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Ligand-based discovery of a novel GATA2 inhibitor targeting acute myeloid leukemia cells 一种靶向急性粒细胞白血病细胞的新型GATA2抑制剂的配体发现
Pub Date : 2022-10-05 DOI: 10.3389/fddsv.2022.1013229
J. Menendez-Gonzalez, K. Strange, Marcella Bassetto, A. Brancale, N. Rodrigues, S. Ferla
Despite major therapeutic advances leading to improved patient outcomes for other haematological malignancies, development of new therapeutics to improve prognosis for acute myeloid leukemia (AML) patients remains an area of unmet clinical need. Overexpression of GATA2, a member of the GATA family of zinc finger transcription factors, has been implicated in AML. In settings where GATA2 is overexpressed in human AML cells, K7174, a proteasome inhibitor that inhibits GATA2, induces apoptosis and enhances the killing activity of AML chemotherapeutics in vitro yet targeting the proteasome has been associated with high toxicity in the clinic. Using an in silico approach, we embarked on a screen to identify specific GATA2 inhibitors that will target AML cells independently of the proteasome. A shape-based virtual screening of an in-house library of small molecules was performed using a low-energy conformation of K7174. The virtual hit compounds were subsequently filtered according to their potential selectivity for GATA2 over the proteasome. From 15 selected compounds evaluated for their ability to kill AML cells in vitro, one compound, an asymmetrical substituted piperazine with Hepatitis C antiviral activity, exhibited superior ability to induce apoptosis and reduce cell cycling in AML cells without proteasome inhibition. This compound was also able to promote cell death of the relapse propagating leukemic stem cell (LSC) compartment while sparing Gata2 knockout LSCs, crucially demonstrating specificity to inhibit GATA2. We have identified a GATA2 specific inhibitor with promising capability to target AML cells in vitro, including LSCs that underpin poor prognosis in AML.
尽管其他血液系统恶性肿瘤的治疗取得了重大进展,改善了患者的预后,但开发新的治疗方法来改善急性髓细胞白血病(AML)患者的预后仍然是一个未满足临床需求的领域。锌指转录因子GATA家族成员GATA2的过度表达与AML有关。在人类AML细胞中GATA2过表达的环境中,K7174,一种抑制GATA2的蛋白酶体抑制剂,在体外诱导细胞凋亡并增强AML化疗药物的杀伤活性,但靶向蛋白酶体,在临床上与高毒性有关。使用计算机方法,我们开始筛选特异性GATA2抑制剂,该抑制剂将独立于蛋白酶体靶向AML细胞。使用K7174的低能构象对内部小分子文库进行基于形状的虚拟筛选。随后根据其对GATA2相对于蛋白酶体的潜在选择性过滤虚拟命中化合物。从15种在体外评估其杀死AML细胞能力的选定化合物中,一种化合物,一种具有丙型肝炎抗病毒活性的不对称取代哌嗪,在没有蛋白酶体抑制的情况下,在AML细胞中表现出诱导细胞凋亡和减少细胞周期的优异能力。该化合物还能够促进复发繁殖的白血病干细胞(LSC)区室的细胞死亡,同时保留Gata2敲除的LSC,关键地证明了抑制Gata2的特异性。我们已经确定了一种GATA2特异性抑制剂,它具有在体外靶向AML细胞的良好能力,包括支持AML不良预后的LSCs。
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引用次数: 0
How artificial intelligence enables modeling and simulation of biological networks to accelerate drug discovery 人工智能如何使生物网络建模和模拟加速药物发现
Pub Date : 2022-10-04 DOI: 10.3389/fddsv.2022.1019706
M. DiNuzzo
The pharmaceutical industry suffered a significant decline of innovation in the last few decades, whose simple reason is complex biology. Artificial intelligence (AI) promises to make the entire drug discovery and development process more efficient. Here I consider the potential benefits of using AI to deepen our mechanistic understanding of disease by leveraging data and knowledge for modeling and simulation of genome-scale biological networks. I outline recent developments that are moving the field forward and I identify several overarching challenges for advancing the state of the art towards the successful integration of AI with modeling and simulation in drug discovery.
制药行业在过去的几十年里遭受了创新的显著下降,其简单的原因是复杂的生物学。人工智能(AI)有望使整个药物发现和开发过程更加高效。在这里,我考虑了使用人工智能的潜在好处,通过利用数据和知识来建模和模拟基因组尺度的生物网络,加深我们对疾病的机制理解。我概述了推动该领域向前发展的最新发展,并确定了将人工智能与药物发现中的建模和仿真成功整合在一起的几个主要挑战。
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引用次数: 0
Integrating diverse layers of omic data to identify novel drug targets in Listeria monocytogenes 整合不同层次的组学数据以确定单核细胞增多性李斯特菌的新药物靶点
Pub Date : 2022-09-23 DOI: 10.3389/fddsv.2022.969415
Miranda C. Palumbo, E. Sosa, Florencia A Castello, Gustavo Schottlender, F. Serral, A. Turjanski, M. M. Palomino, D. F. Do Porto
Listeria monocytogenes (Lm) is a Gram-positive bacillus responsible for listeriosis in humans. Listeriosis has become a major foodborne illness in recent years. This illness is mainly associated with the consumption of contaminated food and ready-to-eat products. Recently, Lm has developed resistances to a broad range of antimicrobials, including those used as the first choice of therapy. Moreover, multidrug-resistant strains have been detected in clinical isolates and settings associated with food processing. This scenario punctuates the need for novel antimicrobials against Lm. On the other hand, increasingly available omics data for diverse pathogens has created new opportunities for rational drug discovery. Identification of an appropriate molecular target is currently accepted as a critical step of this process. In this work, we generated multiple layers of omics data related to Lm, aiming to prioritize proteins that could serve as attractive targets for antimicrobials against L. monocytogenes. We generated genomic, transcriptomic, metabolic, and protein structural information, and this data compendium was integrated onto a freely available web server (Target Pathogen). Thirty targets with desirable features from a drug development point of view were shortlisted. This set of target proteins participates in key metabolic processes such as fatty acid, pentose, rhamnose, and amino acids metabolism. Collectively, our results point towards novel targets for the control of Lm and related bacteria. We invite researchers working in the field of drug discovery to follow up experimentally on our revealed targets.
单核细胞增多性李斯特菌(Lm)是一种引起人类李斯特菌病的革兰氏阳性杆菌。李斯特菌病近年来已成为一种主要的食源性疾病。这种疾病主要与食用受污染的食品和即食产品有关。最近,Lm对多种抗菌药物产生了耐药性,包括那些作为首选治疗药物的抗菌药物。此外,在与食品加工相关的临床分离株和环境中检测到了耐多药菌株。这种情况强调了对Lm新型抗菌药物的需求。另一方面,越来越多的不同病原体的组学数据为合理的药物发现创造了新的机会。鉴定合适的分子靶标目前被认为是这一过程的关键步骤。在这项工作中,我们生成了与Lm相关的多层组学数据,旨在优先考虑可以作为抗单核细胞增多性李斯特菌的有吸引力的靶点的蛋白质。我们生成了基因组、转录组、代谢和蛋白质结构信息,这些数据汇编被集成到一个免费的网络服务器(目标病原体)上。从药物开发的角度来看,有30个具有理想特征的靶点入围。这组靶蛋白参与关键的代谢过程,如脂肪酸、戊糖、鼠李糖和氨基酸代谢。总之,我们的研究结果指向了控制Lm和相关细菌的新靶点。我们邀请在药物发现领域工作的研究人员对我们揭示的靶点进行实验跟踪。
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引用次数: 3
Effect of itraconazole on the safety and pharmacokinetics of antitumor SHR6390 伊曲康唑对抗肿瘤药物SHR6390的安全性及药代动力学的影响
Pub Date : 2022-09-09 DOI: 10.3389/fddsv.2022.963045
Junyan Wu, H. Yao, X. Lv, Suiwen Ye, Nan Zhang
The experimental drug SHR6390 has anti-tumor activity as a cyclin dependent kinase 4/6 inhibitor and is metabolized primarily by the cytochrome P450 3A4 enzyme. Therefore, The purpose of this trial was to evaluate the safety and pharmacokinetics of SHR6390, a potent cytochrome P450 3A4 inhibitor, in healthy Chinese subjects. In this trial study, 18 subjects received a single oral dose of SHR6390 50 mg on day 1, multiple doses of 200 mg itraconazole on days 12–24 for 13 days, and a single oral dose of SHR6390 50 mg on day 15. After coadministration with itraconazole, the maximum plasma concentration (Cmax) of SHR6390 increased by 70.7% (from 14.3 ng/ml to 24.5 ng/ml), and the area under the time curve from 0 to T (AUC0-T) increased by 110.8% from 468 h∙ng/mL to 988 h∙ng/mL. The area under the concentration-time curve extrapolated to ∞(AUC0-∞) increases from 509 H∙ng/mL to 1,040 h∙ng/mL, an increase of 105.1%. Oral gap (CL/F) decreased (47.9 L/h and 98.3 L/h) and apparent volume of distribution (Vz/F) decreased (4190 L and 5890 L). According to common terminology criteria, 15 32 adverse events were reported in 18 subjects (AEs) (27 SHR6390-related AEs and 15 Itraconazole-related AEs), AEs were all Class 1 adverse events. Overall, co-administration of Itraconazole increased the plasma exposure of SHR6390 in healthy subjects. Both SHR6390 alone and co-administration of Itraconazole showed acceptable safety profiles, which warrants further investigation. The experimental drug SHR-6390 of this clinical trial has been applied for registration, which is classified as Chemical drugs Class 1. The study drug SHR6390 registration number:ClinicalTrials.gov Identifier: NCT04423601 (https://clinicaltrials.gov/)
实验药物SHR6390作为细胞周期蛋白依赖性激酶4/6抑制剂具有抗肿瘤活性,并且主要由细胞色素P4503A4酶代谢。因此,本试验的目的是评估SHR6390(一种强效细胞色素P4503A4抑制剂)在健康中国受试者中的安全性和药代动力学。在本试验研究中,18名受试者在第1天接受了单次口服剂量的SHR6390 50 mg,在第12-24天接受了多次口服剂量的伊曲康唑,持续13天,在第15天接受了一次单次口服量的SHR639 50 mg。与伊曲康唑联合给药后,SHR6390的最大血药浓度(Cmax)增加了70.7%(从14.3 ng/ml增加到24.5 ng/ml),从0到T的时间曲线下面积(AUC0-T)增加了110.8%,从468 h∙ng/ml增加到988小时∙ng/ml。外推到∞的浓度-时间曲线下面积(AUC0-∞)从509 H∙ng/mL增加到1040 H∙g/mL,增加105.1%。口腔间隙(CL/F)减少(47.9 L/H和98.3 L/H),表观分布体积(Vz/F)减少(4190 L和5890 L)。根据通用术语标准,18名受试者(AE)中报告了1532例不良事件(27例SHR6390相关AE和15例伊曲康唑相关AE),AE均为1级不良事件。总体而言,伊曲康唑联合给药增加了健康受试者SHR6390的血浆暴露量。单独服用SHR6390和联合服用伊曲康唑均显示出可接受的安全性,值得进一步研究。本次临床试验的实验药物SHR-6390已申请注册,属化学药品1类。研究药物SHR6390注册号:ClinicalTrials.gov标识符:NCT04423601(https://clinicaltrials.gov/)
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引用次数: 0
Editorial: Development of COVID-19 therapies: Lessons learnt and ongoing efforts 社论:新冠肺炎疗法的发展:经验教训和持续努力
Pub Date : 2022-09-08 DOI: 10.3389/fddsv.2022.1019705
B. Villoutreix, C. Cavasotto, J. Fernández-Recio
INSERM Unit 1141, Hospital Robert Debré, University of Paris, Paris, France, Computational Drug Design and Biomedical Informatics Laboratory, Instituto de Investigaciones en Medicina Traslacional (IIMT), Universidad Austral-CONICET, Pilar, Argentina, Facultad de Ciencias Biomédicasand Facultad de Ingeniería, Universidad Austral, Pilar, Argentina, Austral Institute for Applied Artificial Intelligence, Universidad Austral, Pilar, Argentina, Institute of Vine and Wine Sciences, Spanish National Research Council (CSIC), Logroño, Spain
INSERM 1141单元,罗伯特·德布雷医院,巴黎大学,巴黎,法国,计算药物设计和生物医学信息实验室,转化医学研究所,南方大学-CONICET,皮拉尔,阿根廷,生物医学科学院和工程学院,南方大学,皮拉尔,阿根廷,南方应用人工智能研究所,南方大学,皮拉尔,阿根廷,葡萄藤和葡萄酒科学研究所,西班牙国家研究委员会),洛格罗尼奥,西班牙
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引用次数: 0
Bismuth subsalicylate as potential treatment for Covid-19 pneumonia: A case series report 次水杨酸铋作为Covid-19肺炎的潜在治疗方法:病例系列报告
Pub Date : 2022-08-31 DOI: 10.3389/fddsv.2022.962988
C. Kahlenborn, W. Severs, K. Nawab
Various literature cited suggests that bismuth may have usefulness against Covid-19 both in vitro and in vivo. During the course of caring for Covid-19 patients we administered bismuth subsalicylate to those who displayed diarrhea and/or gastric complaints. Using relatively conservative criteria, upon retrospective review, we noted marked improvement in oxygen requirements in most of the cases. This improvement was observed even when prior therapy with standard anti-Covid drugs had failed. Our overall impression is that these positive results support a detailed evaluation of bismuth as an adjunct treatment for the treatment of Covid-19.
引用的各种文献表明,铋在体外和体内都可能对Covid-19有用。在对Covid-19患者的护理过程中,我们对出现腹泻和/或胃部不适的患者给予了次水杨酸铋。使用相对保守的标准,经过回顾性审查,我们注意到大多数病例的氧气需求有明显改善。即使先前使用标准抗新冠药物治疗失败,也能观察到这种改善。我们的总体印象是,这些积极的结果支持对铋作为治疗Covid-19的辅助治疗进行详细评估。
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引用次数: 0
The challenges and opportunities for the development of COVID-19 therapeutics and preparing for the next pandemic 开发COVID-19治疗方法和为下一次大流行做准备的挑战和机遇
Pub Date : 2022-08-26 DOI: 10.3389/fddsv.2022.925825
E. Ogbadoyi, Ndagi Umar
The disease which is today known as COVID-19 is caused by severe acute respiratory. Syndrome coronavirus 2 (SARS-COV-2), was first reported in Wuhan, China in December 2019. The disease has claimed well over six million lives from over 500 million cases. Vaccine hesitancy militates against successful mass vaccination. There is the rapid emergence of new SARS-COV-2 variants, constituting a challenge to the effectiveness of vaccines. Moreover, none of the available vaccines offers 100% protection and even the protection offered is of short duration necessitating booster doses to be taken. Moving forward, the development of plant-based edible vaccines will be a remarkable strategic approach to overcome vaccine hesitancy and improve vaccine uptake. So far only about nine drugs for COVID-19 treatment have approvals by either or both the European Medicines Agency and the FDA. While drug repurposing to address the emerging need in the early period of the COVID-19 pandemic has been contextually very useful, investment in it remains relatively low for commercial reasons arising from patenting issues. Embarking on new drug discovery and development strategies targeting both the virus and host factors is a very appealing option. Targeting druggable targets that are present across viruses, particularly the coronaviruses, for drug discovery and development represents an important strategy for pandemic preparedness. Natural products are an important reservoir of chemical scaffolds with huge potential for the discovery of novel chemical entities for development of novel therapeutics. Phytopharming is an available technology that can be used for mass and accelerated production of therapeutic molecules that will be required within short periods of time as is the case in pandemic outbreaks. Nanotechnology provides excellent platforms for formulating multivalent vaccines and pan-viral medicines for the treatment of COVID-19. Taken together, this review discusses the potential for the development of therapeutics by using the tools of biocomputing, nanotechnology, and phytopharming for accelerated therapeutic development to achieve effective COVID-19 treatment and associated complications, including new and emerging variants of SARS-COV-2 and other viral pandemics that may emerge or re-emerge.
这种疾病今天被称为COVID-19,是由严重的急性呼吸系统疾病引起的。冠状病毒2型综合征(SARS-COV-2)于2019年12月在中国武汉首次报道。这种疾病已经夺去了5亿多病例中600多万人的生命。疫苗犹豫阻碍了大规模疫苗接种的成功。新的SARS-COV-2变种迅速出现,对疫苗的有效性构成挑战。此外,没有一种现有的疫苗能提供100%的保护,即使提供的保护也是短期的,因此需要服用加强剂。展望未来,开发以植物为基础的可食用疫苗将是克服疫苗犹豫和提高疫苗吸收率的重要战略途径。到目前为止,只有大约9种治疗COVID-19的药物获得了欧洲药品管理局和FDA的批准。虽然为解决COVID-19大流行早期新出现的需求而进行的药物再利用在背景上非常有用,但由于专利问题引起的商业原因,在这方面的投资仍然相对较低。着手开展针对病毒和宿主因素的新药发现和开发战略是一个非常有吸引力的选择。针对病毒(特别是冠状病毒)中存在的可药物靶点进行药物发现和开发,是防范大流行的一项重要战略。天然产物是化学支架的重要储存库,具有发现新化学实体、开发新疗法的巨大潜力。植物伤害是一种可用的技术,可用于大规模和加速生产短时间内所需的治疗性分子,例如在大流行爆发时。纳米技术为制定治疗COVID-19的多价疫苗和泛病毒药物提供了极好的平台。综上所述,本综述讨论了利用生物计算、纳米技术和植物伤害等工具开发治疗方法的潜力,以加速治疗方法的开发,以实现有效的COVID-19治疗和相关并发症,包括可能出现或再次出现的新出现的SARS-COV-2变体和其他病毒大流行。
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引用次数: 0
Current advances in our understanding of circular RNA (circRNA) in Alzheimer’s disease (AD); the potential utilization of synthetic circRNAs as a therapeutic strategy in the clinical management of AD 我们对阿尔茨海默病(AD)中环状RNA(circRNA)的理解的最新进展;合成circRNA在AD临床治疗中的潜在应用
Pub Date : 2022-08-24 DOI: 10.3389/fddsv.2022.983030
Yuhai Zhao, V. Jaber, W. Lukiw
mRNA-mediated gene expression appears to be signi cantly in AD and CNS, our understanding of con fi guration and composition of circRNA is these ssRNAs are highly can in pathophysiological for extended periods, and therapeutically can be designed and synthesized to carry multiple ssRNA-mediated regulatory signals. Based on these and other very recent fi ndings this Opinion ” paper will: 1) address our current understanding of the emerging role of circRNAs in neurodegeneration with special reference to AD; and 2) discuss the intriguing possibility of using synthetic circRNAs containing multiple inserted miRNA, (AM; antagomir), anti-mRNA and/or other sequences in tandem combination with a personalized as an innovative for the and
信使核糖核酸介导的基因表达似乎在AD和中枢神经系统中具有重要意义,我们对circRNA的结构和组成的理解是,这些ssRNA在较长时间内具有高度的病理生理活性,并且在治疗上可以设计和合成携带多种ssRNA介导的调节信号。基于这些和其他最近的发现,本意见“论文将:1)阐述我们目前对circRNA在神经退行性变中的新作用的理解,特别是对AD的理解;和2)讨论将含有多个插入的miRNA、(AM;antagomir)、抗-mRNA和/或其他序列的合成circRNA与个性化的创新药物串联使用的有趣可能性
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引用次数: 5
Modeling heart failure with preserved ejection fraction in rodents: Where do we stand? 用保留的射血分数模拟啮齿动物的心力衰竭:我们站在哪里?
Pub Date : 2022-08-11 DOI: 10.3389/fddsv.2022.948407
Chun Chou, M. Chin
Heart failure (HF) with preserved ejection fraction (HFpEF) is a clinical syndrome characterized by signs and symptoms of HF in the presence of a normal left ventricular systolic function. Over the past decade, HFpEF has become increasingly prevalent, accounting for greater than 50% of all clinical HF presentations. HFpEF is a complex disease with heterogeneous clinical presentations and multiple non-cardiac comorbidities, which frequently co-exist and contribute to its pathophysiology. To date, only a handful of therapies have been proven to improve, albeit marginally, the outcomes in HFpEF. The development of effective therapeutic agents is in part hampered by the lack of animal models that adequately recapitulate human HFpEF. Although numerous pre-clinical models developed over the years have been labeled as “HFpEF” specific, there has not been a consensus on the appropriate standards for pre-clinical HFpEF models. Thus, the extent to which they truly mirror human HFpEF cannot be systematically validated. Recently, a new algorithm (H2FPEF) was developed to standardize the clinical diagnosis of HFpEF. In this review, with the aid of the clinical H2FPEF scoring system, we evaluate the clinical applicability and translational values of various murine models of HFpEF.
射血分数保留的心力衰竭(HF)是一种临床综合征,其特征是在左心室收缩功能正常的情况下出现HF的体征和症状。在过去的十年里,HFpEF越来越普遍,占所有临床HF表现的50%以上。HFpEF是一种复杂的疾病,具有异质性临床表现和多种非心脏合并症,这些疾病经常共存并对其病理生理学有贡献。迄今为止,只有少数疗法被证明能改善HFpEF的疗效,尽管效果甚微。有效治疗剂的开发在一定程度上受到缺乏充分概括人类HFpEF的动物模型的阻碍。尽管多年来开发的许多临床前模型都被标记为“HFpEF”特异性,但对于临床前HFpEF模型的适当标准尚未达成共识。因此,它们真正反映人类HFpEF的程度无法系统验证。最近,开发了一种新的算法(H2FPEF)来规范HFpEF的临床诊断。在这篇综述中,借助临床H2FPEF评分系统,我们评估了各种HFpEF小鼠模型的临床适用性和转化价值。
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引用次数: 1
Stemness inhibition by (+)-JQ1 in canine and human mammary cancer cells revealed by machine learning 机器学习揭示(+)-JQ1对犬和人乳腺癌症细胞的抑制作用
Pub Date : 2022-08-10 DOI: 10.3389/fddsv.2022.953988
Maycon Marção, S. Müller, Pedro Luiz P. Xavier, T. Malta
Stemness is a phenotype associated with cancer initiation and progression, malignancy, and therapeutic resistance, exhibiting particular molecular signatures. Targeting stemness has been proposed as a promising strategy against breast cancer stem cells that can play a key role in breast cancer progression, metastasis, and multiple drug resistance. Here, using a previously published one-class logistic regression machine learning algorithm (OCLR) built on pluripotent stem cells to predict stemness in human cancer samples, we provide the stemness index (mRNAsi) of different canine non-tumor and mammary cancer cells. Then, we confirmed that inhibition of BET proteins by (+)-JQ1 reduces stemness in a high mRNAsi canine cancer cell. Furthermore, using public data, we observed that (+)-JQ1 can also decrease stemness in human triple-negative breast cancer cells. Our work suggests that mRNAsi can be used to estimate stemness in different species and confirm epigenetic modulation by BET inhibition as a promising strategy for modulating the stemness phenotype in canine and human mammary cancer cells.
遗忘是一种与癌症发生和发展、恶性肿瘤和治疗耐药性相关的表型,表现出特殊的分子特征。靶向干细胞被认为是一种很有前途的对抗癌症干细胞的策略,它可以在癌症的进展、转移和多重耐药性中发挥关键作用。在此,使用先前发表的基于多能干细胞的一类逻辑回归机器学习算法(OCLR)来预测人类癌症样本中的干性,我们提供了不同犬非肿瘤和乳腺癌症细胞的干性指数(mRNAsi)。然后,我们证实了(+)-JQ1对BET蛋白的抑制降低了高mRNAsi犬癌症细胞中的干性。此外,利用公开数据,我们观察到(+)-JQ1也可以降低人类癌症三阴性细胞的干性。我们的工作表明,mRNAsi可用于评估不同物种的干性,并证实通过BET抑制的表观遗传学调节是调节犬和人类癌症细胞干性表型的一种有前途的策略。
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引用次数: 1
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Frontiers in drug discovery
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