Pub Date : 2024-12-16eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1526568
Koichi Tamano
Research on enhancing the production of lipids, particularly polyunsaturated fatty acids that are considered important for health, has focused on improvement of metabolism as well as heterologous expression of biosynthetic genes in the oleaginous fungus Aspergillus oryzae. To date, the productivity and production yield of free fatty acids have been enhanced by 10-fold to 90-fold via improvements in metabolism and optimization of culture conditions. Moreover, the productivity of ester-type fatty acids present in triacylglycerols could be enhanced via metabolic improvement. Culturing A. oryzae in a liquid medium supplemented with non-ionic surfactants could also lead to the effective release of free fatty acids from the cells. The current review highlights the advancements made in this field so far and discusses the future outlook for research on lipid production using A. oryzae. I hope the contents are useful for researchers in this field to consider the strategy of increasing production of various valuable metabolites as well as lipids in A. oryzae.
{"title":"Advancements in lipid production research using the koji-mold <i>Aspergillus oryzae</i> and future outlook.","authors":"Koichi Tamano","doi":"10.3389/ffunb.2024.1526568","DOIUrl":"10.3389/ffunb.2024.1526568","url":null,"abstract":"<p><p>Research on enhancing the production of lipids, particularly polyunsaturated fatty acids that are considered important for health, has focused on improvement of metabolism as well as heterologous expression of biosynthetic genes in the oleaginous fungus <i>Aspergillus oryzae</i>. To date, the productivity and production yield of free fatty acids have been enhanced by 10-fold to 90-fold via improvements in metabolism and optimization of culture conditions. Moreover, the productivity of ester-type fatty acids present in triacylglycerols could be enhanced via metabolic improvement. Culturing <i>A. oryzae</i> in a liquid medium supplemented with non-ionic surfactants could also lead to the effective release of free fatty acids from the cells. The current review highlights the advancements made in this field so far and discusses the future outlook for research on lipid production using <i>A. oryzae</i>. I hope the contents are useful for researchers in this field to consider the strategy of increasing production of various valuable metabolites as well as lipids in <i>A. oryzae</i>.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1526568"},"PeriodicalIF":2.1,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11683092/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142908062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-13eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1481865
Caleb Oliver Bedsole, Mary Cowser, Timothy Martin, Jillian Hamilton, Lucia Gonzalez Rodriguez, Thomas M Chappell, Brian D Shaw
Colletotrichum is a globally significant genus of plant pathogens known for causing anthracnose across a diverse array of hosts. Notably, Colletotrichum graminicola is a pathogen affecting maize. Annually, the global economic impact of this pathogen reaches billions of US dollars. C. graminicola produces conidia that have a characteristic falcate shape and are dispersed by rain. Upon attachment to maize leaves, these conidia develop melanized appressoria to penetrate the leaf surface to initiate disease. Recent findings have emphasized the existence of an adhesive strip on only one side of C. graminicola conidia. This strip colocalizes with an actin array, playing a crucial role in facilitating attachment and germination. This asymmetrical adhesive was postulated to enhance spore dispersal by assuring that some conidia do not attach to their initial deposition site. The extent of this asymmetric adhesive phenotype in other Colletotrichum species remains unknown, raising questions about its conservation within the genus. This study reveals the ubiquitous presence of an asymmetric adhesive on the conidia across nine isolates of Colletotrichum, representing eight species. Morphological differences in conidium shape and adhesive distribution were observed. Significantly, Colletotrichum truncatum is unique from other observed species by exhibiting an adhesive strip on both sides of its conidium. Furthermore, in C. graminicola, we noted a simultaneous development of the actin array and detachment from its mother cell after spore development. We posit that the study of other Colletotrichum members holds promise in elucidating the evolutionary trajectory of this phenotype. Furthermore, these insights may prove instrumental in understanding spore dispersal dynamics across diverse hosts, shedding light on the intricate web of host specificity within the genus.
{"title":"Morphological variations and adhesive distribution: a cross-species examination in <i>Colletotrichum</i> conidia.","authors":"Caleb Oliver Bedsole, Mary Cowser, Timothy Martin, Jillian Hamilton, Lucia Gonzalez Rodriguez, Thomas M Chappell, Brian D Shaw","doi":"10.3389/ffunb.2024.1481865","DOIUrl":"10.3389/ffunb.2024.1481865","url":null,"abstract":"<p><p><i>Colletotrichum</i> is a globally significant genus of plant pathogens known for causing anthracnose across a diverse array of hosts. Notably, <i>Colletotrichum graminicola</i> is a pathogen affecting maize. Annually, the global economic impact of this pathogen reaches billions of US dollars. <i>C. graminicola</i> produces conidia that have a characteristic falcate shape and are dispersed by rain. Upon attachment to maize leaves, these conidia develop melanized appressoria to penetrate the leaf surface to initiate disease. Recent findings have emphasized the existence of an adhesive strip on only one side of <i>C. graminicola</i> conidia. This strip colocalizes with an actin array, playing a crucial role in facilitating attachment and germination. This asymmetrical adhesive was postulated to enhance spore dispersal by assuring that some conidia do not attach to their initial deposition site. The extent of this asymmetric adhesive phenotype in other <i>Colletotrichum</i> species remains unknown, raising questions about its conservation within the genus. This study reveals the ubiquitous presence of an asymmetric adhesive on the conidia across nine isolates of <i>Colletotrichum</i>, representing eight species. Morphological differences in conidium shape and adhesive distribution were observed. Significantly, <i>Colletotrichum truncatum</i> is unique from other observed species by exhibiting an adhesive strip on both sides of its conidium. Furthermore, in <i>C. graminicola</i>, we noted a simultaneous development of the actin array and detachment from its mother cell after spore development. We posit that the study of other <i>Colletotrichum</i> members holds promise in elucidating the evolutionary trajectory of this phenotype. Furthermore, these insights may prove instrumental in understanding spore dispersal dynamics across diverse hosts, shedding light on the intricate web of host specificity within the genus.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1481865"},"PeriodicalIF":2.1,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11671520/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142904130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-02eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1426782
Queenta Ngum Nji, Mulunda Mwanza
Introduction: The Food and Agricultural Organization (FAO) reported that numerous diseases can be traced back to the consumption of unsafe food contaminated with mycotoxins. Mycotoxins are secondary metabolites produced by toxigenic filamentous fungi. Mycotoxins reported to be of socio-economic concerns include aflatoxins, fumonisins, zearalenone, ochratoxin A, and deoxynivalenol. These mycotoxins are frequent contaminants of maize especially in the face of climate change and global food insecurity. South Africa is a leading exporter of maize in Africa, hence, it is crucial to evaluate exposure risks with respect to mycotoxin contamination of maize for consumers' safety.
Materials and method: In total, 752 post-harvest maize samples collected from silos over a 3-year period were analysed using liquid chromatography with tandem mass spectrometry (LC-MS/MS) for the occurrence of mycotoxins.
Results and discussion: The overall mean values for all the quantified mycotoxins were within the South Africa regulatory limit as well as the individual samples, apart from DON and FB mycotoxins with 5% and 1% samples, respectively, above the limit. Citrinin was quantified in South African commercial maize for the first time. The presence of major mycotoxins in South African commercial maize even within safety limits is of public health concern, hence, continuous monitoring and evaluation is recommended.
{"title":"Three-year multi-mycotoxin analysis of South African commercial maize from three provinces.","authors":"Queenta Ngum Nji, Mulunda Mwanza","doi":"10.3389/ffunb.2024.1426782","DOIUrl":"10.3389/ffunb.2024.1426782","url":null,"abstract":"<p><strong>Introduction: </strong>The Food and Agricultural Organization (FAO) reported that numerous diseases can be traced back to the consumption of unsafe food contaminated with mycotoxins. Mycotoxins are secondary metabolites produced by toxigenic filamentous fungi. Mycotoxins reported to be of socio-economic concerns include aflatoxins, fumonisins, zearalenone, ochratoxin A, and deoxynivalenol. These mycotoxins are frequent contaminants of maize especially in the face of climate change and global food insecurity. South Africa is a leading exporter of maize in Africa, hence, it is crucial to evaluate exposure risks with respect to mycotoxin contamination of maize for consumers' safety.</p><p><strong>Materials and method: </strong>In total, 752 post-harvest maize samples collected from silos over a 3-year period were analysed using liquid chromatography with tandem mass spectrometry (LC-MS/MS) for the occurrence of mycotoxins.</p><p><strong>Results and discussion: </strong>The overall mean values for all the quantified mycotoxins were within the South Africa regulatory limit as well as the individual samples, apart from DON and FB mycotoxins with 5% and 1% samples, respectively, above the limit. Citrinin was quantified in South African commercial maize for the first time. The presence of major mycotoxins in South African commercial maize even within safety limits is of public health concern, hence, continuous monitoring and evaluation is recommended.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1426782"},"PeriodicalIF":2.1,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11647527/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142840521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-22eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1494795
Alica Fischle, Ulrich Schreiber, Viola Haupt, Felix Schimang, Lina Schürmann, Matthias Behrens, Florian Hübner, Melanie Esselen, Dmitrii V Kalinin, Svetlana A Kalinina
The filamentous fungus Stachybotrys chartarum is rich in meroterpenoid secondary metabolites, some of which carry o-dialdehyde moieties, which are readily derivatized to isoindolinones by addition of primary amines. The structural diversity of phenylspirodrimanes, in particular, is linked to a wide range of biological activities, making them ideal candidates for semi-synthetic modification. In this study, acetoxystachybotrydial acetate was reacted with l-tryptophan and tryptamine, resulting in the detection of both regiospecific isomeric structures - a rare and significant finding that enabled the examination of four novel reaction products. Besides their successful purification, a detailed report on their isomer-specific behavior with regard to chromatographic retention, UV-spectral specificities, nuclear magnetic resonances, and mass spectrometric fragmentation is given. Furthermore, a comprehensive insight into each compounds' unique effect within the tested biological assays is provided, which include cytotoxicity, genotoxicity, their biological activity against serine proteases of the blood coagulation cascade, and in vitro hepatic metabolism, always in comparison to the non-derivatized substance. Ultimately, each isomer can be distinguished already during the purification process, which extends to the biological assays where we present one less cytotoxic, faster metabolized, and more active regio-isomeric phenylspirodrimane-derivative.
{"title":"Biological evaluation of semi-synthetic isoindolinone isomers produced by <i>Stachybotrys chartarum</i>.","authors":"Alica Fischle, Ulrich Schreiber, Viola Haupt, Felix Schimang, Lina Schürmann, Matthias Behrens, Florian Hübner, Melanie Esselen, Dmitrii V Kalinin, Svetlana A Kalinina","doi":"10.3389/ffunb.2024.1494795","DOIUrl":"10.3389/ffunb.2024.1494795","url":null,"abstract":"<p><p>The filamentous fungus <i>Stachybotrys chartarum</i> is rich in meroterpenoid secondary metabolites, some of which carry <i>o</i>-dialdehyde moieties, which are readily derivatized to isoindolinones by addition of primary amines. The structural diversity of phenylspirodrimanes, in particular, is linked to a wide range of biological activities, making them ideal candidates for semi-synthetic modification. In this study, acetoxystachybotrydial acetate was reacted with l-tryptophan and tryptamine, resulting in the detection of both regiospecific isomeric structures - a rare and significant finding that enabled the examination of four novel reaction products. Besides their successful purification, a detailed report on their isomer-specific behavior with regard to chromatographic retention, UV-spectral specificities, nuclear magnetic resonances, and mass spectrometric fragmentation is given. Furthermore, a comprehensive insight into each compounds' unique effect within the tested biological assays is provided, which include cytotoxicity, genotoxicity, their biological activity against serine proteases of the blood coagulation cascade, and <i>in vitro</i> hepatic metabolism, always in comparison to the non-derivatized substance. Ultimately, each isomer can be distinguished already during the purification process, which extends to the biological assays where we present one less cytotoxic, faster metabolized, and more active regio-isomeric phenylspirodrimane-derivative.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1494795"},"PeriodicalIF":2.1,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11621054/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1456964
Rodrigo Prado Rodrigues de Miranda, Talita Kellen Dos Anjos Soares, Daniele Pereira Castro, Fernando Ariel Genta
The application of microorganisms as bio-control agents against arthropod populations is a need in many countries, especially in tropical, subtropical, and neotropical endemic areas. Several arthropod species became agricultural pests of paramount economic significance, and many methods have been developed for field and urban applications to prevent their, the most common being the application of chemical insecticides. However, the indiscriminate treatment based upon those substances acted as a selective pressure for upcoming resistant phenotype populations. As alternative tools, microorganisms have been prospected as complementary tools for pest and vectorial control, once they act in a more specific pattern against target organisms than chemicals. They are considered environmentally friendly since they have considerably less off-target effects. Entomopathogenic fungi are organisms capable of exerting pathogenesis in many vector species, thus becoming potential tools for biological management. The entomopathogenic fungi Metarhizium sp. have been investigated as a microbiological agent for the control of populations of insects in tropical regions. However, the development of entomopathogenic fungi as control tools depends on physiological studies regarding aspects such as mechanisms of pathogenicity, secreted enzymes, viability, and host-pathogen aspects. The following review briefly narrates current aspects of entomopathogenic fungi, such as physiology, cellular characteristics, host-pathogen interactions, and its previous applications against different insect orders with medical and economic importance. Approaches integrating new isolation, prospection, characterization, delivery strategies, formulations, and molecular and genetic tools will be decisive to elucidate the molecular mechanisms of EPFs and to develop more sustainable alternative pesticides.
{"title":"General aspects, host interaction, and application of <i>Metarhizium</i> sp. in arthropod pest and vector control.","authors":"Rodrigo Prado Rodrigues de Miranda, Talita Kellen Dos Anjos Soares, Daniele Pereira Castro, Fernando Ariel Genta","doi":"10.3389/ffunb.2024.1456964","DOIUrl":"10.3389/ffunb.2024.1456964","url":null,"abstract":"<p><p>The application of microorganisms as bio-control agents against arthropod populations is a need in many countries, especially in tropical, subtropical, and neotropical endemic areas. Several arthropod species became agricultural pests of paramount economic significance, and many methods have been developed for field and urban applications to prevent their, the most common being the application of chemical insecticides. However, the indiscriminate treatment based upon those substances acted as a selective pressure for upcoming resistant phenotype populations. As alternative tools, microorganisms have been prospected as complementary tools for pest and vectorial control, once they act in a more specific pattern against target organisms than chemicals. They are considered environmentally friendly since they have considerably less off-target effects. Entomopathogenic fungi are organisms capable of exerting pathogenesis in many vector species, thus becoming potential tools for biological management. The entomopathogenic fungi <i>Metarhizium</i> sp. have been investigated as a microbiological agent for the control of populations of insects in tropical regions. However, the development of entomopathogenic fungi as control tools depends on physiological studies regarding aspects such as mechanisms of pathogenicity, secreted enzymes, viability, and host-pathogen aspects. The following review briefly narrates current aspects of entomopathogenic fungi, such as physiology, cellular characteristics, host-pathogen interactions, and its previous applications against different insect orders with medical and economic importance. Approaches integrating new isolation, prospection, characterization, delivery strategies, formulations, and molecular and genetic tools will be decisive to elucidate the molecular mechanisms of EPFs and to develop more sustainable alternative pesticides.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1456964"},"PeriodicalIF":2.1,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11614621/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142781922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-15eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1519411
Jesús Adonai Maguey-González, Juan D Latorre, Sergio Gomez-Rosales, Abraham Mendez-Albores
{"title":"Editorial: Predicting, managing, and minimizing mycotoxicosis in farm animals.","authors":"Jesús Adonai Maguey-González, Juan D Latorre, Sergio Gomez-Rosales, Abraham Mendez-Albores","doi":"10.3389/ffunb.2024.1519411","DOIUrl":"https://doi.org/10.3389/ffunb.2024.1519411","url":null,"abstract":"","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1519411"},"PeriodicalIF":2.1,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11604792/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142775082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-11eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1511041
Jeanett Holzknecht, Florentine Marx
[This corrects the article DOI: 10.3389/ffunb.2024.1451455.].
[此处更正了文章 DOI:10.3389/ffunb.2024.1451455]。
{"title":"Corrigendum: Navigating the fungal battlefield: cysteine-rich antifungal proteins and peptides from Eurotiales.","authors":"Jeanett Holzknecht, Florentine Marx","doi":"10.3389/ffunb.2024.1511041","DOIUrl":"https://doi.org/10.3389/ffunb.2024.1511041","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.3389/ffunb.2024.1451455.].</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1511041"},"PeriodicalIF":2.1,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11587351/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142717850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The complex and dynamic interactions between fungi and plants constitute a critical arena in ecological science. In this comprehensive review paper, we explore the multifaceted relationships at the fungi-plant interface, encompassing both mutualistic and antagonistic interactions, and the environmental factors influencing these associations. Mutualistic associations, notably mycorrhizal relationships, play a pivotal role in enhancing plant health and ecological balance. On the contrary, fungal diseases pose a significant threat to plant health, agriculture, and natural ecosystems, such as rusts, smuts, powdery mildews, downy mildews, and wilts, which can cause extensive damage and lead to substantial economic losses. Environmental constraints encompassing abiotic and biotic factors are elucidated to understand their role in shaping the fungi-plant interface. Temperature, moisture, and soil conditions, along with the presence of other microbes, herbivores, and competing plants, significantly influence the outcome of these interactions. The interplay between mutualism and antagonism is emphasised as a key determinant of ecosystem health and stability. The implications of these interactions extend to overall ecosystem productivity, agriculture, and conservation efforts. The potential applications of this knowledge in bioremediation, biotechnology, and biocontrol strategies emphasise the importance of adapting to climate change. However, challenges and future directions in this field include the impacts of climate change, emerging fungal pathogens, genomic insights, and the role of the fungi-plant interface in restoration ecology. Hence, this review paper provides a comprehensive overview of fungi-plant interactions, their environmental influences, and their applications in agriculture, conservation, and ecological restoration.
{"title":"An overview of symbiotic and pathogenic interactions at the fungi-plant interface under environmental constraints.","authors":"Sunishtha Mishra, Anukriti Srivastava, Ajeet Singh, Girish Chandra Pandey, Garima Srivastava","doi":"10.3389/ffunb.2024.1363460","DOIUrl":"https://doi.org/10.3389/ffunb.2024.1363460","url":null,"abstract":"<p><p>The complex and dynamic interactions between fungi and plants constitute a critical arena in ecological science. In this comprehensive review paper, we explore the multifaceted relationships at the fungi-plant interface, encompassing both mutualistic and antagonistic interactions, and the environmental factors influencing these associations. Mutualistic associations, notably mycorrhizal relationships, play a pivotal role in enhancing plant health and ecological balance. On the contrary, fungal diseases pose a significant threat to plant health, agriculture, and natural ecosystems, such as rusts, smuts, powdery mildews, downy mildews, and wilts, which can cause extensive damage and lead to substantial economic losses. Environmental constraints encompassing abiotic and biotic factors are elucidated to understand their role in shaping the fungi-plant interface. Temperature, moisture, and soil conditions, along with the presence of other microbes, herbivores, and competing plants, significantly influence the outcome of these interactions. The interplay between mutualism and antagonism is emphasised as a key determinant of ecosystem health and stability. The implications of these interactions extend to overall ecosystem productivity, agriculture, and conservation efforts. The potential applications of this knowledge in bioremediation, biotechnology, and biocontrol strategies emphasise the importance of adapting to climate change. However, challenges and future directions in this field include the impacts of climate change, emerging fungal pathogens, genomic insights, and the role of the fungi-plant interface in restoration ecology. Hence, this review paper provides a comprehensive overview of fungi-plant interactions, their environmental influences, and their applications in agriculture, conservation, and ecological restoration.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1363460"},"PeriodicalIF":2.1,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11544544/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142633487","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1446674
Monike Oggerin, Catalina Del Moral, Nuria Rodriguez, Nuria Fernandez-Gonzalez, José Manuel Martínez, Iván Lorca, Ricardo Amils
Southwest Spain's Río Tinto is a stressful acidic microbial habitat with a noticeably high concentration of toxic heavy metals. Nevertheless, it has an unexpected degree of eukaryotic diversity in its basin, with a high diversity of fungal saprotrophs. Although some studies on the eukaryotic diversity in Rio Tinto have been published, none of them used molecular methodologies to describe the fungal diversity and taxonomic affiliations that emerge along the river in different seasons. The aim of the present study was to isolate and describe the seasonal diversity of the fungal community in the Río Tinto basin and its correlation with the physicochemical parameters existing along the river's course. The taxonomic affiliation of 359 fungal isolates, based on the complete internal transcribed spacer DNA sequences, revealed a high degree of diversity, identifying species belonging primarily to the phylum Ascomycota, but representatives of the Basidiomycota and Mucoromycota phyla were also present. In total, 40 representative isolates along the river were evaluated for their tolerance to toxic heavy metals. Some of the isolates were able to grow in the presence of 1000 mM of Cu2+, 750 mM of As5+ and Cd2+, and 100 mM of Co2+, Ni2+, and Pb2+.
西班牙西南部的 Río Tinto 是一个压力很大的酸性微生物栖息地,有毒重金属的浓度很高。然而,该流域的真核生物多样性程度却出乎意料,其中真菌噬菌体的多样性很高。虽然已经发表了一些关于力拓河真核生物多样性的研究,但没有一项研究使用分子方法来描述不同季节沿河出现的真菌多样性和分类归属。本研究旨在分离和描述 Río Tinto 河流域真菌群落的季节多样性及其与河道沿岸理化参数的相关性。根据完整的内部转录间隔 DNA 序列,对 359 个真菌分离物进行了分类归属,结果显示真菌具有高度的多样性,主要属于子囊菌门,但也有担子菌门和粘菌门的代表物种。共对沿河 40 个代表性分离物进行了评估,以确定其对有毒重金属的耐受性。其中一些分离菌株能够在 1000 mM 的 Cu2+、750 mM 的 As5+和 Cd2+,以及 100 mM 的 Co2+、Ni2+ 和 Pb2+条件下生长。
{"title":"Metal tolerance of Río Tinto fungi.","authors":"Monike Oggerin, Catalina Del Moral, Nuria Rodriguez, Nuria Fernandez-Gonzalez, José Manuel Martínez, Iván Lorca, Ricardo Amils","doi":"10.3389/ffunb.2024.1446674","DOIUrl":"10.3389/ffunb.2024.1446674","url":null,"abstract":"<p><p>Southwest Spain's Río Tinto is a stressful acidic microbial habitat with a noticeably high concentration of toxic heavy metals. Nevertheless, it has an unexpected degree of eukaryotic diversity in its basin, with a high diversity of fungal saprotrophs. Although some studies on the eukaryotic diversity in Rio Tinto have been published, none of them used molecular methodologies to describe the fungal diversity and taxonomic affiliations that emerge along the river in different seasons. The aim of the present study was to isolate and describe the seasonal diversity of the fungal community in the Río Tinto basin and its correlation with the physicochemical parameters existing along the river's course. The taxonomic affiliation of 359 fungal isolates, based on the complete internal transcribed spacer DNA sequences, revealed a high degree of diversity, identifying species belonging primarily to the phylum Ascomycota, but representatives of the Basidiomycota and Mucoromycota phyla were also present. In total, 40 representative isolates along the river were evaluated for their tolerance to toxic heavy metals. Some of the isolates were able to grow in the presence of 1000 mM of Cu<sup>2+</sup>, 750 mM of As<sup>5+</sup> and Cd<sup>2+</sup>, and 100 mM of Co<sup>2+</sup>, Ni<sup>2+</sup>, and Pb<sup>2+</sup>.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1446674"},"PeriodicalIF":2.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11521807/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142549255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/ffunb.2024.1459229
Leandro Lopes da Silva, Hilberty Lucas Nunes Correia, Osiel Silva Gonçalves, Pedro Marcus Pereira Vidigal, Rafael Oliveira Rosa, Mateus Ferreira Santana, Marisa Vieira de Queiroz
Colletotrichum lindemuthianum is the etiological agent of anthracnose disease in common bean (Phaseolus vulgaris L.), noted for its ability to cause serious damage and significant pathogenic variability. This study reveals the features of the high-quality genome of C. lindemuthianum. Analysis showed improvements over the first assembly, with the refined genome having 119 scaffolds, ten times fewer than the first, and a 19% increase in gene number. The effector candidates increased by nearly 1.5 times. More than 40% of the amino acid sequences with homologs in the Pathogen-Host Interactions (PHI-base) database are linked to pathogenicity. Of 18 putative proteins identified as Chitinase-like Protein, six have a mutation in the enzyme catalytic motif, and three showed gene expression in the biotrophic phase, indicating they can act as effectors. Comparative genomic analyses with 30 other fungal species revealed that C. lindemuthianum is among the top three fungi encoding transport proteins. Seven Necrosis and Ethylene-Inducing Peptide 1 (Nep1)-Like Proteins (NLPs) are present in the C. lindemuthianum genome, but none had complete identity with the GHRHDWE conserved motif of NLPs; two were grouped with proteins that induce necrosis and may retain the capability to induce host necrosis. Colletotrichum species show a high number of secondary metabolite (SM) clusters, with C. lindemuthianum having 47 SM clusters. Approximately 60% of the C. lindemuthianum genome is composed of repetitive elements, a significantly higher proportion than in other fungi. These differences in transposable element (TE) numbers may explain why C. lindemuthianum has one of the largest genomes among the fungi analyzed. A significant portion of its genome comprises retroelements, particularly the Ty1/Copia superfamily, which accounts for 22% of the genome and represents 40% of the repetitive elements. The genomic profile features a remarkably high RIP-affected genomic proportion of 54.77%, indicating substantial RIP activity within this species. This high-quality genome of C. lindemuthianum, a significant pathogen in common bean cultivation, will support future research into this pathosystem, fostering a deeper understanding of the interaction between the fungus and its host.
Colletotrichum lindemuthianum 是普通豆类(Phaseolus vulgaris L.)炭疽病的病原菌,具有严重的危害能力和显著的致病变异性。本研究揭示了 C. lindemuthianum 高质量基因组的特征。分析表明,与第一次组装相比,改进后的基因组有 119 个支架,是第一次组装的十倍,基因数量增加了 19%。候选效应物增加了近 1.5 倍。病原体-宿主相互作用(PHI-base)数据库中40%以上的氨基酸序列与致病性有关。在被鉴定为几丁质酶样蛋白的 18 个推测蛋白中,有 6 个的酶催化基团发生了突变,有 3 个在生物营养阶段出现了基因表达,表明它们可以充当效应物。与其他 30 种真菌的基因组比较分析表明,C. lindemuthianum 是编码转运蛋白最多的三种真菌之一。C.lindemuthianum基因组中有7个坏死和乙烯诱导肽1(Nep1)样蛋白(NLPs),但没有一个与NLPs的GHRHDWE保守基序完全一致;有两个与诱导坏死的蛋白归为一类,可能保留了诱导宿主坏死的能力。Colletotrichum 种类显示出大量次生代谢物(SM)簇,其中 C. lindemuthianum 有 47 个 SM 簇。约 60% 的 C. lindemuthianum 基因组由重复元件组成,这一比例明显高于其他真菌。转座元件(TE)数量上的这些差异可能解释了为什么 C. lindemuthianum 是所分析的真菌中基因组最大的真菌之一。其基因组的很大一部分由逆转录元组成,尤其是 Ty1/Copia 超家族,占基因组的 22%,占重复元件的 40%。其基因组特征是受 RIP 影响的基因组比例高达 54.77%,这表明该物种体内存在大量的 RIP 活动。C. lindemuthianum是普通豆类栽培中的一种重要病原菌,其高质量的基因组将有助于今后对该病原菌系统的研究,加深对该真菌与其寄主之间相互作用的理解。
{"title":"What lies behind the large genome of <i>Colletotrichum lindemuthianum</i>.","authors":"Leandro Lopes da Silva, Hilberty Lucas Nunes Correia, Osiel Silva Gonçalves, Pedro Marcus Pereira Vidigal, Rafael Oliveira Rosa, Mateus Ferreira Santana, Marisa Vieira de Queiroz","doi":"10.3389/ffunb.2024.1459229","DOIUrl":"https://doi.org/10.3389/ffunb.2024.1459229","url":null,"abstract":"<p><p><i>Colletotrichum lindemuthianum</i> is the etiological agent of anthracnose disease in common bean (<i>Phaseolus vulgaris</i> L.), noted for its ability to cause serious damage and significant pathogenic variability. This study reveals the features of the high-quality genome of <i>C. lindemuthianum</i>. Analysis showed improvements over the first assembly, with the refined genome having 119 scaffolds, ten times fewer than the first, and a 19% increase in gene number. The effector candidates increased by nearly 1.5 times. More than 40% of the amino acid sequences with homologs in the Pathogen-Host Interactions (PHI-base) database are linked to pathogenicity. Of 18 putative proteins identified as Chitinase-like Protein, six have a mutation in the enzyme catalytic motif, and three showed gene expression in the biotrophic phase, indicating they can act as effectors. Comparative genomic analyses with 30 other fungal species revealed that <i>C. lindemuthianum</i> is among the top three fungi encoding transport proteins. Seven Necrosis and Ethylene-Inducing Peptide 1 (Nep1)-Like Proteins (NLPs) are present in the <i>C. lindemuthianum</i> genome, but none had complete identity with the GHRHDWE conserved motif of NLPs; two were grouped with proteins that induce necrosis and may retain the capability to induce host necrosis. <i>Colletotrichum</i> species show a high number of secondary metabolite (SM) clusters, with <i>C. lindemuthianum</i> having 47 SM clusters. Approximately 60% of the <i>C. lindemuthianum</i> genome is composed of repetitive elements, a significantly higher proportion than in other fungi. These differences in transposable element (TE) numbers may explain why <i>C. lindemuthianum</i> has one of the largest genomes among the fungi analyzed. A significant portion of its genome comprises retroelements, particularly the <i>Ty1/Copia</i> superfamily, which accounts for 22% of the genome and represents 40% of the repetitive elements. The genomic profile features a remarkably high RIP-affected genomic proportion of 54.77%, indicating substantial RIP activity within this species. This high-quality genome of <i>C. lindemuthianum</i>, a significant pathogen in common bean cultivation, will support future research into this pathosystem, fostering a deeper understanding of the interaction between the fungus and its host.</p>","PeriodicalId":73084,"journal":{"name":"Frontiers in fungal biology","volume":"5 ","pages":"1459229"},"PeriodicalIF":2.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518743/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142549256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}