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Opportunities for optimizing fungal biological control agents for long-term and effective management of insect pests of orchards and vineyards: a review. 优化真菌生物防治制剂以长期有效治理果园和葡萄园害虫的机会:综述。
IF 2.1 Q3 MYCOLOGY Pub Date : 2024-08-01 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1443343
Christopher M Wallis, Mark S Sisterson

Novel tactics for controlling insect pests in perennial fruit and nut crops are needed because target pests often display decreased susceptibility to chemical controls due to overreliance on a handful of active ingredients and regulatory issues. As an alternative to chemical controls, entomopathogenic fungi could be utilized as biological control agents to manage insect pest populations. However, development of field ready products is hampered by a lack of basic knowledge. Development of field ready products requires collecting, screening, and characterizing a greater variety of potential entomopathogenic fungal species and strains. Creation of a standardized research framework to study entomopathogenic fungi will aid in identifying the potential mechanisms of biological control activity that fungi could possess, including antibiotic metabolite production; strains and species best suited to survive in different climates and agroecosystems; and optimized combinations of entomopathogenic fungi and novel formulations. This mini review therefore discusses strategies to collect and characterize new entomopathogenic strains, test different potential mechanisms of biocontrol activity, examine ability of different species and strains to tolerate different climates, and lastly how to utilize this information to develop strains into products for growers.

由于过度依赖少数活性成分和监管问题,目标害虫往往对化学防治的敏感性降低,因此需要采用新的策略来控制多年生水果和坚果作物中的害虫。作为化学防治的替代品,昆虫病原真菌可用作生物防治剂来控制害虫数量。然而,由于缺乏基础知识,田间现成产品的开发受到阻碍。开发可在田间使用的产品需要收集、筛选和鉴定更多潜在的昆虫病原真菌种类和菌株。建立研究昆虫病原真菌的标准化研究框架将有助于确定真菌可能具有的生物防治活性机制,包括抗生素代谢物的产生;最适合在不同气候和农业生态系统中生存的菌株和物种;以及昆虫病原真菌和新型制剂的优化组合。因此,这篇小型综述讨论了收集和鉴定新的昆虫病原菌菌株、测试生物防治活动的不同潜在机制、研究不同物种和菌株耐受不同气候的能力,以及如何利用这些信息将菌株开发成产品供种植者使用的策略。
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引用次数: 0
Editorial: Insights into fungal biology with emphasis on pathogenesis in humans. 社论:对真菌生物学的见解,重点是人类的致病机理。
IF 2.1 Q3 MYCOLOGY Pub Date : 2024-07-02 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1438060
Angel Gonzalez, Marilene Henning Vainstein, Patrícia Albuquerque, Ildinete Silva-Pereira
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引用次数: 0
Molecular cloning, expression, and purification, along with in silico epitope analysis of recombinant enolase proteins (a potential vaccine candidate) from Candida albicans and Candida auris. 对来自白色念珠菌和白色念珠菌的重组烯醇化酶蛋白(潜在候选疫苗)进行分子克隆、表达、纯化和表位分析。
Q3 MYCOLOGY Pub Date : 2024-05-31 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1399546
Manisha Shukla, Rohit Singh, Pankaj Chandley, Soma Rohatgi

Candida albicans is the predominant cause of systemic candidiasis, although other non albicans Candida species are progressively becoming more widespread nowadays. Candida auris has emerged as a deadly multidrug-resistant fungal pathogen, posing a significant threat to global public health. In the absence of effective antifungal therapies, the development of a vaccine against C. auris infections is imperative. Enolase, a key glycolytic enzyme, has emerged as a promising vaccine candidate due to its immunogenic properties and essential role in fungal virulence. Herein, full-length Enolase gene sequences from C. albicans and C. auris were cloned into suitable expression vector and transformed into Escherichia coli expression hosts. Recombinant Enolase proteins were successfully expressed and purified using affinity chromatography under native conditions, followed by SDS-PAGE characterization and Western blot analysis. CD spectroscopy verified the existence of expressed proteins in soluble native conformation. Preliminary in silico studies verified the immunogenicity of recombinant Enolase proteins isolated from both C. albicans and C. auris. Furthermore, bioinformatics analysis revealed conserved B-cell and T-cell epitopes across C. albicans and C. auris Enolase proteins, suggesting potential cross-reactivity and broad-spectrum vaccine efficacy. Our findings are anticipated to play a role in advancing therapeutic as well as diagnostic strategies against systemic candidiasis.

白念珠菌是全身性念珠菌病的主要致病菌,但如今其他非白念珠菌属的念珠菌也逐渐广泛传播。白色念珠菌已成为一种致命的耐多药真菌病原体,对全球公共卫生构成重大威胁。在缺乏有效抗真菌疗法的情况下,开发针对念珠菌感染的疫苗势在必行。烯醇化酶是一种关键的糖酵解酶,由于其免疫原性和在真菌毒力中的重要作用,它已成为一种有希望的候选疫苗。在此,我们将白僵菌和法氏囊菌的全长烯醇化酶基因序列克隆到合适的表达载体中,并将其转化到大肠杆菌表达宿主中。重组烯醇化酶蛋白被成功表达,并在原生条件下使用亲和层析法纯化,随后进行了SDS-PAGE表征和Western印迹分析。CD 光谱分析验证了表达的蛋白质以可溶性原生构象存在。初步的硅学研究验证了从白喉杆菌和白喉杆菌中分离出来的重组烯醇化酶蛋白的免疫原性。此外,生物信息学分析表明,白僵菌酵素酶蛋白和阿氏杆菌酵素酶蛋白的B细胞和T细胞表位是一致的,这表明它们可能具有交叉反应性和广谱疫苗功效。预计我们的研究结果将在推进系统性念珠菌病的治疗和诊断策略方面发挥作用。
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引用次数: 0
Fungal biomass and ectomycorrhizal community assessment of phosphorus responsive Pinus taeda plantations. 对磷响应性尾叶松种植园进行真菌生物量和外生菌根群落评估。
Q3 MYCOLOGY Pub Date : 2024-05-28 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1401427
Jacob Hackman, Alex Woodley, David Carter, Brian Strahm, Collin Averill, Rytas Vilgalys, Kevin Garcia, Rachel Cook

Ectomycorrhizal fungi and non-ectomycorrhizal fungi are responsive to changes in environmental and nutrient availabilities. Although many species of ectomycorrhizas are known to enhance the uptake of phosphorus and other nutrients for Pinus taeda, it is not understood how to optimize these communities to have tangible effects on plantation silviculture and P use efficiency. The first step of this process is the identification of native fungi present in the system that are associated with P. taeda and influence P uptake efficiency. We used sand-filled mesh bags baited with finely ground apatite to sample ectomycorrhizal and non-ectomycorrhizal fungi associated with the rhizosphere of P-responsive P. taeda under several field conditions. Mesh bags were assessed for biomass accumulation over three years using a single three-month burial period pre-harvest and three six-month burial periods post-planting. Amplicon sequencing assessed ectomycorrhizal and non-ectomycorrhizal communities between phosphorus treatments, sites, mesh bags, and the rhizosphere of actively growing P. taeda in the field. We found biomass accumulation within the mesh bags was inversely related to increasing phosphorus fertilization (carryover) rates from pre-harvest to post-planting. Up to 25% increases in total biomass within the bags were observed for bags baited with P. Taxonomic richness was highest in Alfisol soils treated with phosphorus from the previous rotation and lowest in the Spodosol regardless of phosphorus treatment.

外生菌根真菌和非外生菌根真菌对环境和养分供应的变化反应灵敏。虽然已知许多种外生菌根真菌能提高太田松对磷和其他养分的吸收,但如何优化这些群落,使其对人工林造林和钾利用效率产生切实影响,目前尚不清楚。这一过程的第一步是确定系统中存在的与泰达松相关并影响钾吸收效率的本地真菌。我们使用装有细磨磷灰石饵料的装沙网袋,在几种田间条件下对与对钾有反应的泰达红豆杉根圈相关的外生菌根真菌和非外生菌根真菌进行采样。通过采收前一次为期三个月的掩埋和种植后三次为期六个月的掩埋,对网袋三年的生物量积累进行了评估。扩增子测序评估了磷处理、地点、网袋和田间生长旺盛的泰达红豆杉根圈之间的外生菌根和非外生菌根群落。我们发现,从收获前到种植后,网袋内生物量的积累与磷肥施用量(结转)的增加成反比。无论磷肥处理方式如何,上一轮轮作中施用磷肥的 Alfisol 土壤中的分类丰富度最高,而 Spodosol 土壤中的分类丰富度最低。
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引用次数: 0
A Bacillus velezensis strain shows antimicrobial activity against soilborne and foliar fungi and oomycetes. 一种 Velezensis 杆菌菌株对土传真菌、叶面真菌和卵菌具有抗菌活性。
IF 2.1 Q3 MYCOLOGY Pub Date : 2024-02-23 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1332755
Anna Wockenfuss, Kevin Chan, Jessica G Cooper, Timothy Chaya, Megan A Mauriello, Sarah M Yannarell, Julia A Maresca, Nicole M Donofrio

Biological control uses naturally occurring antagonists such as bacteria or fungi for environmentally friendly control of plant pathogens. Bacillus spp. have been used for biocontrol of numerous plant and insect pests and are well-known to synthesize a variety of bioactive secondary metabolites. We hypothesized that bacteria isolated from agricultural soil would be effective antagonists of soilborne fungal pathogens. Here, we show that the Delaware soil isolate Bacillus velezensis strain S4 has in vitro activity against soilborne and foliar plant pathogenic fungi, including two with a large host range, and one oomycete. Further, this strain shows putative protease and cellulase activity, consistent with our prior finding that the genome of this organism is highly enriched in antifungal and antimicrobial biosynthetic gene clusters. We demonstrate that this bacterium causes changes to the fungal and oomycete hyphae at the inhibition zone, with some of the hyphae forming bubble-like structures and irregular branching. We tested strain S4 against Magnaporthe oryzae spores, which typically form germ tubes and penetration structures called appressoria, on the surface of the leaf. Our results suggest that after 12 hours of incubation with the bacterium, fungal spores form germ tubes, but instead of producing appressoria, they appear to form rounded, bubble-like structures. Future work will investigate whether a single antifungal molecule induces all these effects, or if they are the result of a combination of bacterially produced antimicrobials.

生物防治利用细菌或真菌等天然拮抗剂对植物病原体进行环境友好型控制。芽孢杆菌属已被用于对多种植物和昆虫害虫进行生物防治,而且众所周知,它们能合成多种具有生物活性的次级代谢产物。我们假设,从农业土壤中分离出来的细菌将成为土传真菌病原体的有效拮抗剂。在这里,我们发现特拉华州土壤中分离出的芽孢杆菌 S4 菌株对土传和叶传植物致病真菌具有体外活性,其中包括两种寄主范围较大的真菌和一种卵菌。此外,该菌株还显示出潜在的蛋白酶和纤维素酶活性,这与我们之前发现的该生物体基因组中抗真菌和抗微生物生物合成基因簇的高度富集是一致的。我们证明,这种细菌会导致抑制区的真菌和卵菌菌丝发生变化,其中一些菌丝会形成气泡状结构和不规则分枝。我们对菌株 S4 进行了针对木格诺氏菌孢子的测试,这种孢子通常会在叶片表面形成芽管和称为附着体的穿透结构。我们的结果表明,真菌孢子在与该细菌培养 12 小时后,会形成芽管,但不会产生附着体,而是形成圆形的气泡状结构。未来的工作将研究是单一的抗真菌分子诱导了所有这些效应,还是细菌产生的抗菌剂共同作用的结果。
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引用次数: 0
Healthcare-associated fungal infections and emerging pathogens during the COVID-19 pandemic. COVID-19 大流行期间与医疗保健相关的真菌感染和新出现的病原体。
Q3 MYCOLOGY Pub Date : 2024-02-23 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1339911
Krish Shah, Mukund Deshpande, P Shah

Historically, fungi were mainly identified as plant and insect pathogens since they grow at 28°C. At the same time, bacteria are known to be the most common human pathogens as they are compatible with the host body temperature of 37°C. Because of immunocompromised hosts, cancer therapy, and malnutrition, fungi are rapidly gaining attention as human pathogens. Over 150 million people have severe fungal infections, which lead to approximately more than one million deaths per year. Moreover, diseases like cancer involving long-term therapy and prophylactic use of antifungal drugs in high-risk patients have increased the emergence of drug-resistant fungi, including highly virulent strains such as Candida auris. This clinical spectrum of fungal diseases ranges from superficial mucocutaneous lesions to more severe and life-threatening infections. This review article summarizes the effect of hospital environments, especially during the COVID-19 pandemic, on fungal infections and emerging pathogens. The review also provides insights into the various antifungal drugs and their existing challenges, thereby driving the need to search for novel antifungal agents.

一直以来,真菌主要被认为是植物和昆虫的病原体,因为它们在 28 摄氏度下生长。与此同时,众所周知,细菌是最常见的人类病原体,因为它们与 37°C 的宿主体温相适应。由于宿主免疫力低下、癌症治疗和营养不良等原因,真菌作为人类病原体正迅速受到关注。超过 1.5 亿人患有严重的真菌感染,每年导致约 100 多万人死亡。此外,癌症等疾病需要长期治疗,高危患者需要预防性使用抗真菌药物,这也增加了耐药性真菌的出现,其中包括白色念珠菌等高致病性菌株。真菌疾病的临床范围从浅表皮肤粘膜病变到更严重和危及生命的感染。这篇综述文章总结了医院环境对真菌感染和新病原体的影响,尤其是在 COVID-19 大流行期间。该综述还深入探讨了各种抗真菌药物及其现有挑战,从而推动了寻找新型抗真菌药物的需求。
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引用次数: 0
Editorial: Endophytic fungi producers of biomolecules of interest to human health. 社论:内生真菌生产对人类健康有益的生物大分子。
Q3 MYCOLOGY Pub Date : 2024-01-30 eCollection Date: 2024-01-01 DOI: 10.3389/ffunb.2024.1239470
Pérola O Magalhães, João Vicente Braga de Souza, Danilo Batista Pinho
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引用次数: 0
Utilization of Metarhizium as an insect biocontrol agent and a plant bioinoculant with special reference to Brazil 利用 Metarhizium 作为昆虫生物控制剂和植物生物接种剂,特别是在巴西
Q3 MYCOLOGY Pub Date : 2023-12-21 DOI: 10.3389/ffunb.2023.1276287
E. Mesquita, Shasha Hu, Tais B. Lima, P. Gôlo, M. Bidochka
Brazil has a long history of using biological control and has the largest program in sugarcane agriculture to which a biocontrol program has been applied. This achievement is at least partly due to the utilization of the entomopathogenic fungus Metarhizium. This well-known fungal genus exhibits pathogenicity against a broad range of arthropod hosts and has been used globally as a biocontrol agent. This fungus is also a root symbiont, and in this capacity, it is a plant growth promoter. However, this feature (i.e., as a plant symbiont) has yet to be fully explored and implemented in Brazil, although the number of reports demonstrating Metarhizium’s utility as a plant bioinoculant is increasing. The Brazilian bioproduct industry targets agricultural pests, and is limited to two Metarhizium species represented by four fungal isolates as active ingredients. Entomopathogenic fungi have also been successful in controlling arthropods of public health concern, as shown in their control of mosquitoes, which are vectors of diseases. The isolation of new indigenous Metarhizium isolates from a variety of substrates such as soil, insects, and plants shows the wide genetic diversity within this fungal genus. In this review, we emphasize the significance of Metarhizium spp. for the biological control of insects in Brazil. We also suggest that the experience and success of biological control with fungi in Brazil is an important resource for developing integrated pest management and sustainable strategies for pest control worldwide. Moreover, the future implementation prospects of species of Metarhizium being used as bioinoculants and possible new advances in the utility of this fungus are discussed.
巴西使用生物防治的历史悠久,是甘蔗农业中使用生物防治计划最多的国家。这一成就至少部分归功于对昆虫病原真菌 Metarhizium 的利用。这种著名的真菌属对多种节肢动物宿主具有致病性,已被全球用作生物控制剂。这种真菌也是根系的共生体,因此能促进植物生长。不过,尽管证明 Metarhizium 可用作植物生物接种剂的报告数量正在增加,但巴西尚未充分探索和实施这一特性(即作为植物共生体)。巴西的生物产品产业以农业害虫为目标,其有效成分仅限于以四种真菌分离物为代表的两种 Metarhizium。昆虫病原真菌也成功地控制了与公共卫生有关的节肢动物,如对疾病传播媒介蚊子的控制。从土壤、昆虫和植物等多种基质中分离出新的本地 Metarhizium 分离物,显示了该真菌属内部广泛的遗传多样性。在这篇综述中,我们强调了 Metarhizium 对巴西昆虫生物防治的重要意义。我们还认为,巴西在利用真菌进行生物防治方面的经验和成功,是全球虫害综合治理和可持续虫害防治战略发展的重要资源。此外,我们还讨论了将 Metarhizium 菌种用作生物接种剂的未来实施前景,以及这种真菌的用途可能取得的新进展。
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引用次数: 0
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. 相关细菌群落、对抗研究和比较基因组学揭示了莫切莱氏菌与假单胞菌属之间的重要相互作用。
Q3 MYCOLOGY Pub Date : 2023-12-13 DOI: 10.3389/ffunb.2023.1285531
G. Cailleau, Buck T. Hanson, Melissa Cravero, Sami Zhioua, Patrick Hilpish, Celia Ruiz, Aaron J. Robinson, Julia M. Kelliher, Demosthenes P Morales, La Verne Gallegos-Graves, Gregory Bonito, P. S. Chain, S. Bindschedler, Pilar Junier
Members of the fungal genus Morchella are widely known for their important ecological roles and significant economic value. In this study, we used amplicon and genome sequencing to characterize bacterial communities associated with sexual fruiting bodies from wild specimens, as well as vegetative mycelium and sclerotia obtained from Morchella isolates grown in vitro. These investigations included diverse representatives from both Elata and Esculenta Morchella clades. Unique bacterial community compositions were observed across the various structures examined, both within and across individual Morchella isolates or specimens. However, specific bacterial taxa were frequently detected in association with certain structures, providing support for an associated core bacterial community. Bacteria from the genus Pseudomonas and Ralstonia constituted the core bacterial associates of Morchella mycelia and sclerotia, while other genera (e.g., Pedobacter spp., Deviosa spp., and Bradyrhizobium spp.) constituted the core bacterial community of fruiting bodies. Furthermore, the importance of Pseudomonas as a key member of the bacteriome was supported by the isolation of several Pseudomonas strains from mycelia during in vitro cultivation. Four of the six mycelial-derived Pseudomonas isolates shared 16S rDNA sequence identity with amplicon sequences recovered directly from the examined fungal structures. Distinct interaction phenotypes (antagonistic or neutral) were observed in confrontation assays between these bacteria and various Morchella isolates. Genome sequences obtained from these Pseudomonas isolates revealed intriguing differences in gene content and annotated functions, specifically with respect to toxin-antitoxin systems, cell adhesion, chitinases, and insecticidal toxins. These genetic differences correlated with the interaction phenotypes. This study provides evidence that Pseudomonas spp. are frequently associated with Morchella and these associations may greatly impact fungal physiology.
真菌莫氏菌属的成员因其重要的生态作用和巨大的经济价值而广为人知。在这项研究中,我们使用扩增子和基因组测序技术,分析了与野生标本有性子实体相关的细菌群落,以及从离体生长的莫氏菌分离物中获得的无性菌丝和硬菌。这些研究涵盖了莫切拉氏菌 Elata 支系和 Esculenta 支系的各种代表菌。在所研究的各种结构中,都观察到了独特的细菌群落组成,包括在单个莫氏菌分离物或标本内部和之间。不过,在某些结构中经常检测到特定的细菌类群,这为相关的核心细菌群落提供了支持。假单胞菌属(Pseudomonas)和雷氏菌属(Ralstonia)的细菌构成了莫氏菌菌丝体和硬核菌的核心细菌群落,而其他菌属(如Pedobacter属、Deviosa属和Bradyrhizobium属)则构成了子实体的核心细菌群落。此外,在离体培养过程中从菌丝体中分离出的几株假单胞菌也证明了假单胞菌作为细菌群落关键成员的重要性。从菌丝体中分离出的六株假单胞菌中,有四株的 16S rDNA 序列与直接从受检真菌结构中回收的扩增子序列具有相同性。在这些细菌与各种莫切拉氏菌分离物的对抗试验中观察到了不同的相互作用表型(拮抗或中性)。从这些假单胞菌分离物中获得的基因组序列揭示了基因内容和注释功能方面的惊人差异,特别是在毒素-抗毒素系统、细胞粘附性、几丁质酶和杀虫毒素方面。这些基因差异与相互作用表型相关。这项研究提供的证据表明,假单胞菌属经常与莫切拉菌发生关联,而这些关联可能会对真菌的生理学产生重大影响。
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引用次数: 0
Prevalence of groundnut dry root rot (Macrophomina phaseolina (Tassi) Goid.) and its pathogenic variability in Southern India 印度南部花生干根腐病(Macrophomina phaseolina (Tassi) Goid.)的流行及其病原变异性
Q3 MYCOLOGY Pub Date : 2023-12-04 DOI: 10.3389/ffunb.2023.1189043
Prince Jayasimha Pamala, R. S. Jayalakshmi, K. Vemana, G. M. Naidu, R. Varshney, Hari Kishan Sudini
Macrophomina phaseolina is the most devastating and emerging threat to groundnut production in India. An increase in average temperature and inconsistent rainfalls resulting from changing climatic conditions are strongly believed to aggravate the disease and cause severe yield losses. The present study aims to conduct a holistic survey to assess the prevalence and incidence of dry root rot of groundnut in major groundnut growing regions of Southern India, viz., Andhra Pradesh, Telangana, Karnataka, and Tamil Nadu. Furthermore, the pathogenic variability was determined using different assays such as morphological, cultural, pathogenic, and molecular assays. Results indicate that disease incidence in surveyed locations ranged from 8.06 to 20.61%. Both temperature and rainfall played a major role in increasing the disease incidence. The pathogenic variability of M. phaseolina isolates differed significantly, based on the percent disease incidence induced on cultivars of JL-24 groundnut and K-6 groundnut. Morphological variations in terms of growth pattern, culture color, sclerotia number, and sclerotia size were observed. The molecular characterization of M. phaseolina isolates done by ITS rDNA region using ITS1 and ITS4 primers yielded approximately 600 bp PCR amplicons, sequenced and deposited in GenBank (NCBI). Molecular variability analysis using SSR primers indicated the genetic variation among the isolates collected from different states. The present investigation revealed significant variations in pathogenic variability among isolates of M. phaseolina and these may be considered important in disease management and the development of resistant cultivars against groundnut dry root rot disease.
在印度,菜豆大蠹是对花生生产最具破坏性和新出现的威胁。人们强烈认为,气候条件变化导致的平均气温升高和降雨不稳定会加剧这种疾病,造成严重的产量损失。本研究旨在进行一项全面调查,以评估印度南部主要花生种植区,即安得拉邦、特伦甘纳邦、卡纳塔克邦和泰米尔纳德邦花生干根腐病的患病率和发病率。此外,采用不同的检测方法,如形态学、文化、致病性和分子检测来确定致病变异性。结果调查地点的发病率为8.06 ~ 20.61%。气温和降雨对发病率的增加起主要作用。从JL-24花生和K-6花生品种的致病率来看,菜豆分枝杆菌分离株的致病变异性存在显著差异。在生长模式、培养颜色、菌核数量和菌核大小方面观察到形态学变化。利用ITS1和ITS4引物对菜绿分枝杆菌的ITS rDNA区进行分子鉴定,得到约600 bp的PCR扩增片段,测序并存入GenBank (NCBI)。利用SSR引物进行分子变异分析,发现不同产地分离物间存在遗传变异。本研究揭示了花生干根腐病分离株间致病变异的显著差异,这可能对疾病管理和开发抗花生干根腐病品种具有重要意义。
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引用次数: 0
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Frontiers in fungal biology
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