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Current advances in our understanding of circular RNA (circRNA) in Alzheimer’s disease (AD); the potential utilization of synthetic circRNAs as a therapeutic strategy in the clinical management of AD 我们对阿尔茨海默病(AD)中环状RNA(circRNA)的理解的最新进展;合成circRNA在AD临床治疗中的潜在应用
Pub Date : 2022-08-24 DOI: 10.3389/fddsv.2022.983030
Yuhai Zhao, V. Jaber, W. Lukiw
mRNA-mediated gene expression appears to be signi cantly in AD and CNS, our understanding of con fi guration and composition of circRNA is these ssRNAs are highly can in pathophysiological for extended periods, and therapeutically can be designed and synthesized to carry multiple ssRNA-mediated regulatory signals. Based on these and other very recent fi ndings this Opinion ” paper will: 1) address our current understanding of the emerging role of circRNAs in neurodegeneration with special reference to AD; and 2) discuss the intriguing possibility of using synthetic circRNAs containing multiple inserted miRNA, (AM; antagomir), anti-mRNA and/or other sequences in tandem combination with a personalized as an innovative for the and
信使核糖核酸介导的基因表达似乎在AD和中枢神经系统中具有重要意义,我们对circRNA的结构和组成的理解是,这些ssRNA在较长时间内具有高度的病理生理活性,并且在治疗上可以设计和合成携带多种ssRNA介导的调节信号。基于这些和其他最近的发现,本意见“论文将:1)阐述我们目前对circRNA在神经退行性变中的新作用的理解,特别是对AD的理解;和2)讨论将含有多个插入的miRNA、(AM;antagomir)、抗-mRNA和/或其他序列的合成circRNA与个性化的创新药物串联使用的有趣可能性
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引用次数: 5
Modeling heart failure with preserved ejection fraction in rodents: Where do we stand? 用保留的射血分数模拟啮齿动物的心力衰竭:我们站在哪里?
Pub Date : 2022-08-11 DOI: 10.3389/fddsv.2022.948407
Chun Chou, M. Chin
Heart failure (HF) with preserved ejection fraction (HFpEF) is a clinical syndrome characterized by signs and symptoms of HF in the presence of a normal left ventricular systolic function. Over the past decade, HFpEF has become increasingly prevalent, accounting for greater than 50% of all clinical HF presentations. HFpEF is a complex disease with heterogeneous clinical presentations and multiple non-cardiac comorbidities, which frequently co-exist and contribute to its pathophysiology. To date, only a handful of therapies have been proven to improve, albeit marginally, the outcomes in HFpEF. The development of effective therapeutic agents is in part hampered by the lack of animal models that adequately recapitulate human HFpEF. Although numerous pre-clinical models developed over the years have been labeled as “HFpEF” specific, there has not been a consensus on the appropriate standards for pre-clinical HFpEF models. Thus, the extent to which they truly mirror human HFpEF cannot be systematically validated. Recently, a new algorithm (H2FPEF) was developed to standardize the clinical diagnosis of HFpEF. In this review, with the aid of the clinical H2FPEF scoring system, we evaluate the clinical applicability and translational values of various murine models of HFpEF.
射血分数保留的心力衰竭(HF)是一种临床综合征,其特征是在左心室收缩功能正常的情况下出现HF的体征和症状。在过去的十年里,HFpEF越来越普遍,占所有临床HF表现的50%以上。HFpEF是一种复杂的疾病,具有异质性临床表现和多种非心脏合并症,这些疾病经常共存并对其病理生理学有贡献。迄今为止,只有少数疗法被证明能改善HFpEF的疗效,尽管效果甚微。有效治疗剂的开发在一定程度上受到缺乏充分概括人类HFpEF的动物模型的阻碍。尽管多年来开发的许多临床前模型都被标记为“HFpEF”特异性,但对于临床前HFpEF模型的适当标准尚未达成共识。因此,它们真正反映人类HFpEF的程度无法系统验证。最近,开发了一种新的算法(H2FPEF)来规范HFpEF的临床诊断。在这篇综述中,借助临床H2FPEF评分系统,我们评估了各种HFpEF小鼠模型的临床适用性和转化价值。
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引用次数: 1
Stemness inhibition by (+)-JQ1 in canine and human mammary cancer cells revealed by machine learning 机器学习揭示(+)-JQ1对犬和人乳腺癌症细胞的抑制作用
Pub Date : 2022-08-10 DOI: 10.3389/fddsv.2022.953988
Maycon Marção, S. Müller, Pedro Luiz P. Xavier, T. Malta
Stemness is a phenotype associated with cancer initiation and progression, malignancy, and therapeutic resistance, exhibiting particular molecular signatures. Targeting stemness has been proposed as a promising strategy against breast cancer stem cells that can play a key role in breast cancer progression, metastasis, and multiple drug resistance. Here, using a previously published one-class logistic regression machine learning algorithm (OCLR) built on pluripotent stem cells to predict stemness in human cancer samples, we provide the stemness index (mRNAsi) of different canine non-tumor and mammary cancer cells. Then, we confirmed that inhibition of BET proteins by (+)-JQ1 reduces stemness in a high mRNAsi canine cancer cell. Furthermore, using public data, we observed that (+)-JQ1 can also decrease stemness in human triple-negative breast cancer cells. Our work suggests that mRNAsi can be used to estimate stemness in different species and confirm epigenetic modulation by BET inhibition as a promising strategy for modulating the stemness phenotype in canine and human mammary cancer cells.
遗忘是一种与癌症发生和发展、恶性肿瘤和治疗耐药性相关的表型,表现出特殊的分子特征。靶向干细胞被认为是一种很有前途的对抗癌症干细胞的策略,它可以在癌症的进展、转移和多重耐药性中发挥关键作用。在此,使用先前发表的基于多能干细胞的一类逻辑回归机器学习算法(OCLR)来预测人类癌症样本中的干性,我们提供了不同犬非肿瘤和乳腺癌症细胞的干性指数(mRNAsi)。然后,我们证实了(+)-JQ1对BET蛋白的抑制降低了高mRNAsi犬癌症细胞中的干性。此外,利用公开数据,我们观察到(+)-JQ1也可以降低人类癌症三阴性细胞的干性。我们的工作表明,mRNAsi可用于评估不同物种的干性,并证实通过BET抑制的表观遗传学调节是调节犬和人类癌症细胞干性表型的一种有前途的策略。
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引用次数: 1
Nanobodies: COVID-19 and Future Perspectives 纳米体:COVID-19和未来展望
Pub Date : 2022-07-18 DOI: 10.3389/fddsv.2022.927164
Guillermo Valenzuela-Nieto, Zaray Miranda-Chacón, Constanza Salinas-Rebolledo, Ronald Jara, Alexei Cuevas, Anne D. Berking, A. Rojas-Fernandez
The COVID-19 pandemic has driven biotechnological developments to provide new and more effective tools for prophylaxis, diagnosis, and therapy. Historically, monoclonal antibodies have been valuable tools; however, the pandemic has shown some weaknesses, such as production limitations at a global scale. An alternative to conventional monoclonal antibodies are nanobodies, recombinant fragments of the variable region of single-domain antibodies derived mainly from the Camelidae family. Nanobodies have multiple characteristic benefits: they are small (15 KDa) and have remarkable refolding capability and unlimited possibilities for modifications due to their recombinant nature. Here, we review the application of nanobodies in diagnosis and treatment of SARS-CoV-2 infection.
COVID-19大流行推动了生物技术的发展,为预防、诊断和治疗提供了新的和更有效的工具。从历史上看,单克隆抗体一直是有价值的工具;然而,大流行显示出一些弱点,例如全球范围内的生产限制。传统单克隆抗体的另一种选择是纳米抗体,这是主要来自Camelidae家族的单域抗体可变区的重组片段。纳米体具有多种特点:它们体积小(15kda),具有显著的再折叠能力,并且由于其重组性质而具有无限的修饰可能性。本文就纳米体在SARS-CoV-2感染诊断和治疗中的应用进行综述。
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引用次数: 7
Reszinate—A Phase 1/2 Randomized Clinical Trial of Zinc and Resveratrol Utilizing Home Patient-Obtained Nasal and Saliva Viral Sampling Reszinate-A:锌和白藜芦醇的1/2期随机临床试验,利用家庭患者获得的鼻腔和唾液病毒取样
Pub Date : 2022-07-15 DOI: 10.3389/fddsv.2022.910124
H. Kaplan, Kai Wang, Kimberly M. Reeves, J. Scanlan, Christopher C. Nunn, D. Kieper, Joshua L. Mark, Inyoul Y. Lee, Rachel Liu, R. Jin, Michael J. Bolton, J. Goldman
Background: Safe, effective, and inexpensive treatment for COVID-19 is an urgent unmet medical need. Zinc and resveratrol have been reported to have antiviral activity, and resveratrol may increase zinc activity at the site of replication by increasing intracellular zinc concentrations.Methods: A 1:1 randomized, placebo-controlled trial of zinc 150 mg plus resveratrol 4 g daily for 5 days versus placebos in outpatients with SARS-CoV-2 was carried out from 9/21/2020–1/22/2021 in Seattle, Washington. Viral shedding was followed with patient self-collected nasal and saliva samples by measuring qRT-PCR for SARS-CoV-2 N gene days 1–7, 10, and 14. Patients filled out a web-based questionnaire on days 1–14 to report symptoms, vital signs and adherence to the study intervention. The study was posted as Clinical Trials.gov NCT04542993 on 9 September 2020.Results: A total of 30 participants (14 treatment; 16 placebos) had ≥1 day of the protocol treatment and were evaluable for the primary or secondary outcome. There was no difference in viral shedding between groups, nor in the resolution of symptoms. There was a trend toward a more rapid decrease in symptoms in the treatment group, though this was not statistically significant in the GLM model. Viral shedding was similar between patient self-collected mid-turbinate nasal swabs and expectorated saliva samples with a good correlation.Conclusion: SARS-CoV-2 shedding and COVID-19 symptoms were not statistically significantly decreased by treatment. Viral shedding correlates well between patient-obtained home nasal swabs and saliva sampling.
背景:安全、有效和廉价的COVID-19治疗是一项尚未得到满足的迫切医疗需求。据报道,锌和白藜芦醇具有抗病毒活性,白藜芦醇可能通过增加细胞内锌浓度来增加复制部位的锌活性。方法:从2020年9月21日至2021年1月22日,在华盛顿州西雅图对门诊SARS-CoV-2患者进行了一项1:1随机、安慰剂对照试验,锌150 mg加白藜芦醇4 g,每天5天,与安慰剂相比。第1-7、10和14天,通过检测sars - cov - 2n基因的qRT-PCR检测患者自采集的鼻腔和唾液样本,跟踪病毒脱落情况。患者在第1-14天填写了一份基于网络的问卷,报告症状、生命体征和对研究干预的依从性。该研究于2020年9月9日发布在Clinical Trials.gov NCT04542993上。结果:共30例受试者(14例治疗;16个安慰剂)有≥1天的方案治疗,并可评估主要或次要结局。两组之间的病毒脱落没有差异,症状的缓解也没有差异。治疗组有症状更快减轻的趋势,尽管这在GLM模型中没有统计学意义。患者自行收集的中鼻甲鼻拭子与痰液样本的病毒脱落相似,相关性良好。结论:经治疗后SARS-CoV-2的脱落和COVID-19症状均无统计学意义。病毒脱落在患者获得的家庭鼻拭子和唾液取样之间有很好的相关性。
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引用次数: 1
Overcoming Market Failures in Pandemic Drug Discovery Through Open Science: A Canadian Solution 通过开放科学克服流行病药物发现的市场失灵:加拿大的解决方案
Pub Date : 2022-05-26 DOI: 10.3389/fddsv.2022.898654
E. Gold, A. Edwards
Among the lessons learned from the COVID-19 pandemic is the need to develop antiviral drugs poised to treat the next pandemic. Unfortunately, traditional drug development economic models, centered principally on patents, are ineffective to induce private sector investment due to unpredictable timing and cause of the next pandemic. As a result, illustrated by the COVID-19 pandemic, it is the public and philanthropic sectors sectors that overwhelmingly fund the development of innovative vaccines and therapies. To meet the need for proactive antiviral medicines in advance of the next pandemic, new models of drug development are needed. Open science partnerships (OSPs) show promise in this regard. Rather than rely principally on patents and private investment, OSPs combine a variety of academic, philanthropic, governmental, and private sector incentives to share knowledge and develop and test antiviral drugs. Private sector investments are, within an OSP, not only leveraged against investments by other actors, but predicated on gaining regulatory data exclusivity, a known and secure form of commercial advantage. Building on domestic expertise in OSPs, Canadian leaders created the Viral Interruption Medicines Initiative, a not-for-profit OSP, to develop pandemic ready-antivirals and address other areas of market failure.
从新冠肺炎大流行中吸取的教训之一是需要开发抗病毒药物来治疗下一次大流行。不幸的是,由于下一次疫情的时间和原因不可预测,主要以专利为中心的传统药物开发经济模式无法吸引私营部门的投资。因此,新冠肺炎大流行表明,公共和慈善部门为创新疫苗和疗法的开发提供了绝大多数资金。为了在下一次大流行之前满足对主动抗病毒药物的需求,需要新的药物开发模式。开放科学伙伴关系在这方面显示出希望。OSP不是主要依赖专利和私人投资,而是将各种学术、慈善、政府和私营部门的激励措施结合起来,分享知识,开发和测试抗病毒药物。在OSP中,私营部门的投资不仅与其他行为者的投资相抗衡,而且以获得监管数据的排他性为前提,这是一种已知且安全的商业优势。在国内OSP专业知识的基础上,加拿大领导人创建了病毒阻断药物倡议,这是一个非营利的OSP,旨在开发应对疫情的抗病毒药物,并解决市场失灵的其他领域。
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引用次数: 3
Furin and COVID-19: Structure, Function and Chemoinformatic Analysis of Representative Active Site Inhibitors Furin与新冠肺炎:代表性活性位点抑制剂的结构、功能和化学信息学分析
Pub Date : 2022-05-10 DOI: 10.3389/fddsv.2022.899239
B. Villoutreix, I. Badiola, A. Khatib
Furin is involved in the endoproteolytic processing of various protein precursors implicated in many diseases such as diabetes, obesity, atherosclerosis, cancer, Alzheimer’s disease and viral infection including COVID-19. Recently, cell entry of SARS-CoV-2 was found to require sequential cleavage of the viral spike glycoprotein (S protein) at the S1/S2 and the S2ʹ cleavage sites. The S1/S2 site (PRRAR) can be cleaved by the proprotein convertase furin that facilitates membrane fusion and viral spread. Here we summarized the recent findings on furin and S protein structures, the role of S protein cleavage by furin during SARS-CoV-2 infection. We analyzed 12 diverse representative inhibitors of furin using a chemoinformatic approach starting from a list of 628 compounds downloaded from the ChEMBL database. Among those, only 76 survived a soft rule of five filtering step. Structural alerts are present on most of these molecules while some compounds are also predicted to act on toxicity targets. No clinical trials are presently listed at the ClinicalTrials.gov website regarding small molecule inhibitors of furin.
Furin参与多种蛋白质前体的内蛋白酶解过程,这些蛋白质前体与许多疾病有关,如糖尿病、肥胖症、动脉粥样硬化、癌症、阿尔茨海默病和包括新冠肺炎在内的病毒感染。最近,发现严重急性呼吸系统综合征冠状病毒2型的细胞进入需要在S1/S2和S2切割位点顺序切割病毒刺突糖蛋白(S蛋白)。S1/S2位点(PRRAR)可以被促进膜融合和病毒传播的前蛋白转化酶弗林切割。在这里,我们总结了关于弗林蛋白酶和S蛋白结构的最新发现,以及弗林蛋白酶在严重急性呼吸系统综合征冠状病毒2型感染中切割S蛋白的作用。我们使用化学信息学方法分析了12种不同的代表性弗林抑制剂,从ChEMBL数据库下载的628种化合物列表开始。在这些人中,只有76人通过了五步过滤的软规则。这些分子中的大多数都存在结构警报,而一些化合物也被预测会作用于毒性目标。目前,ClinicalTrials.gov网站上没有列出关于弗林小分子抑制剂的临床试验。
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引用次数: 5
Peptide-Based Strategies Against SARS-CoV-2 Attack: An Updated In Silico Perspective 基于肽的抗SARS-CoV-2攻击策略:最新的计算机视角
Pub Date : 2022-05-10 DOI: 10.3389/fddsv.2022.899477
G. Moroy, P. Tufféry
Because of its scale and suddenness, the SARS-CoV-2 pandemic has created an unprecedented challenge in terms of drug development. Apart from being natural candidates for vaccine design, peptides are a class of compounds well suited to target protein-protein interactions, and peptide drug development benefits from the progress of in silico protocols that have emerged within the last decade. Here, we review the different strategies that have been considered for the development of peptide drugs against SARS-CoV-2. Thanks to progress in experimental structure determination, structural information has rapidly become available for most of the proteins encoded by the virus, easing in silico analyses to develop drugs or vaccines. The repurposing of antiviral/antibacterial peptide drugs has not been successful so far. The most promising results, but not the only ones, have been obtained targeting the interaction between SARS-CoV-2 spike protein and the Angiotensin-Converting Enzyme 2, which triggers cellular infection by the virus and its replication. Within months, structure-based peptide design has identified competing for picomolar candidates for the interaction, proving that the development of peptide drugs targeting protein-protein interactions is maturing. Although no drug specifically designed against SARS-CoV-2 has yet reached the market, lessons from peptide drug development against SARS-CoV-2 suggest that peptide development is now a plausible alternative to small compounds.
由于其规模和突发性,SARS-CoV-2大流行在药物开发方面带来了前所未有的挑战。除了作为疫苗设计的天然候选物外,多肽是一类非常适合靶蛋白-蛋白相互作用的化合物,并且多肽药物的开发受益于过去十年中出现的硅协议的进展。在这里,我们回顾了针对SARS-CoV-2的肽药物开发的不同策略。由于实验结构测定的进展,病毒编码的大多数蛋白质的结构信息已迅速获得,从而简化了开发药物或疫苗的计算机分析。迄今为止,抗病毒/抗菌肽药物的再利用尚未取得成功。针对SARS-CoV-2刺突蛋白与血管紧张素转换酶2之间的相互作用,已经获得了最有希望的结果,但不是唯一的结果,这种相互作用会引发病毒的细胞感染及其复制。在几个月内,基于结构的肽设计已经确定了相互作用的皮摩尔候选物的竞争,证明针对蛋白质-蛋白质相互作用的肽药物的开发正在成熟。虽然目前还没有专门针对SARS-CoV-2设计的药物进入市场,但针对SARS-CoV-2的肽药物开发的经验表明,肽开发现在是小化合物的合理替代品。
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引用次数: 5
Advances in Modelling COVID-19 in Animals COVID-19动物模型研究进展
Pub Date : 2022-05-02 DOI: 10.3389/fddsv.2022.899587
Petr Nickl, Miles Joseph Raishbrook, L. Syding, R. Sedláček
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) is a positive-sense-single stranded RNA virus and the cause of the coronavirus disease 2019 (COVID-19). The World Health Organisation has confirmed over 250 million cases with over 5.1 million deaths as a result of this pandemic since December 2019. A global outbreak of such intensity and perseverance is due to the novelty of SARS-CoV2 virus, meaning humans lack any pre-existing immunity to the virus. Humanised animal models, from rodents to primates, simulating SARS-CoV2 transmission, cell entry and immune defence in humans have already been crucial to boost understanding of its molecular mechanisms of infection, reveal at-risk populations, and study the pathophysiology in vivo. Focus is now turning towards using this knowledge to create effective vaccines and therapeutic agents, as well as optimise their safety for translatable use in humans. SARS-CoV2 possesses remarkable adaptability and rapid mutagenic capabilities thus exploiting innovative animal models will be pivotal to outmanoeuvre it during this pandemic. In this review, we summarise all generated SARS-CoV2-related animal models to date, evaluate their suitability for COVID-19 research, and address the current and future state of the importance of animal models in this field.
严重急性呼吸综合征冠状病毒2(SARS-CoV2)是一种阳性感觉单链RNA病毒,是2019冠状病毒病(新冠肺炎)的病因。自2019年12月以来,世界卫生组织已确认超过2.5亿例病例,超过510万人死于这场疫情。如此强烈和持久的全球爆发是由于严重急性呼吸系统综合征冠状病毒2型的新颖性,这意味着人类对该病毒缺乏任何预先存在的免疫力。从啮齿类动物到灵长类动物,模拟严重急性呼吸系统综合征冠状病毒2型在人类中的传播、细胞进入和免疫防御的人源化动物模型,对于提高对其感染分子机制的理解、揭示高危人群和研究体内病理生理学已经至关重要。现在的重点是利用这些知识来创造有效的疫苗和治疗剂,并优化其在人类中可翻译使用的安全性。严重急性呼吸系统综合征冠状病毒2型具有显著的适应性和快速诱变能力,因此开发创新的动物模型将是在这场疫情中战胜它的关键。在这篇综述中,我们总结了迄今为止生成的所有与SARS-CoV2相关的动物模型,评估了它们对新冠肺炎研究的适用性,并阐述了动物模型在该领域重要性的当前和未来状态。
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引用次数: 0
Developing Small-Molecule Inhibitors of Protein-Protein Interactions Involved in Viral Entry as Potential Antivirals for COVID-19 开发参与病毒进入的蛋白质相互作用的小分子抑制剂作为潜在的COVID-19抗病毒药物
Pub Date : 2022-04-25 DOI: 10.3389/fddsv.2022.898035
P. Buchwald
Blocking protein-protein interactions (PPIs) involved in the initiation of the cell attachment and entry of viruses is an important antiviral mechanism of action including for neutralizing antibodies. Doing it with small-molecule inhibitors (SMIs) is challenging, as it is for all other PPIs, and might require the exploration of chemical space beyond that of typical drug-like structures. However, it could lead to new antiviral agents suitable for oral administration and acting on alternative targets, considerations that are essential for the development of widely acceptable and broad-spectrum preventive or curative therapeutics. Fostemsavir, an antiretroviral that acts via blocking of the gp120–CD4 PPI, supports the feasibility of the concept. Here, a brief review of relevant drug design considerations is presented together with a summary of the progress made toward the identification of SMIs targeting the PPI between the SARS-CoV-2 spike protein and ACE2 that initiates the viral attachment and cellular entry of this coronavirus causing the COVID-19 pandemic. SMIs identified in various screening assays that were also confirmed to have antiviral activity in a live virus or pseudovirus assay with an IC50 < 30 µM so far include several organic dyes (methylene blue, Evans blue, Congo red, direct violet 1), verteporfin, DRI-C23041, and cannabigerolic and cannabidiolic acids. While specificity and activity profiles still need improvement, results so far already provide proof-of-principle evidence for the feasibility of SMIs targeting the SARS-CoV-2-S–hACE2 PPI. Methylene blue, which is approved for clinical use, is orally bioactive, and could act by multiple mechanisms of action, might have potential for repurposing for COVID-19 prevention and treatment.
阻断参与病毒细胞附着和进入的蛋白质-蛋白质相互作用(PPIs)是一种重要的抗病毒作用机制,包括中和抗体。与所有其他PPI一样,使用小分子抑制剂(SMIs)是具有挑战性的,并且可能需要探索典型类药物结构之外的化学空间。然而,它可能会产生适合口服并作用于替代靶点的新型抗病毒药物,这些考虑因素对于开发广泛接受的广谱预防或治疗疗法至关重要。Fostemsavir是一种通过阻断gp120–CD4 PPI发挥作用的抗逆转录病毒药物,它支持这一概念的可行性。在此,简要回顾了相关药物设计考虑因素,并总结了在识别靶向SARS-CoV-2刺突蛋白和ACE2之间PPI的SMI方面取得的进展,ACE2启动了导致新冠肺炎大流行的这种冠状病毒的病毒附着和细胞进入。到目前为止,在IC50<30µM的活病毒或假病毒检测中也证实具有抗病毒活性的各种筛选测定中鉴定的SMI包括几种有机染料(亚甲基蓝、伊文思蓝、刚果红、直接紫1)、维多芬、DRI-C23041以及大麻酚和大麻二酚酸。尽管特异性和活性谱仍需改进,但迄今为止的结果已经为SMIs靶向严重急性呼吸系统综合征冠状病毒2-S–hACE2 PPI的可行性提供了原理证据。亚甲蓝已被批准用于临床,具有口服生物活性,可通过多种作用机制发挥作用,可能具有用于新冠肺炎预防和治疗的潜力。
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引用次数: 3
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Frontiers in drug discovery
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