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Research on the impact of graphene oxide in feed on growth and health parameters in calves. 饲料中氧化石墨烯对犊牛生长和健康参数影响的研究。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-30 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1560078
Tereza Aulichova, Sylvie Skalickova, Kopec Tomas, Pompido Chilala, Pavel Horky

Mycotoxins, as feed contaminants, pose serious health risks and cause significant economic losses on farms. The selection of an appropriate and effective adsorbent remains a key challenge for many researchers. Graphene oxide (GO) and its derivatives have garnered interest due to their exceptional physicochemical properties. However, the increasing use of GO necessitates a thorough investigation into its potential toxic impacts on animal and human health, as well as the environment. This study evaluates the effects of GO as a feed additive on calf health. Ten calves (100 ± 6 kg) participated in a 20-day experiment: five in the control group (C) and five in the experimental group (T). The control group (C) received feed without GO, while the experimental group (T) was fed a diet containing 30 g of GO/kg/day. Key parameters evaluated included growth performance, biochemical markers (ALT, AST, ALP), and mineral levels (Ca, P, Mg, K, Na, Cl, Fe, Cu, Zn). The average weight gain was 16.20 ± 0.32 kg in the control group and 15.40 ± 0.26 kg in the GO group, with no statistically significant difference (p > 0.05). Calves fed GO-enriched feed exhibited significant reductions in Fe (p = 0.041) and Zn (p = 0.0006) levels, while Mg increased significantly in the control group (p = 0.029). Liver parameters in group T showed significant increases in ALT (p = 0.022), AST (p = 0.027), and ALP (p = 0.015) after 20 days. Additionally, GPx activity was significantly decreased in the GO group (p = 0.011). These results suggest that GO at a dose of 30 g/kg/day in feed can negatively affect calf health.

真菌毒素作为饲料污染物,对健康构成严重威胁,并给养殖场造成重大经济损失。选择合适而有效的吸附剂仍然是许多研究人员面临的关键挑战。氧化石墨烯(GO)及其衍生物由于其特殊的物理化学性质而引起了人们的兴趣。然而,随着氧化石墨烯使用量的增加,有必要对其对动物和人类健康以及环境的潜在毒性影响进行彻底调查。本研究评估氧化石墨烯作为饲料添加剂对犊牛健康的影响。10头犊牛(100±6 kg)参加为期20天的试验:对照组5头(C),试验组5头(T)。对照组(C)饲喂不添加氧化石墨烯的饲料,试验组(T)饲喂添加30 g氧化石墨烯/kg/d的饲粮。评估的关键参数包括生长性能、生化指标(ALT、AST、ALP)和矿物质水平(Ca、P、Mg、K、Na、Cl、Fe、Cu、Zn)。对照组平均增重16.20±0.32 kg,氧化石墨烯组平均增重15.40±0.26 kg,差异无统计学意义(p < 0.05)。富氧化石墨烯饲料显著降低了犊牛铁(p = 0.041)和锌(p = 0.0006)水平,显著提高了Mg (p = 0.029)水平。20 d后,T组肝脏各项指标ALT (p = 0.022)、AST (p = 0.027)、ALP (p = 0.015)均显著升高。此外,氧化石墨烯组GPx活性显著降低(p = 0.011)。这些结果表明,饲料中添加30 g/kg/天的氧化石墨烯会对犊牛健康产生负面影响。
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引用次数: 0
Cadmium decreases human gingival fibroblast viability and induces pro-inflammatory response associated with Akt and MAPK pathway activation. 镉降低人牙龈成纤维细胞活力,诱导与Akt和MAPK通路激活相关的促炎反应。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-23 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1583865
Tipparat Parakaw, Sirada Srihirun, Nathawut Sibmooh, Nisarat Ruangsawasdi, Phisit Khemawoot, Pornpun Vivithanaporn

Smoking and particulate matter 2.5 (PM2.5) expose millions to cadmium (Cd), a toxic heavy metal linked to pro-inflammatory responses, oxidative stress, and disease pathogenesis. In the oral cavity, chronic Cd exposure contributes to the progression of periodontal diseases and oral cancers. However, the direct effect of Cd on oral tissues and the underlying mechanisms remains unclear. This study explored the impact of environmentally relevant concentrations of Cd on human gingival fibroblasts (HGFs) by evaluating cell viability, pro-inflammatory cytokine secretion (IL-6 and IL-8), COX-2 expression, and the activation of key signaling pathways: Akt, ERK1/2, and JNK. Cd exposure significantly reduced HGF viability, elevated IL-6 and IL-8 secretion, and upregulated COX-2 expression. These effects were attenuated by inhibitors targeting Akt, ERK1/2, and JNK pathways. By integrating cytokine profiling, COX-2 expression, and inhibitor-based pathway analysis, our study provides mechanistic insights into how low-level Cd exposure triggers early inflammatory responses in gingival fibroblasts. Our findings reveal that Cd exerts pro-inflammatory and cytotoxic effects on HGFs, which may play a role as one of the factors in the pathogenesis of smoking-related oral diseases. Targeting Akt, ERK1/2, and JNK signaling pathways could offer therapeutic strategies to attenuate Cd-induced oral pro-inflammatory responses and tissue damage.

吸烟和颗粒物2.5 (PM2.5)使数百万人暴露于镉(Cd),这是一种与促炎反应、氧化应激和疾病发病机制有关的有毒重金属。在口腔中,慢性Cd暴露有助于牙周病和口腔癌的进展。然而,Cd对口腔组织的直接影响及其潜在机制尚不清楚。本研究通过评估细胞活力、促炎细胞因子分泌(IL-6和IL-8)、COX-2表达以及关键信号通路Akt、ERK1/2和JNK的激活,探讨环境相关浓度Cd对人牙龈成纤维细胞(HGFs)的影响。Cd暴露显著降低HGF活力,升高IL-6和IL-8分泌,上调COX-2表达。这些作用被靶向Akt、ERK1/2和JNK通路的抑制剂减弱。通过整合细胞因子分析、COX-2表达和基于抑制剂的途径分析,我们的研究提供了低水平Cd暴露如何引发牙龈成纤维细胞早期炎症反应的机制见解。我们的研究结果表明,Cd对HGFs具有促炎和细胞毒性作用,这可能是吸烟相关口腔疾病发病的因素之一。靶向Akt、ERK1/2和JNK信号通路可以提供减轻cd诱导的口腔促炎反应和组织损伤的治疗策略。
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引用次数: 0
A deep-learning approach to predict reproductive toxicity of chemicals using communicative message passing neural network. 一种利用交流信息传递神经网络预测化学品生殖毒性的深度学习方法。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-22 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1640612
Owen He, Daoxing Chen, Yimei Li

Reproductive toxicity is a concern critical to human health and chemical safety assessment. Recently, the U.S. Food and Drug Administration announced plans to assess toxicity with artificial intelligence-based computational models instead of animal studies in "a win-win for public health and ethics." In this study, we used a reproductive toxicity dataset using Simplified Molecular Input Line Entry Specifications (SMILES) to represent 1091 reproductively toxic and 1063 non-toxic small-molecule compounds. A repeated nested cross-validation procedure was applied, in which the dataset was randomly partitioned into five distinct folds in the outer loop, each time, one fold serving as the test set. In the inner loop, a similar procedure was also repeated five times, with 12.5% each time serving as the validation set. We first evaluated the performance of classical machine learning (ML) methods such as Random Forest and Extreme Gradient Boosting on predicting reproductive toxicity, using standard model evaluation metrics including accuracy score (ACC), the area under the curve (AUC) of the receiver operating characteristics curve (ROC) and F1 score. Our analyses indicate that these methods' overall results were mediocre and insufficient for high-throughput screening. To overcome these limitations, we adopted the Communicative Message Passing Neural Network (CMPNN) framework, which incorporates a communicative kernel and a message booster module. Our results show that our ReproTox-CMPNN model outperforms the current best baselines in both embedding quality and predictive accuracy. In independent test sets, ReproTox-CMPNN achieved a mean AUC of 0.946, ACC of 0.857 and F1 score of 0.846, surpassing traditional algorithms to establish itself as a new state-of-the-art model in this field. These findings demonstrate that CMPNN's deep capture of multi-level molecular relationships offers an efficient and reliable computational tool for rapid chemical safety screening and risk assessment.

生殖毒性是一个对人类健康和化学品安全评估至关重要的问题。最近,美国食品和药物管理局宣布计划用基于人工智能的计算模型来评估毒性,而不是动物研究,这是“公共卫生和道德的双赢”。在这项研究中,我们使用了一个使用简化分子输入线输入规范(SMILES)的生殖毒性数据集来代表1091种生殖毒性和1063种无毒的小分子化合物。应用重复嵌套交叉验证程序,其中数据集在外部循环中随机划分为五个不同的折叠,每次折叠一个作为测试集。在内部循环中,类似的过程也重复了五次,每次使用12.5%作为验证集。我们首先使用标准模型评估指标,包括准确性评分(ACC)、受试者工作特征曲线(ROC)曲线下面积(AUC)和F1评分,评估了随机森林和极端梯度增强等经典机器学习(ML)方法在预测生殖毒性方面的性能。我们的分析表明,这些方法的总体结果一般,不足以进行高通量筛选。为了克服这些限制,我们采用了通信消息传递神经网络(CMPNN)框架,该框架包含一个通信内核和一个消息增强模块。我们的结果表明,我们的ReproTox-CMPNN模型在嵌入质量和预测精度方面都优于目前最好的基线。在独立测试集中,ReproTox-CMPNN的平均AUC为0.946,ACC为0.857,F1得分为0.846,超越了传统算法,成为该领域最先进的新模型。这些发现表明,CMPNN对多层次分子关系的深入捕捉为快速化学品安全筛选和风险评估提供了一种高效可靠的计算工具。
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引用次数: 0
Stress convulsions in rodents: within a weight-of-evidence framework for human seizure risk. 啮齿动物的应激性惊厥:在人类癫痫发作风险的证据权重框架内。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-17 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1600816
Joseph J DeGeorge, Monica R Metea

In research settings, rodents exhibit a well-documented sensitivity to stress-induced behavioral alterations ranging from stereotypy to convulsions. These events complicate preclinical drug safety assessments where establishing a No-Observed-Effect Level (NOEL) requires distinguishing true pharmacologic seizures from stress-related convulsions, including a type lacking electrographic cortical correlates, referred to as psychogenic nonepileptic seizures (PNES). Stress triggers in preclinical settings include environmental factors and systemic conditioning effects of investigational drugs unrelated to seizure risk. Stress-induced behaviors can bias safety assessments by creating false-positive findings of seizure liability incorrectly attributed to the test compound. This paper highlights situations when stress conditioning is present during rodent seizure liability studies and proposes a Weight-of-Evidence (WoE) approach to differentiate between drug-induced ES and stress-conditioned PNES. It supports applying context-specific criteria for regulatory considerations especially when convulsions are absent in higher species, when there are inconsistent findings across facilities, and when rodents present stereotypy and lack of neuropathological evidence of drug-induced seizures. This approach aims to minimize the misinterpretation of stress-related artifacts as true pharmacologic seizures, providing a framework for more reliable and translatable seizure liability assessments.

在研究环境中,啮齿类动物对压力引起的行为改变表现出充分的敏感性,从刻板印象到抽搐。这些事件使临床前药物安全性评估复杂化,建立无观察效应水平(NOEL)需要区分真正的药理学发作与压力相关的抽搐,包括一种缺乏电图皮质相关的类型,称为心因性非癫痫性发作(PNES)。临床前应激触发因素包括环境因素和与癫痫发作风险无关的研究药物的系统调节效应。压力诱发的行为会产生错误地归因于测试化合物的癫痫发作风险的假阳性结果,从而使安全性评估产生偏差。本文重点介绍了啮齿动物癫痫发作风险研究中出现应激条件的情况,并提出了一种证据权重(WoE)方法来区分药物诱导的ES和应激条件下的PNES。它支持应用特定环境的标准进行监管考虑,特别是当高等物种没有抽搐时,当不同设施的发现不一致时,以及当啮齿类动物表现出刻板印象和缺乏药物引起的癫痫发作的神经病理学证据时。该方法旨在最大限度地减少对压力相关的工件作为真正的药理学癫痫发作的误解,为更可靠和可翻译的癫痫发作责任评估提供框架。
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引用次数: 0
Chain length-dependent mitochondrial toxicity of perfluoroalkyl carboxylic acids: insights from Mito Tox Index evaluation. 全氟烷基羧酸的链长依赖性线粒体毒性:来自水户毒素指数评估的见解。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-15 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1582891
Yoonseok Kam, Lisa Winer, Natalia Romero

Introduction: Per- and polyfluoroalkyl substances (PFAS) are persistent environmental contaminants that accumulate in living organisms, posing significant human health risks. The toxicity mechanisms of PFAS include mitochondrial dysfunction and bioenergetic failure.

Methods: This study evaluates the structure-activity relationship of PFAS compounds with mitochondrial toxicity by comparing the Mito Tox Index (MTI) of perfluoroalkyl carboxylic acids (PFCAs) varying carbon chain lengths. The MTI quantifies the extent to which substances disrupt mitochondrial function by distinguishing between mitochondrial inhibition and uncoupling. This was followed by an assessment of the effect of PFCAs on total cellular bioenergetics and impedance-based real time cell viability measurement.

Results and discussion: Both inhibition and uncoupling MTI values increased with the chain length of PFCAs and severe mitochondrial inhibition was observed when uncoupling was maximized by PFCAs containing seven or more carbons within hours of exposure. The mitochondrial toxicity corresponded well to the bioenergetic failure measured by real-time ATP production rates. In contrast, there was a substantial difference between cytotoxicity and mitochondrial toxicity, despite a common trend of increased toxicity with longer chain lengths. The results suggest that PFCA-induced mitochondrial dysfunction is a key mechanism of PFAS-mediated cellular damage, primarily driven by proton leak-mediated ETC uncoupling, leading to impaired mitochondrial energy production. It also implies that MTI-based mitochondrial toxicity evaluation increases data precision in comparing PFAS effects on mitochondrial function, even identifying the mode of action, which is expected to improve in vitro toxicity prediction models.

导言:全氟和多氟烷基物质(PFAS)是在生物体中积累的持久性环境污染物,对人类健康构成重大风险。PFAS的毒性机制包括线粒体功能障碍和生物能量衰竭。方法:通过比较不同碳链长度的全氟烷基羧酸(PFCAs)的Mito Tox指数(MTI),评价PFAS化合物与线粒体毒性的构效关系。MTI通过区分线粒体抑制和解偶联来量化物质破坏线粒体功能的程度。随后评估PFCAs对总细胞生物能量学和基于阻抗的实时细胞活力测量的影响。结果和讨论:抑制和解偶联的MTI值随着PFCAs链长的增加而增加,当暴露数小时内含有7个或更多碳的PFCAs使解偶联最大化时,观察到严重的线粒体抑制。线粒体毒性与实时ATP生成率测量的生物能量衰竭相吻合。相比之下,细胞毒性和线粒体毒性之间存在实质性差异,尽管具有随着链长度增加毒性的共同趋势。结果表明,pfca诱导的线粒体功能障碍是pfca介导的细胞损伤的关键机制,主要由质子泄漏介导的ETC解偶联驱动,导致线粒体能量产生受损。这也意味着基于mti的线粒体毒性评估提高了比较PFAS对线粒体功能影响的数据精度,甚至确定了作用方式,这有望改善体外毒性预测模型。
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引用次数: 0
Subchronic effects of HgCl2 on cognitive function and central inflammation in type 2 diabetic rats: involvement of BDNF and acetylcholinesterase. HgCl2对2型糖尿病大鼠认知功能和中枢炎症的亚慢性影响:BDNF和乙酰胆碱酯酶的参与
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-14 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1610720
Douae Benloughmari, Samir Bikri, Meriam El Aboubi, Fatima-Zahra Yassif, Youssef Aboussaleh

Introduction: Type 2 diabetes mellitus (T2DM) is a major global health concern frequently related with chronic low-grade inflammation and a spectrum of cognitive impairments, including deficits in learning and memory. Mercury chloride (HgCl2), a widespread environmental pollutant, is recognized for its neurotoxic properties and its capacity to trigger inflammatory responses, particularly in patients with metabolic disorders such as T2DM.

Aim: This study aimed to evaluate the subchronic effects of HgCl2 on cognitive performance and neuroinflammation in a rat model of T2DM, with a particular focus on the roles of BDNF and acetylcholinesterase (AChE).

Materials and methods: The experimental design included four groups: control, HgCl2-treated, diabetic, and diabetic rats treated with HgCl2. T2DM was induced by intraperitoneal injections of streptozotocin (STZ) and nicotinamide (NA). Rats in the HgCl2-exposed groups received an oral dose of 0.375 mg/kg/day for 45 consecutive days. Cognitive performance was assessed using behavioral tests targeting spatial learning, recognition memory, and working memory. Additionally, hippocampal and prefrontal cortex (PFC) levels of TNF-α, IL-6, BDNF, and AChE activity were measured to evaluate neuroinflammatory and neurotoxic responses.

Results: The findings revealed a significant increase in fasting blood glucose levels in both diabetic and HgCl2-treated diabetic groups compared to controls (P < 0.001). Moreover, HgCl2 administration in diabetic rats led to a more pronounced impairment in cognitive functions compared to untreated diabetic rats (P < 0.05). These deficits were associated with enhanced neuroinflammatory markers (TNF-α and IL-6), decreased AChE activity, and reduced BDNF expression in the PFC and hippocampus (P < 0.05).

Conclusion: Overall, these results highlight the synergistic impact of hyperglycemia and HgCl2 exposure in exacerbating neuroinflammation and cognitive decline, suggesting a critical interaction between metabolic and environmental neurotoxic factors.

2型糖尿病(T2DM)是全球主要的健康问题,通常与慢性低度炎症和一系列认知障碍有关,包括学习和记忆障碍。氯化汞(HgCl2)是一种广泛存在的环境污染物,因其神经毒性和引发炎症反应的能力而被公认,特别是在代谢性疾病(如T2DM)患者中。目的:本研究旨在评估HgCl2对T2DM大鼠模型认知表现和神经炎症的亚慢性影响,特别关注BDNF和乙酰胆碱酯酶(AChE)的作用。材料与方法:实验设计分为四组:对照组、HgCl2处理组、糖尿病组和HgCl2处理组。采用链脲佐菌素(STZ)和烟酰胺(NA)腹腔注射诱导T2DM。暴露组大鼠口服剂量为0.375 mg/kg/d,连续45天。认知表现通过针对空间学习、识别记忆和工作记忆的行为测试来评估。此外,测量海马和前额叶皮质(PFC)中TNF-α、IL-6、BDNF和AChE活性的水平,以评估神经炎症和神经毒性反应。结果:研究结果显示,与对照组相比,糖尿病组和hgcl2治疗组的空腹血糖水平均显著升高(P < 0.001)。此外,与未给药的糖尿病大鼠相比,给药后糖尿病大鼠的认知功能受损更为明显(P < 0.05)。这些缺陷与神经炎症标志物(TNF-α和IL-6)升高、AChE活性降低以及PFC和海马中BDNF表达降低相关(P < 0.05)。结论:总的来说,这些结果强调了高血糖和HgCl2暴露在加剧神经炎症和认知能力下降方面的协同作用,表明代谢和环境神经毒性因素之间存在关键的相互作用。
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引用次数: 0
25 years of research and regulation: Is nanotechnology safe to commercialize? 25年的研究和监管:纳米技术商业化安全吗?
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-10 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1629813
Kirsten Rasmussen, Phil Sayre, Andrej Kobe, Mar Gonzalez, Hubert Rauscher

This paper examines the global communities' regulatory and scientific advancements in nanotechnology and nanomaterials since 2000. It explores some similarities and differences in nanomaterial safety compared to general chemical safety. The paper provides an overview of the encountered challenges and how far they have been resolved, as well as information on how different countries' legislators have addressed nanomaterials, including safety assessment in (new) legislation. Challenges arose due to the unique physico-chemical properties of some nanomaterials and included the lack of i) a regulatory definition, ii) applicable regulatory test methods, including methods for physico-chemical characterization and for ecotoxicological effects, as well as sample preparation and dosimetry, iii) assessment and modelling of human, especially occupational, and environmental exposure to nanomaterials, iv) quantification of nanomaterial in complex media, v) systems for collecting the data generated and ensuring FAIR (Findable, Accessible, Interoperable and Re-usable) and quality data, vi) reference nanomaterials, and vii) a frame for nanotechnology governance. The paper highlights the role of the Organisation for Economic Co-operation and Development (OECD) in building a global, regulatory understanding of nanotechnology and nanomaterials, as well as the OECD's achievements of developing nano-specific test guidelines. The paper identifies areas, such as alternative test methods, availability of reference nanomaterials, comparable data and FAIR data, analytical tools for quantifying nanomaterials in (complex) matrices that are still under-addressed. It gives a wider perspective of Governance of Advanced Materials including nanomaterials, also illustrated by carbon nanotubes used in batteries for electric vehicles, to also aid their commercialization. In the EU, the policy context is moving towards a holistic governance approach embracing sustainability dimensions.

本文考察了自2000年以来全球社区在纳米技术和纳米材料方面的监管和科学进展。它探讨了纳米材料安全与一般化学品安全的一些异同。这篇论文概述了所遇到的挑战以及它们已经得到了多大程度的解决,还提供了关于不同国家的立法者如何处理纳米材料的信息,包括(新)立法中的安全评估。由于某些纳米材料独特的物理化学特性,挑战出现了,包括缺乏i)监管定义,ii)适用的监管测试方法,包括物理化学表征和生态毒理学效应的方法,以及样品制备和剂量学,iii)人类,特别是职业和环境暴露于纳米材料的评估和建模,iv)复杂介质中纳米材料的量化,v)收集生成的数据并确保公平(可查找、可访问、可互操作和可重用)和高质量数据的系统,vi)参考纳米材料,以及vii)纳米技术治理框架。这篇论文强调了经济合作与发展组织(OECD)在建立对纳米技术和纳米材料的全球性、规范性理解方面的作用,以及OECD在制定纳米特异性测试指南方面的成就。这篇论文指出了一些领域,例如替代测试方法、参考纳米材料的可用性、可比较的数据和FAIR数据、用于在(复杂)矩阵中量化纳米材料的分析工具,这些领域仍然没有得到充分的解决。它为包括纳米材料在内的先进材料的治理提供了更广阔的视角,也以用于电动汽车电池的碳纳米管为例,以帮助其商业化。在欧盟,政策背景正在朝着包含可持续性维度的整体治理方法发展。
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引用次数: 0
Arsenic toxicity in the Drosophila brain at single cell resolution. 单细胞分辨率下果蝇脑中的砷毒性。
IF 4.6 Q2 TOXICOLOGY Pub Date : 2025-07-10 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1636431
Anurag Chaturvedi, Vijay Shankar, Bibhu Simkhada, Rachel A Lyman, Patrick Freymuth, Elisabeth Howansky, Katelynne M Collins, Trudy F C Mackay, Robert R H Anholt

Arsenic is an ubiquitous environmental toxicant with harmful physiological effects, including neurotoxicity. Modulation of arsenic-induced gene expression in the brain cannot be readily studied in human subjects. However, Drosophila allows quantification of transcriptional responses to neurotoxins at single cell resolution across the entire brain in a single analysis. We exposed Drosophila melanogaster to a chronic dose of NaAsO2 that does not cause rapid lethality and measured survival and negative geotaxis as a proxy of sensorimotor integration. Females survive longer than males but show earlier physiological impairment in climbing ability. Single-nuclei RNA sequencing showed widespread sex-antagonistic transcriptional responses with modulation of gene expression in females biased toward neuronal cell populations and in males toward glial cells. However, differentially expressed genes implicate similar biological pathways. Evolutionary conservation of fundamental processes of the nervous system enabled us to translate arsenic-induced changes in transcript abundances from the Drosophila model to orthologous human neurogenetic networks.

砷是一种普遍存在的环境毒物,具有有害的生理效应,包括神经毒性。砷诱导的基因表达在大脑中的调节在人类受试者中还不能轻易研究。然而,果蝇允许在单次分析中对整个大脑的单细胞分辨率的神经毒素转录反应进行量化。我们将黑腹果蝇暴露于慢性剂量的NaAsO2中,该剂量不会导致快速死亡,并测量了生存率和负地向性,作为感觉运动整合的代理。雌性比雄性存活时间长,但在攀爬能力上表现出较早的生理损伤。单核RNA测序显示广泛的性别拮抗转录反应,基因表达调节在雌性偏向神经元细胞群和雄性偏向神经胶质细胞。然而,差异表达的基因暗示着相似的生物学途径。神经系统基本过程的进化守恒使我们能够将砷诱导的转录物丰度变化从果蝇模型转化为同源的人类神经遗传网络。
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引用次数: 0
Unlocking liver physiology: comprehensive pathway maps for mechanistic understanding. 解锁肝脏生理学:了解机制的综合通路图。
IF 3.6 Q2 TOXICOLOGY Pub Date : 2025-07-07 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1619651
Luiz Ladeira, Anouk Verhoeven, Jonas van Ertvelde, Jian Jiang, Alessio Gamba, Julen Sanz-Serrano, Tamara Vanhaecke, Harm J Heusinkveld, Ramiro Jover, Mathieu Vinken, Liesbet Geris, Bernard Staumont

Aims: In silico methods provide a resourceful toolbox for new approach methodologies (NAMs). They can revolutionize chemical safety assessment by offering more efficient and human-relevant alternatives to traditional animal testing. In this study, we introduce two Liver Physiological Maps (PMs); comprehensive and machine-readable graphical representations of the intricate mechanisms governing two major liver functions.

Methods: Two PMs were developed through manual literature curation, integrating data from established pathway resources and domain expert knowledge. Cell-type specificity was validated using Human Protein Atlas datasets. An interactive version is available online for exploration. Cross-comparison analysis with existing Adverse Outcome Pathway (AOP) networks was performed to benchmark physiological coverage and identify knowledge gaps.

Results: The LiverLipidPM focuses on liver lipid metabolism, detailing pathways involved in fatty acid synthesis, triglycerides, cholesterol metabolism, and lipid catabolism in hepatocytes. And the LiverBilePM represents bile acid biosynthesis and secretion processes, detailing biosynthesis, transport, and secretion processes between hepatocytes and cholangiocytes. Both maps integrate metabolism with signaling pathways and regulatory networks. The interactive maps enable visualization of molecular pathways, linkage to external ontologies, and overlay of experimental data. Comparative analysis revealed unique mechanisms to each map and overlaps with existing AOP networks. Chemical-target queries identified new potential targets in both PMs, which might represent new molecular initiating events for AOP network extension.

Conclusion: The developed liver PMs serve as valuable resources for hepatology research, with a special focus on hepatotoxicity, supporting the refinement of AOP networks and the development of human-oriented in vitro test batteries for chemical toxicity assessment. These maps provide a foundation for creating computational models and mode-of-action ontologies while potentially extending their utility to systems biology and drug discovery applications.

目的:计算机方法为新方法方法论(NAMs)提供了一个资源丰富的工具箱。它们可以通过提供比传统动物试验更有效和更人性化的替代方案,彻底改变化学品安全评估。在本研究中,我们介绍了两种肝脏生理图谱(PMs);全面和机器可读的图形表示复杂的机制管理两个主要的肝功能。方法:通过手工文献整理,整合已建立的路径资源和领域专家知识的数据,开发两个pm。使用人类蛋白图谱数据集验证细胞类型特异性。互动式的版本可以在网上找到,以供探索。与现有的不良结果通路(AOP)网络进行交叉比较分析,以基准生理覆盖并确定知识差距。结果:LiverLipidPM专注于肝脏脂质代谢,详细描述了肝细胞中脂肪酸合成、甘油三酯、胆固醇代谢和脂质分解代谢的途径。LiverBilePM代表胆汁酸的生物合成和分泌过程,详细描述了肝细胞和胆管细胞之间的生物合成、运输和分泌过程。这两种图谱都将代谢与信号通路和调控网络结合起来。交互式地图使分子途径可视化,连接到外部本体,并覆盖实验数据。比较分析揭示了每个映射的独特机制以及与现有AOP网络的重叠。化学靶标查询在这两个pm中发现了新的潜在靶标,这可能代表了AOP网络扩展的新的分子起始事件。结论:已开发的肝脏PMs可作为肝病学研究的宝贵资源,特别是肝毒性研究,支持AOP网络的完善和面向人类的体外化学毒性评估测试电池的开发。这些图谱为创建计算模型和作用模式本体提供了基础,同时潜在地扩展了它们在系统生物学和药物发现应用中的效用。
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引用次数: 0
Correction: Associations of environmental pollution with pro-oxidant, antioxidant and inflammatory markers in pregnant mothers and newborns. 更正:环境污染与孕妇和新生儿中促氧化、抗氧化和炎症标志物的关系。
IF 3.6 Q2 TOXICOLOGY Pub Date : 2025-07-04 eCollection Date: 2025-01-01 DOI: 10.3389/ftox.2025.1650125
Antonin Ambroz, Jiri Klema, Andrea Rossnerova, Alena Milcova, Anna Pastorkova, Jana Pulkrabova, Ondrej Parizek, Veronika Gomersall, Tomas Gramblicka, Jaroslav Zelenka, Tomas Ruml, Nikola Vrzackova, Milos Veleminsky, Newroz Hasan, Jan Topinka, Radim J Sram, Pavel Rossner

[This corrects the article DOI: 10.3389/ftox.2025.1572486.].

[这更正了文章DOI: 10.3389/ftox.2025.1572486.]。
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引用次数: 0
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Frontiers in toxicology
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