高的治疗费用,甚至失去工资。慢性病是导致死亡的最主要原因,其中糖尿病是 2019 年美国的第 7 大死亡原因(Ferguson in Metabolic Syndrome Related Dis,Ferguson 等人,Metab Syndr Relat Disord 21:177-187, 2023)。
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