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Encoding spatial tumour dynamics with Starfysh 用 Starfysh 对空间肿瘤动态进行编码
IF 78.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-11 DOI: 10.1038/s41568-024-00764-w
Siyu He
In this Tools of the Trade article, Siyu He describes the development of Starfysh, a computational toolbox that integrates histology of complex tissues in spatial transcriptomic data analysis to characterize cell states.
在这篇《贸易工具》(Tools of the Trade)文章中,何思宇介绍了Starfysh的开发情况,这是一个计算工具箱,可将复杂组织的组织学整合到空间转录组数据分析中,以描述细胞状态。
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引用次数: 0
Compressive stresses in cancer: characterization and implications for tumour progression and treatment 癌症中的压缩应力:特征描述及其对肿瘤进展和治疗的影响
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-10 DOI: 10.1038/s41568-024-00745-z
Julia A. Linke, Lance L. Munn, Rakesh K. Jain
Beyond their many well-established biological aberrations, solid tumours create an abnormal physical microenvironment that fuels cancer progression and confers treatment resistance. Mechanical forces impact tumours across a range of biological sizes and timescales, from rapid events at the molecular level involved in their sensing and transmission, to slower and larger-scale events, including clonal selection, epigenetic changes, cell invasion, metastasis and immune response. Owing to challenges with studying these dynamic stimuli in biological systems, the mechanistic understanding of the effects and pathways triggered by abnormally elevated mechanical forces remains elusive, despite clear correlations with cancer pathophysiology, aggressiveness and therapeutic resistance. In this Review, we examine the emerging and diverse roles of physical forces in solid tumours and provide a comprehensive framework for understanding solid stress mechanobiology. We first review the physiological importance of mechanical forces, especially compressive stresses, and discuss their defining characteristics, biological context and relative magnitudes. We then explain how abnormal compressive stresses emerge in tumours and describe the experimental challenges in investigating these mechanically induced processes. Finally, we discuss the clinical translation of mechanotherapeutics that alleviate solid stresses and their potential to synergize with chemotherapy, radiotherapy and immunotherapies. In this Review, Linke, Munn and Jain provide a framework for understanding solid stress mechanobiology, examine the emerging and diverse roles of elevated compressive stresses in solid tumours, and highlight the potential for targeting mechanical abnormalities in cancer.
除了许多公认的生物畸变外,实体瘤还会造成异常的物理微环境,从而助长癌症的发展并产生抗药性。机械力对肿瘤的影响跨越一系列生物大小和时间尺度,从涉及其感应和传递的分子水平的快速事件,到较慢和更大规模的事件,包括克隆选择、表观遗传变化、细胞侵袭、转移和免疫反应。由于在生物系统中研究这些动态刺激所面临的挑战,尽管与癌症的病理生理学、侵袭性和治疗耐受性有明显的相关性,但对异常升高的机械力所引发的效应和途径的机理理解仍然难以捉摸。在本综述中,我们将探讨物理力在实体瘤中新出现的各种作用,并为理解实体应力机械生物学提供一个全面的框架。我们首先回顾了机械力(尤其是压应力)的生理重要性,并讨论了它们的定义特征、生物学背景和相对大小。然后,我们解释了异常压应力是如何在肿瘤中出现的,并描述了研究这些机械诱导过程所面临的实验挑战。最后,我们讨论了缓解实体应力的机械治疗方法的临床转化及其与化疗、放疗和免疫疗法协同作用的潜力。
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引用次数: 0
Male melanoma comes of age 男性黑色素瘤进入成熟期
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-10 DOI: 10.1038/s41568-024-00766-8
Daniela Senft
In a recent study published in Cell, Chhabra et al. identify age- and sex-dependent changes in skin fibroblasts that drive melanoma aggressiveness, with aged male fibroblasts promoting a slow-cycling, invasive state and resistance to targeted therapy in melanoma cells.
在最近发表于《细胞》(Cell)杂志的一项研究中,Chhabra 等人发现了皮肤成纤维细胞中与年龄和性别相关的变化,这些变化驱动着黑色素瘤的侵袭性,其中年老的男性成纤维细胞会促进黑色素瘤细胞的慢循环、侵袭性状态和对靶向治疗的抵抗力。
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引用次数: 0
Cancer-induced systemic pre-conditioning of distant organs: building a niche for metastatic cells 癌症诱导的远处器官系统性预处理:为转移细胞建立生态位
IF 78.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-10 DOI: 10.1038/s41568-024-00752-0
Nicolas Rabas, Rute M. M. Ferreira, Stefania Di Blasio, Ilaria Malanchi

From their early genesis, tumour cells integrate with the surrounding normal cells to form an abnormal structure that is tightly integrated with the host organism via blood and lymphatic vessels and even neural associations. Using these connections, emerging cancers send a plethora of mediators that efficiently perturb the entire organism and induce changes in distant tissues. These perturbations serendipitously favour early metastatic establishment by promoting a more favourable tissue environment (niche) that supports the persistence of disseminated tumour cells within a foreign tissue. Because the establishment of early metastatic niches represents a key limiting step for metastasis, the creation of a more suitable pre-conditioned tissue strongly enhances metastatic success. In this Review, we provide an updated view of the mechanisms and mediators of primary tumours described so far that induce a pro-metastatic conditioning of distant organs, which favours early metastatic niche formation. We reflect on the nature of cancer-induced systemic conditioning, considering that non-cancer-dependent perturbations of tissue homeostasis are also able to trigger pro-metastatic conditioning. We argue that a more holistic view of the processes catalysing metastatic progression is needed to identify preventive or therapeutic opportunities.

肿瘤细胞在形成初期就与周围的正常细胞结合,形成一种异常结构,并通过血液和淋巴管甚至神经联系与宿主机体紧密结合。利用这些联系,新出现的癌症会发出大量介质,有效地扰乱整个机体,并诱发远处组织的变化。这些扰动通过促进更有利的组织环境(生态位),支持扩散的肿瘤细胞在外来组织中持续存在,从而偶然地有利于早期转移的建立。由于早期转移龛的建立是转移的关键限制步骤,因此创造更合适的预处理组织可大大提高转移的成功率。在这篇综述中,我们对迄今为止描述的原发性肿瘤诱导远处器官促转移调理的机制和介质进行了更新,这些机制和介质有利于早期转移龛的形成。考虑到非癌症依赖的组织稳态扰动也能引发促转移调节,我们对癌症诱导的系统调节的性质进行了反思。我们认为,需要对催化转移进展的过程有一个更全面的认识,以确定预防或治疗机会。
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引用次数: 0
Steering research on mRNA splicing in cancer towards clinical translation 引导癌症中 mRNA 剪接的研究向临床转化
IF 78.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-09 DOI: 10.1038/s41568-024-00750-2
Olga Anczukow, Frédéric H.-T. Allain, Brittany L. Angarola, Douglas L. Black, Angela N. Brooks, Chonghui Cheng, Ana Conesa, Edie I. Crosse, Eduardo Eyras, Ernesto Guccione, Sydney X. Lu, Karla M. Neugebauer, Priyanka Sehgal, Xiao Song, Zuzana Tothova, Juan Valcárcel, Kevin M. Weeks, Gene W. Yeo, Andrei Thomas-Tikhonenko

Splicing factors are affected by recurrent somatic mutations and copy number variations in several types of haematologic and solid malignancies, which is often seen as prima facie evidence that splicing aberrations can drive cancer initiation and progression. However, numerous spliceosome components also ‘moonlight’ in DNA repair and other cellular processes, making their precise role in cancer difficult to pinpoint. Still, few would deny that dysregulated mRNA splicing is a pervasive feature of most cancers. Correctly interpreting these molecular fingerprints can reveal novel tumour vulnerabilities and untapped therapeutic opportunities. Yet multiple technological challenges, lingering misconceptions, and outstanding questions hinder clinical translation. To start with, the general landscape of splicing aberrations in cancer is not well defined, due to limitations of short-read RNA sequencing not adept at resolving complete mRNA isoforms, as well as the shallow read depth inherent in long-read RNA-sequencing, especially at single-cell level. Although individual cancer-associated isoforms are known to contribute to cancer progression, widespread splicing alterations could be an equally important and, perhaps, more readily actionable feature of human cancers. This is to say that in addition to ‘repairing’ mis-spliced transcripts, possible therapeutic avenues include exacerbating splicing aberration with small-molecule spliceosome inhibitors, targeting recurrent splicing aberrations with synthetic lethal approaches, and training the immune system to recognize splicing-derived neoantigens.

在几种类型的血液和实体恶性肿瘤中,剪接因子受到反复发生的体细胞突变和拷贝数变异的影响,这通常被视为剪接畸变可驱动癌症发生和发展的初步证据。然而,许多剪接体成分也 "兼职 "参与 DNA 修复和其他细胞过程,因此它们在癌症中的确切作用难以确定。不过,几乎没有人会否认,mRNA剪接失调是大多数癌症的普遍特征。正确解读这些分子指纹可以揭示肿瘤的新弱点和尚未开发的治疗机会。然而,多种技术挑战、挥之不去的误解和悬而未决的问题阻碍了临床转化。首先,由于短读RNA测序不擅长解析完整的mRNA异构体,以及长读RNA测序固有的浅读深度,尤其是在单细胞水平,因此癌症中剪接畸变的总体情况还没有得到很好的界定。虽然已知个别癌症相关同工酶会导致癌症进展,但广泛的剪接改变可能是人类癌症的一个同样重要的特征,而且可能更容易采取行动。这就是说,除了 "修复 "错误剪接的转录本之外,可能的治疗途径还包括利用小分子剪接体抑制剂加剧剪接畸变,利用合成致死方法靶向复发性剪接畸变,以及训练免疫系统识别剪接衍生的新抗原。
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引用次数: 0
Four-pronged attack on PDAC 四管齐下打击 PDAC
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-08 DOI: 10.1038/s41568-024-00765-9
Gabrielle Brewer
Chibaya, DeMarco et al. investigated a combinatorial approach of delivering innate immune agonists and RAS pathway-targeted therapies to remodel the tumour microenvironment and improve PDAC drug response.
Chibaya、DeMarco等人研究了一种提供先天性免疫激动剂和RAS通路靶向疗法的组合方法,以重塑肿瘤微环境并改善PDAC的药物反应。
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引用次数: 0
Challenging the status quo to improve the translational potential of preclinical oncology studies 挑战现状,提高临床前肿瘤学研究的转化潜力
IF 78.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-07 DOI: 10.1038/s41568-024-00756-w
Kate Connor, Anna Golebiewska, Annette T. Byrne
The precision medicine era has precipitated inherent new challenges to the preclinical tumour biology field. Overall, continued poor clinical translatability of preclinical studies highlights the need to disrupt the status quo. Well-characterized models, ideally established in the orthotopic setting and, where feasible, treated with classical standard-of-care regimens, are mandated. In this Comment, Connor et al. discuss how the continued poor clinical translatability of preclinical studies highlights the need to mandate well-characterized models, ideally established in the orthotopic setting and, where feasible, treated with classical standard-of-care regimens.
精准医疗时代给临床前肿瘤生物学领域带来了固有的新挑战。总体而言,临床前研究的临床转化率仍然很低,这凸显了打破现状的必要性。必须建立特征明确的模型,最好是在正位环境中建立,并在可行的情况下采用经典的标准治疗方案进行治疗。在这篇评论中,Connor 等人讨论了临床前研究的临床转化率持续低下如何凸显了要求建立特征明确的模型的必要性,这些模型最好在原位环境中建立,并在可行的情况下采用经典的标准护理方案进行治疗。
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引用次数: 0
Protection against tumour formation 防止肿瘤形成
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-04 DOI: 10.1038/s41568-024-00762-y
Anna Dart
Ciwinska et al. asked whether natural tissue remodelling can drive mutant cell expansion and identified three protective mechanisms in the healthy mouse mammary gland that constrain the ability of mutant cells to transform and give rise to cancer.
Ciwinska 等人提出了自然组织重塑是否会驱动突变细胞扩张的问题,并确定了健康小鼠乳腺中的三种保护机制,这些机制限制了突变细胞转化和致癌的能力。
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引用次数: 0
Modelling and deciphering tumour metabolism in CRISPR screens. 在 CRISPR 筛选中模拟和解读肿瘤代谢。
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 DOI: 10.1038/s41568-024-00758-8
Johannes Zuber, Wilhelm Palm
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引用次数: 0
Macrophages and T cells in metabolic disorder-associated cancers 代谢紊乱相关癌症中的巨噬细胞和 T 细胞。
IF 72.5 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-10-01 DOI: 10.1038/s41568-024-00743-1
Daniel Taranto, Daan J. Kloosterman, Leila Akkari
Cancer and metabolic disorders have emerged as major global health challenges, reaching epidemic levels in recent decades. Often viewed as separate issues, metabolic disorders are shown by mounting evidence to heighten cancer risk and incidence. The intricacies underlying this connection are still being unraveled and encompass a complex interplay between metabolites, cancer cells and immune cells within the tumour microenvironment (TME). Here, we outline the interplay between metabolic and immune cell dysfunction in the context of three highly prevalent metabolic disorders, namely obesity; two associated liver diseases, metabolic dysfunction-associated steatotic liver disease (MASLD) and metabolic dysfunction-associated steatohepatitis (MASH); and type 2 diabetes. We focus primarily on macrophages and T cells, the critical roles of which in dictating inflammatory response and immune surveillance in metabolic disorder-associated cancers are widely reported. Moreover, considering the ever-increasing number of patients prescribed with metabolism disorder-altering drugs and diets in recent years, we discuss how these therapies modulate systemic and local immune phenotypes, consequently impacting cancer malignancy. Collectively, unraveling the determinants of metabolic disorder-associated immune landscape and their role in fuelling cancer malignancy will provide a framework essential to therapeutically address these highly prevalent diseases. Metabolic disorders, such as obesity, metabolic dysfunction-associated steatotic liver disease (MASLD), metabolic dysfunction-associated steatohepatitis (MASH) and type 2 diabetes, are increasingly recognized as significant contributors to cancer development. Here, Taranto, Kloosterman and Akkari explore the influence of metabolic disorders on tumour progression through the metabolic interactions of macrophages and T cells to alter immune function and cancer outcomes.
癌症和代谢紊乱已成为全球健康的主要挑战,近几十年来已达到流行病的程度。代谢紊乱通常被视为单独的问题,但越来越多的证据表明,代谢紊乱会增加癌症风险和发病率。这种联系背后错综复杂的关系仍在研究之中,包括肿瘤微环境(TME)中代谢物、癌细胞和免疫细胞之间复杂的相互作用。在此,我们概述了在三种高发代谢性疾病(即肥胖症、两种相关肝病--代谢功能障碍相关性脂肪性肝病(MASLD)和代谢功能障碍相关性脂肪性肝炎(MASH))以及 2 型糖尿病--的背景下,代谢和免疫细胞功能障碍之间的相互作用。我们主要关注巨噬细胞和 T 细胞,它们在代谢紊乱相关癌症的炎症反应和免疫监视中的关键作用已被广泛报道。此外,考虑到近年来越来越多的患者使用改变代谢紊乱的药物和饮食,我们将讨论这些疗法如何调节全身和局部免疫表型,从而影响癌症的恶性程度。总之,揭示代谢紊乱相关免疫表型的决定因素及其在助长癌症恶性发展中的作用,将为治疗这些高发疾病提供一个必不可少的框架。
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Energy & Environmental Science
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